Experiment: M9+glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS01905 and HER17_RS01910 are separated by 119 nucleotides HER17_RS01910 and HER17_RS01915 are separated by 158 nucleotides
HER17_RS01905: HER17_RS01905 - aminodeoxychorismate synthase component II, at 448,010 to 448,585
_RS01905
HER17_RS01910: HER17_RS01910 - aspartate aminotransferase family protein, at 448,705 to 449,931
_RS01910
HER17_RS01915: HER17_RS01915 - cAMP-activated global transcriptional regulator CRP, at 450,090 to 450,722
_RS01915
Position (kb) 448
449
450 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 447.827 kb on + strand at 447.886 kb on - strand at 447.897 kb on - strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.976 kb on + strand at 447.976 kb on + strand at 447.976 kb on + strand at 447.976 kb on + strand at 447.977 kb on - strand at 447.977 kb on - strand at 447.977 kb on - strand at 447.977 kb on - strand at 448.009 kb on + strand at 448.009 kb on + strand at 448.009 kb on + strand at 448.010 kb on - strand at 448.010 kb on - strand at 448.010 kb on - strand at 448.017 kb on + strand at 448.017 kb on + strand at 448.018 kb on - strand at 448.018 kb on - strand at 448.027 kb on + strand at 448.031 kb on + strand at 448.031 kb on + strand at 448.031 kb on + strand at 448.032 kb on - strand at 448.042 kb on + strand at 448.046 kb on + strand at 448.046 kb on + strand at 448.056 kb on - strand at 448.171 kb on + strand, within HER17_RS01905 at 448.171 kb on + strand, within HER17_RS01905 at 448.222 kb on + strand, within HER17_RS01905 at 448.231 kb on + strand, within HER17_RS01905 at 448.232 kb on - strand, within HER17_RS01905 at 448.591 kb on + strand at 448.591 kb on + strand at 448.600 kb on - strand at 448.650 kb on + strand at 448.784 kb on + strand at 448.834 kb on + strand, within HER17_RS01910 at 448.834 kb on + strand, within HER17_RS01910 at 448.835 kb on - strand, within HER17_RS01910 at 448.855 kb on - strand, within HER17_RS01910 at 448.855 kb on - strand, within HER17_RS01910 at 448.941 kb on + strand, within HER17_RS01910 at 448.942 kb on - strand, within HER17_RS01910 at 449.053 kb on - strand, within HER17_RS01910 at 449.085 kb on + strand, within HER17_RS01910 at 449.086 kb on - strand, within HER17_RS01910 at 449.116 kb on + strand, within HER17_RS01910 at 449.116 kb on + strand, within HER17_RS01910 at 449.116 kb on + strand, within HER17_RS01910 at 449.169 kb on + strand, within HER17_RS01910 at 449.173 kb on + strand, within HER17_RS01910 at 449.173 kb on + strand, within HER17_RS01910 at 449.173 kb on + strand, within HER17_RS01910 at 449.174 kb on - strand, within HER17_RS01910 at 449.174 kb on - strand, within HER17_RS01910 at 449.174 kb on - strand, within HER17_RS01910 at 449.174 kb on - strand, within HER17_RS01910 at 449.174 kb on - strand, within HER17_RS01910 at 449.194 kb on - strand, within HER17_RS01910 at 449.262 kb on + strand, within HER17_RS01910 at 449.262 kb on + strand, within HER17_RS01910 at 449.262 kb on + strand, within HER17_RS01910 at 449.262 kb on + strand, within HER17_RS01910 at 449.262 kb on + strand, within HER17_RS01910 at 