Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08015

Experiment: M9+glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose
1,762,566	+		HER17_RS08010	0.26	+0.2
1,762,632	+		HER17_RS08010	0.31	+0.4
1,762,632	+		HER17_RS08010	0.31	+2.3
1,762,633	-		HER17_RS08010	0.31	+1.1
1,762,633	-		HER17_RS08010	0.31	+0.2
1,762,633	-		HER17_RS08010	0.31	-0.2
1,762,743	+		HER17_RS08010	0.39	+0.2
1,762,764	+		HER17_RS08010	0.41	-0.4
1,762,772	+		HER17_RS08010	0.42	+0.7
1,762,806	+		HER17_RS08010	0.44	+0.9
1,762,806	+		HER17_RS08010	0.44	-2.7
1,762,806	+		HER17_RS08010	0.44	-0.5
1,762,806	+		HER17_RS08010	0.44	+2.6
1,762,806	+		HER17_RS08010	0.44	+0.9
1,762,807	-		HER17_RS08010	0.44	+0.5
1,762,807	-		HER17_RS08010	0.44	+1.3
1,762,807	-		HER17_RS08010	0.44	+0.5
1,762,807	-		HER17_RS08010	0.44	+0.2
1,762,807	-		HER17_RS08010	0.44	-2.1
1,762,807	-		HER17_RS08010	0.44	-0.4
1,762,810	-		HER17_RS08010	0.45	+1.5
1,762,844	+		HER17_RS08010	0.47	-0.6
1,762,844	+		HER17_RS08010	0.47	+0.1
1,762,844	+		HER17_RS08010	0.47	+0.2
1,762,853	+		HER17_RS08010	0.48	+0.5
1,762,867	-		HER17_RS08010	0.49	-0.5
1,762,912	-		HER17_RS08010	0.53	+1.1
1,762,926	+		HER17_RS08010	0.54	+0.7
1,762,927	-		HER17_RS08010	0.54	+0.6
1,762,927	-		HER17_RS08010	0.54	-2.2
1,762,929	-		HER17_RS08010	0.54	+1.3
1,762,929	-		HER17_RS08010	0.54	-1.8
1,762,929	-		HER17_RS08010	0.54	+0.9
1,762,929	-		HER17_RS08010	0.54	+0.3
1,762,957	-		HER17_RS08010	0.56	+0.2
1,762,965	+		HER17_RS08010	0.57	+0.4
1,762,965	+		HER17_RS08010	0.57	+1.9
1,762,965	+		HER17_RS08010	0.57	+0.4
1,762,965	+		HER17_RS08010	0.57	+0.9
1,762,966	-		HER17_RS08010	0.57	+2.7
1,762,966	-		HER17_RS08010	0.57	-0.3
1,762,966	-		HER17_RS08010	0.57	-3.5
1,762,966	-		HER17_RS08010	0.57	+0.9
1,762,966	-		HER17_RS08010	0.57	+0.5
1,762,966	-		HER17_RS08010	0.57	+0.7
1,762,970	+		HER17_RS08010	0.57	+0.2
1,762,995	+		HER17_RS08010	0.59	+0.3
1,762,996	-		HER17_RS08010	0.59	+1.1
1,763,038	-		HER17_RS08010	0.62	-0.3
1,763,109	+		HER17_RS08010	0.68	+0.8
1,763,150	+		HER17_RS08010	0.71	+1.6
1,763,212	-		HER17_RS08010	0.76	+0.5
1,763,239	-		HER17_RS08010	0.78	+1.8
1,763,254	-		HER17_RS08010	0.79	-0.2
1,763,304	+		HER17_RS08010	0.83	-2.3
1,763,304	+		HER17_RS08010	0.83	+0.7
1,763,305	-		HER17_RS08010	0.83	-1.3
1,763,305	-		HER17_RS08010	0.83	-1.0
1,763,318	-		HER17_RS08010	0.84	-1.6
1,763,362	-		HER17_RS08010	0.87	-1.6
1,763,362	-		HER17_RS08010	0.87	+1.7
1,763,362	-		HER17_RS08010	0.87	+0.6
1,763,362	-		HER17_RS08010	0.87	+1.3
1,763,362	-		HER17_RS08010	0.87	+0.2
1,763,373	+		HER17_RS08010	0.88	+0.6
1,763,374	-		HER17_RS08010	0.88	+0.8
1,763,420	+				-1.0
1,763,421	-				-0.1
1,763,430	+				-1.3
1,763,431	-				+1.7
1,763,466	-				-1.8
1,763,484	+				-0.3
1,763,485	-				-1.5
1,763,485	-				+1.1
1,763,510	+				-3.3
1,763,511	-				+0.3
1,763,584	-				+0.6
1,763,585	+				+0.1
1,763,585	+				-1.1
1,763,586	-				+1.5
1,763,586	-				-1.6
1,763,645	+				+0.6
1,763,645	+				-1.1
1,763,646	-				-1.6
1,763,669	+				+0.3
1,763,669	+				+0.2
1,763,670	-				+0.9
1,763,711	+		HER17_RS08015	0.11	+2.0
1,763,711	+		HER17_RS08015	0.11	-0.8
1,763,712	-		HER17_RS08015	0.11	-0.7
