Experiment: M9+glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS18575 and HER17_RS18580 overlap by 4 nucleotides HER17_RS18580 and HER17_RS18585 overlap by 1 nucleotides HER17_RS18585 and HER17_RS18590 overlap by 1 nucleotides HER17_RS18590 and HER17_RS18595 are separated by 68 nucleotides HER17_RS18595 and HER17_RS18600 overlap by 4 nucleotides HER17_RS18600 and HER17_RS18605 are separated by 81 nucleotides HER17_RS18605 and HER17_RS18610 are separated by 9 nucleotides
HER17_RS18575: HER17_RS18575 - hypothetical protein, at 4,178,451 to 4,178,645
_RS18575
HER17_RS18580: HER17_RS18580 - TraR/DksA family transcriptional regulator, at 4,178,642 to 4,178,866
_RS18580
HER17_RS18585: HER17_RS18585 - DUF5405 family protein, at 4,178,866 to 4,179,174
_RS18585
HER17_RS18590: HER17_RS18590 - DUF2732 family protein, at 4,179,174 to 4,179,416
_RS18590
HER17_RS18595: HER17_RS18595 - replication protein B, at 4,179,485 to 4,179,985
_RS18595
HER17_RS18600: HER17_RS18600 - hypothetical protein, at 4,179,982 to 4,180,158
_RS18600
HER17_RS18605: HER17_RS18605 - hypothetical protein, at 4,180,240 to 4,180,839
_RS18605
HER17_RS18610: HER17_RS18610 - phage regulatory CII family protein, at 4,180,849 to 4,181,358
_RS18610
Position (kb) 4179
4180 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4178.665 kb on + strand, within HER17_RS18580 at 4178.665 kb on + strand, within HER17_RS18580 at 4178.683 kb on + strand, within HER17_RS18580 at 4178.749 kb on + strand, within HER17_RS18580 at 4178.768 kb on - strand, within HER17_RS18580 at 4178.777 kb on + strand, within HER17_RS18580 at 4178.777 kb on + strand, within HER17_RS18580 at 4178.819 kb on + strand, within HER17_RS18580 at 4178.819 kb on + strand, within HER17_RS18580 at 4178.855 kb on - strand at 4178.867 kb on + strand at 4179.052 kb on + strand, within HER17_RS18585 at 4179.056 kb on + strand, within HER17_RS18585 at 4179.056 kb on + strand, within HER17_RS18585 at 4179.144 kb on + strand at 4179.158 kb on + strand at 4179.412 kb on + strand at 4179.412 kb on + strand at 4179.422 kb on + strand at 4179.435 kb on + strand at 4179.560 kb on + strand, within HER17_RS18595 at 4179.626 kb on - strand, within HER17_RS18595 at 4179.655 kb on + strand, within HER17_RS18595 at 4179.880 kb on - strand, within HER17_RS18595 at 4179.880 kb on - strand, within HER17_RS18595 at 4179.880 kb on - strand, within HER17_RS18595 at 4179.882 kb on + strand, within HER17_RS18595 at 4179.882 kb on + strand, within HER17_RS18595 at 4179.962 kb on - strand at 4179.997 kb on + strand at 4179.997 kb on + strand at 4179.998 kb on - strand at 4179.999 kb on + strand at 4179.999 kb on + strand at 4180.004 kb on - strand, within HER17_RS18600 at 4180.004 kb on - strand, within HER17_RS18600 at 4180.174 kb on - strand at 4180.207 kb on + strand at 4180.208 kb on - strand at 4180.444 kb on - strand, within HER17_RS18605 at 4180.608 kb on + strand, within HER17_RS18605 at 4180.806 kb on + strand at 4180.812 kb on + strand at 4180.873 kb on - strand at 4180.876 kb on - strand at 4180.934 kb on - strand, within HER17_RS18610 at 4180.958 kb on + strand, within HER17_RS18610 at 4180.958 kb on + strand, within HER17_RS18610 at 4180.977 kb on + strand, within HER17_RS18610
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glucose remove 4,178,665 + HER17_RS18580 0.10 +0.8 4,178,665 + HER17_RS18580 0.10 -0.0 4,178,683 + HER17_RS18580 0.18 +0.5 4,178,749 + HER17_RS18580 0.48 -0.2 4,178,768 - HER17_RS18580 0.56 +1.0 4,178,777 + HER17_RS18580 0.60 -0.5 4,178,777 + HER17_RS18580 0.60 -0.1 4,178,819 + HER17_RS18580 0.79 -0.4 4,178,819 + HER17_RS18580 0.79 -1.0 4,178,855 - +0.8 4,178,867 + -0.9 4,179,052 + HER17_RS18585 0.60 -0.7 4,179,056 + HER17_RS18585 0.61 -0.8 4,179,056 + HER17_RS18585 0.61 -0.7 4,179,144 + -0.1 4,179,158 + +0.8 4,179,412 + -0.5 4,179,412 + -0.4 4,179,422 + -0.4 4,179,435 + -0.0 4,179,560 + HER17_RS18595 0.15 -0.0 4,179,626 - HER17_RS18595 0.28 +1.1 4,179,655 + HER17_RS18595 0.34 +0.0 4,179,880 - HER17_RS18595 0.79 +0.2 4,179,880 - HER17_RS18595 0.79 +1.2 4,179,880 - HER17_RS18595 0.79 +2.8 4,179,882 + HER17_RS18595 0.79 +0.8 4,179,882 + HER17_RS18595 0.79 +0.1 4,179,962 - +1.5 4,179,997 + +0.6 4,179,997 + +0.2 4,179,998 - -0.3 4,179,999 + -1.2 4,179,999 + -1.3 4,180,004 - HER17_RS18600 0.12 +0.0 4,180,004 - HER17_RS18600 0.12 +0.1 4,180,174 - -1.2 4,180,207 + -2.5 4,180,208 - -0.4 4,180,444 - HER17_RS18605 0.34 +1.6 4,180,608 + HER17_RS18605 0.61 -1.1 4,180,806 + +1.4 4,180,812 + +1.0 4,180,873 - +0.8 4,180,876 - -0.9 4,180,934 - HER17_RS18610 0.17 +1.2 4,180,958 + HER17_RS18610 0.21 +0.9 4,180,958 + HER17_RS18610 0.21 -0.4 4,180,977 + HER17_RS18610 0.25 -0.3
Or see this region's nucleotide sequence