449.262 kb on + strand, within HER17_RS01910 at 449.263 kb on - strand, within HER17_RS01910 at 449.263 kb on - strand, within HER17_RS01910 at 449.263 kb on - strand, within HER17_RS01910 at 449.263 kb on - strand, within HER17_RS01910 at 449.375 kb on + strand, within HER17_RS01910 at 449.376 kb on - strand, within HER17_RS01910 at 449.376 kb on - strand, within HER17_RS01910 at 449.376 kb on - strand, within HER17_RS01910 at 449.417 kb on + strand, within HER17_RS01910 at 449.417 kb on + strand, within HER17_RS01910 at 449.440 kb on - strand, within HER17_RS01910 at 449.442 kb on + strand, within HER17_RS01910 at 449.442 kb on + strand, within HER17_RS01910 at 449.442 kb on + strand, within HER17_RS01910 at 449.544 kb on - strand, within HER17_RS01910 at 449.557 kb on + strand, within HER17_RS01910 at 449.557 kb on + strand, within HER17_RS01910 at 449.557 kb on + strand, within HER17_RS01910 at 449.557 kb on + strand, within HER17_RS01910 at 449.558 kb on - strand, within HER17_RS01910 at 449.558 kb on - strand, within HER17_RS01910 at 449.607 kb on + strand, within HER17_RS01910 at 449.607 kb on + strand, within HER17_RS01910 at 449.607 kb on + strand, within HER17_RS01910 at 449.607 kb on + strand, within HER17_RS01910 at 449.608 kb on - strand, within HER17_RS01910 at 449.608 kb on - strand, within HER17_RS01910 at 449.608 kb on - strand, within HER17_RS01910 at 449.608 kb on - strand, within HER17_RS01910 at 449.610 kb on + strand, within HER17_RS01910 at 449.624 kb on + strand, within HER17_RS01910 at 449.624 kb on + strand, within HER17_RS01910 at 449.625 kb on - strand, within HER17_RS01910 at 449.625 kb on - strand, within HER17_RS01910 at 449.625 kb on - strand, within HER17_RS01910 at 449.697 kb on - strand, within HER17_RS01910 at 449.803 kb on - strand, within HER17_RS01910 at 449.803 kb on - strand, within HER17_RS01910 at 449.841 kb on - strand at 449.868 kb on + strand at 449.933 kb on + strand at 449.934 kb on - strand at 449.934 kb on - strand at 449.934 kb on - strand at 449.965 kb on + strand at 449.966 kb on - strand at 450.065 kb on - strand at 450.071 kb on - strand at 450.075 kb on + strand at 450.760 kb on - strand at 450.792 kb on - strand at 450.840 kb on - strand at 450.842 kb on - strand at 450.842 kb on - strand at 450.856 kb on - strand at 450.856 kb on - strand at 450.905 kb on + strand at 450.905 kb on + strand at 450.905 kb on + strand at 450.906 kb on - strand at 450.906 kb on - strand at 450.908 kb on - strand at 450.920 kb on - strand at 450.920 kb on - strand at 450.920 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glucose remove 447,827 + +0.2 447,886 - -0.1 447,897 - -0.8 447,971 + +0.9 447,971 + -0.7 447,971 + +0.1 447,971 + -0.4 447,971 + +0.2 447,971 + -0.6 447,971 + +0.2 447,971 + -0.2 447,972 - +1.7 447,972 - +1.1 447,972 - +0.3 447,972 - +0.6 447,972 - +0.0 447,972 - +1.3 447,972 - +1.2 447,972 - +1.0 447,976 + +0.6 447,976 + +1.7 447,976 + +0.1 447,976 + +1.8 447,977 - -0.2 447,977 - +1.1 447,977 - -1.5 447,977 - -1.0 448,009 + +0.9 448,009 + +0.6 448,009 + -2.6 448,010 - -1.0 448,010 - -0.3 448,010 - +0.9 448,017 + -0.1 448,017 + -0.2 448,018 - +0.1 448,018 - +0.7 448,027 + +0.1 448,031 + -1.8 448,031 + -0.5 448,031 + -1.7 448,032 - -2.4 448,042 + -2.2 448,046 + -1.3 448,046 + -1.5 448,056 - -0.7 448,171 + HER17_RS01905 0.28 -0.3 448,171 + HER17_RS01905 0.28 -0.8 448,222 + HER17_RS01905 0.37 -0.4 448,231 + HER17_RS01905 0.38 -2.0 448,232 - HER17_RS01905 0.39 -1.1 448,591 + -1.3 448,591 + +0.7 448,600 - +1.1 448,650 + -1.4 448,784 + -4.6 448,834 + HER17_RS01910 0.11 -0.6 448,834 + HER17_RS01910 0.11 -1.7 448,835 - HER17_RS01910 0.11 -3.2 448,855 - HER17_RS01910 0.12 -4.4 448,855 - HER17_RS01910 0.12 -3.2 448,941 + HER17_RS01910 0.19 -4.2 448,942 - HER17_RS01910 0.19 -4.6 449,053 - HER17_RS01910 0.28 -0.9 449,085 + HER17_RS01910 0.31 -2.9 449,086 - HER17_RS01910 0.31 -3.4 449,116 + HER17_RS01910 0.33 -2.6 449,116 + HER17_RS01910 0.33 -2.6 449,116 + HER17_RS01910 0.33 -2.2 449,169 + HER17_RS01910 0.38 -4.0 449,173 + HER17_RS01910 0.38 -2.1 449,173 + HER17_RS01910 0.38 -4.3 449,173 + HER17_RS01910 0.38 -4.4 449,174 - HER17_RS01910 0.38 -2.6 449,174 - HER17_RS01910 0.38 -3.9 449,174 - HER17_RS01910 0.38 -2.6 449,174 - HER17_RS01910 0.38 -3.2 449,174 - HER17_RS01910 0.38 -4.1 449,194 - HER17_RS01910 0.40 -0.6 449,262 + HER17_RS01910 0.45 -1.1 449,262 + HER17_RS01910 0.45 -0.3 449,262 + HER17_RS01910 0.45 -2.2 449,262 + HER17_RS01910 0.45 -3.4 449,262 + HER17_RS01910 0.45 -5.7 449,262 + HER17_RS01910 0.45 -3.4 449,263 - HER17_RS01910 0.45 -3.9 449,263 - HER17_RS01910 0.45 -3.5 449,263 - HER17_RS01910 0.45 -3.9 449,263 - HER17_RS01910 0.45 -2.1 449,375 + HER17_RS01910 0.55 -2.4 449,376 - HER17_RS01910 0.55 -4.4 449,376 - HER17_RS01910 0.55 -3.3 449,376 - HER17_RS01910 0.55 -3.8 449,417 + HER17_RS01910 0.58 +0.5 449,417 + HER17_RS01910 0.58 -3.2 449,440 - HER17_RS01910 0.60 -3.4 449,442 + HER17_RS01910 0.60 -1.6 449,442 + HER17_RS01910 0.60 -2.1 449,442 + HER17_RS01910 0.60 -2.2 449,544 - HER17_RS01910 0.68 -3.6 449,557 + HER17_RS01910 0.69 -3.1 449,557 + HER17_RS01910 0.69 -3.7 449,557 + HER17_RS01910 0.69 -3.9 449,557 + HER17_RS01910 0.69 -0.6 449,558 - HER17_RS01910 0.70 -1.6 449,558 - HER17_RS01910 0.70 -4.4 449,607 + HER17_RS01910 0.74 -2.9 449,607 + HER17_RS01910 0.74 -2.5 449,607 + HER17_RS01910 0.74 -3.5 449,607 + HER17_RS01910 0.74 -2.0 449,608 - HER17_RS01910 0.74 -2.7 449,608 - HER17_RS01910 0.74 -4.2 449,608 - HER17_RS01910 0.74 -1.7 449,608 - HER17_RS01910 0.74 -2.1 449,610 + HER17_RS01910 0.74 -2.9 449,624 + HER17_RS01910 0.75 -3.8 449,624 + HER17_RS01910 0.75 -2.5 449,625 - HER17_RS01910 0.75 -4.9 449,625 - HER17_RS01910 0.75 -1.1 449,625 - HER17_RS01910 0.75 -3.3 449,697 - HER17_RS01910 0.81 -3.7 449,803 - HER17_RS01910 0.89 -3.3 449,803 - HER17_RS01910 0.89 -3.2 449,841 - -2.6 449,868 + -2.5 449,933 + -1.3 449,934 - -0.8 449,934 - +0.5 449,934 - +1.4 449,965 + -2.1 449,966 - +0.3 450,065 - +0.9 450,071 - +2.1 450,075 + +0.1 450,760 - +1.0 450,792 - +1.7 450,840 - -0.6 450,842 - +0.1 450,842 - -2.6 450,856 - +2.4 450,856 - -1.5 450,905 + -0.3 450,905 + +3.7 450,905 + +4.5 450,906 - -1.5 450,906 - -1.0 450,908 - -0.1 450,920 - +1.6 450,920 - +0.4 450,920 - -1.7
Or see this region's nucleotide sequence