1,763,777	+		HER17_RS08015	0.15	+0.0
1,763,782	+		HER17_RS08015	0.15	-2.7
1,763,785	-		HER17_RS08015	0.16	+0.5
1,763,816	+		HER17_RS08015	0.18	-2.7
1,763,816	+		HER17_RS08015	0.18	+2.0
1,763,890	+		HER17_RS08015	0.22	+2.9
1,763,890	+		HER17_RS08015	0.22	+0.3
1,763,979	+		HER17_RS08015	0.28	+0.6
1,763,979	+		HER17_RS08015	0.28	+1.1
1,763,979	+		HER17_RS08015	0.28	+0.6
1,763,980	-		HER17_RS08015	0.28	+1.0
1,763,980	-		HER17_RS08015	0.28	-0.5
1,764,036	+		HER17_RS08015	0.32	-1.6
1,764,087	-		HER17_RS08015	0.35	+0.5
1,764,152	+		HER17_RS08015	0.39	+2.7
1,764,345	-		HER17_RS08015	0.51	+1.5
1,764,363	+		HER17_RS08015	0.52	+0.2
1,764,420	-		HER17_RS08015	0.56	-3.1
1,764,446	+		HER17_RS08015	0.58	+0.2
1,764,533	+		HER17_RS08015	0.63	+1.9
1,764,600	-		HER17_RS08015	0.68	-0.3
1,764,657	+		HER17_RS08015	0.71	+0.2
1,764,657	+		HER17_RS08015	0.71	-1.0
1,764,658	-		HER17_RS08015	0.71	+0.4
1,764,658	-		HER17_RS08015	0.71	+1.4
1,764,710	+		HER17_RS08015	0.75	+0.7
1,764,710	+		HER17_RS08015	0.75	+1.3
1,764,711	-		HER17_RS08015	0.75	+0.7
1,764,711	-		HER17_RS08015	0.75	+0.5
1,764,746	-		HER17_RS08015	0.77	+0.5
1,764,799	+		HER17_RS08015	0.80	-0.1
1,764,799	+		HER17_RS08015	0.80	+1.8
1,764,800	-		HER17_RS08015	0.80	-0.8
1,764,811	+		HER17_RS08015	0.81	+0.9
1,764,811	+		HER17_RS08015	0.81	+1.3
1,764,823	-		HER17_RS08015	0.82	-0.3
1,764,881	+		HER17_RS08015	0.85	-0.6
1,764,953	-				-0.8
1,765,007	-				+1.2
1,765,041	+				+0.9
1,765,042	-				-1.8
1,765,045	-				-1.2
1,765,102	+				+0.3
1,765,113	+				-1.5
1,765,129	-				+2.2
1,765,174	-				-0.2
1,765,181	+				+1.2
1,765,181	+				+0.9
1,765,201	-				-0.7
1,765,225	+				-0.3
1,765,226	-				-1.5
1,765,358	+		HER17_RS08020	0.11	-2.1
1,765,368	-		HER17_RS08020	0.12	-2.4
1,765,437	+		HER17_RS08020	0.15	+0.6
1,765,453	+		HER17_RS08020	0.16	+0.2
1,765,454	-		HER17_RS08020	0.16	-0.8
1,765,454	-		HER17_RS08020	0.16	+2.1
1,765,457	+		HER17_RS08020	0.16	+1.2
1,765,458	-		HER17_RS08020	0.16	+0.8
1,765,458	-		HER17_RS08020	0.16	+1.3
1,765,478	+		HER17_RS08020	0.17	+0.5
1,765,478	+		HER17_RS08020	0.17	+0.2
1,765,479	-		HER17_RS08020	0.17	-2.4
1,765,557	-		HER17_RS08020	0.21	+0.3
1,765,615	+		HER17_RS08020	0.23	+0.1
1,765,642	+		HER17_RS08020	0.25	+2.8
1,765,716	-		HER17_RS08020	0.28	-1.0
1,765,767	+		HER17_RS08020	0.30	+0.5
1,765,767	+		HER17_RS08020	0.30	-0.4
1,765,767	+		HER17_RS08020	0.30	+1.9
1,765,768	-		HER17_RS08020	0.30	+1.3
1,765,772	-		HER17_RS08020	0.31	+0.3
1,765,772	-		HER17_RS08020	0.31	+0.0
1,765,809	-		HER17_RS08020	0.32	-0.2
1,765,874	-		HER17_RS08020	0.35	+1.2
1,765,897	+		HER17_RS08020	0.36	+1.1
1,765,903	+		HER17_RS08020	0.37	-1.6
1,765,904	-		HER17_RS08020	0.37	+1.2
1,765,904	-		HER17_RS08020	0.37	+0.3
1,765,904	-		HER17_RS08020	0.37	-1.4
1,765,985	+		HER17_RS08020	0.41	-2.1
1,765,985	+		HER17_RS08020	0.41	-0.2
1,765,985	+		HER17_RS08020	0.41	+1.6
1,765,985	+		HER17_RS08020	0.41	+1.8
1,765,986	-		HER17_RS08020	0.41	+1.1
1,765,993	+		HER17_RS08020	0.41	-0.2
1,765,994	-		HER17_RS08020	0.41	-1.1
1,765,997	-		HER17_RS08020	0.41	+0.2
1,766,017	+		HER17_RS08020	0.42	-1.3
1,766,083	+		HER17_RS08020	0.45	+1.1
1,766,104	+		HER17_RS08020	0.46	+1.4