Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15480

Experiment: M9+glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose
3,468,570	+		HER17_RS15475	0.13	-0.4
3,468,570	+		HER17_RS15475	0.13	+1.4
3,468,570	+		HER17_RS15475	0.13	+0.1
3,468,570	+		HER17_RS15475	0.13	-1.3
3,468,571	-		HER17_RS15475	0.13	-0.2
3,468,571	-		HER17_RS15475	0.13	-0.2
3,468,571	-		HER17_RS15475	0.13	+0.5
3,468,630	+		HER17_RS15475	0.18	-0.9
3,468,630	+		HER17_RS15475	0.18	-0.4
3,468,631	-		HER17_RS15475	0.18	-0.2
3,468,640	+		HER17_RS15475	0.19	-0.8
3,468,704	+		HER17_RS15475	0.25	+0.6
3,468,704	+		HER17_RS15475	0.25	-1.5
3,468,705	-		HER17_RS15475	0.25	-0.5
3,468,705	-		HER17_RS15475	0.25	-1.2
3,468,705	-		HER17_RS15475	0.25	-0.0
3,468,705	-		HER17_RS15475	0.25	-1.5
3,468,708	+		HER17_RS15475	0.25	+0.2
3,468,846	+		HER17_RS15475	0.38	+0.5
3,468,846	+		HER17_RS15475	0.38	-1.8
3,468,847	-		HER17_RS15475	0.38	-1.8
3,468,851	-		HER17_RS15475	0.38	-2.5
3,468,851	-		HER17_RS15475	0.38	+0.2
3,468,851	-		HER17_RS15475	0.38	+1.7
3,468,966	+		HER17_RS15475	0.48	-0.6
3,468,966	+		HER17_RS15475	0.48	+0.5
3,468,966	+		HER17_RS15475	0.48	-0.0
3,468,966	+		HER17_RS15475	0.48	-1.0
3,468,966	+		HER17_RS15475	0.48	+0.9
3,468,967	-		HER17_RS15475	0.49	-1.7
3,468,967	-		HER17_RS15475	0.49	+0.9
3,468,967	-		HER17_RS15475	0.49	-0.1
3,468,998	-		HER17_RS15475	0.51	-1.4
3,468,998	-		HER17_RS15475	0.51	-0.8
3,469,020	+		HER17_RS15475	0.53	-1.3
3,469,020	+		HER17_RS15475	0.53	-1.0
3,469,020	+		HER17_RS15475	0.53	+0.4
3,469,020	+		HER17_RS15475	0.53	-0.1
3,469,020	+		HER17_RS15475	0.53	+0.7
3,469,020	+		HER17_RS15475	0.53	+2.4
3,469,020	+		HER17_RS15475	0.53	-1.2
3,469,021	-		HER17_RS15475	0.53	+0.8
3,469,021	-		HER17_RS15475	0.53	+0.0
3,469,021	-		HER17_RS15475	0.53	+0.2
3,469,021	-		HER17_RS15475	0.53	-1.9
3,469,062	+		HER17_RS15475	0.57	-0.6
3,469,062	+		HER17_RS15475	0.57	+1.3
3,469,062	+		HER17_RS15475	0.57	+0.7
3,469,062	+		HER17_RS15475	0.57	-0.8
3,469,062	+		HER17_RS15475	0.57	-1.1
3,469,063	-		HER17_RS15475	0.57	-0.2
3,469,063	-		HER17_RS15475	0.57	-3.2
3,469,116	+		HER17_RS15475	0.62	+0.3
3,469,311	+		HER17_RS15475	0.80	-0.7
3,469,311	+		HER17_RS15475	0.80	-0.1
3,469,312	-		HER17_RS15475	0.80	-0.8
3,469,312	-		HER17_RS15475	0.80	-0.5
3,469,312	-		HER17_RS15475	0.80	-1.9
3,469,534	+				+0.2
3,469,545	+				+0.2
3,469,545	+				-0.3
3,469,598	-				-1.4
3,469,598	-				-1.3
3,469,621	+				-0.2
3,469,622	-				+0.2
3,469,711	+				-0.1
3,469,732	+				+0.3
3,469,829	+		HER17_RS15480	0.14	+2.8
3,469,829	+		HER17_RS15480	0.14	-2.9
3,469,829	+		HER17_RS15480	0.14	-1.2
3,469,830	-		HER17_RS15480	0.14	-0.1
3,469,830	-		HER17_RS15480	0.14	+1.6
3,469,830	-		HER17_RS15480	0.14	-0.2
3,469,830	-		HER17_RS15480	0.14	-0.2
3,469,855	+		HER17_RS15480	0.15	+0.1
3,469,855	+		HER17_RS15480	0.15	+0.4
3,469,855	+		HER17_RS15480	0.15	+0.4
3,469,855	+		HER17_RS15480	0.15	-0.1
3,469,855	+		HER17_RS15480	0.15	+0.3
3,469,856	-		HER17_RS15480	0.15	+2.0
3,469,858	+		HER17_RS15480	0.15	-0.0
3,469,858	+		HER17_RS15480	0.15	+0.5
3,469,859	-		HER17_RS15480	0.15	-0.6
3,469,946	-		HER17_RS15480	0.19	-0.6
3,469,990	-		HER17_RS15480	0.22	+1.4
3,470,016	-		HER17_RS15480	0.23	-1.4
3,470,016	-		HER17_RS15480	0.23	+0.6
3,470,045	-		HER17_RS15480	0.24	+0.2
3,470,045	-		HER17_RS15480	0.24	-1.7
3,470,048	-		HER17_RS15480	0.24	-2.3
3,470,048	-		HER17_RS15480	0.24	-0.2
3,470,048	-		HER17_RS15480	0.24	+0.9
3,470,130	+		HER17_RS15480	0.28	+1.1
3,470,130	+		HER17_RS15480	0.28	+0.2
3,470,130	+		HER17_RS15480	0.28	+0.5
3,470,130	+		HER17_RS15480	0.28	-0.2
3,470,131	-		HER17_RS15480	0.28	-2.2
3,470,131	-		HER17_RS15480	0.28	-1.2
3,470,131	-		HER17_RS15480	0.28	+0.3
3,470,296	+		HER17_RS15480	0.36	+1.1
3,470,297	-		HER17_RS15480	0.36	+0.3
3,470,297	-		HER17_RS15480	0.36	-0.1
3,470,297	-		HER17_RS15480	0.36	-0.5
3,470,303	+		HER17_RS15480	0.36	+0.2
3,470,304	-		HER17_RS15480	0.36	-2.9
3,470,363	-		HER17_RS15480	0.39	-0.8
3,470,363	-		HER17_RS15480	0.39	+0.4
3,470,394	-		HER17_RS15480	0.40	+0.3
3,470,394	-		HER17_RS15480	0.40	-0.4
3,470,394	-		HER17_RS15480	0.40	+3.0
3,470,394	-		HER17_RS15480	0.40	-0.7
3,470,477	+		HER17_RS15480	0.44	-1.8
3,470,477	+		HER17_RS15480	0.44	-1.4
3,470,477	+		HER17_RS15480	0.44	-0.8
3,470,477	+		HER17_RS15480	0.44	-0.8
3,470,477	+		HER17_RS15480	0.44	+0.4
3,470,477	+		HER17_RS15480	0.44	-2.6
3,470,477	+		HER17_RS15480	0.44	-1.2
3,470,477	+		HER17_RS15480	0.44	+1.6
3,470,483	+		HER17_RS15480	0.45	-2.0
3,470,483	+		HER17_RS15480	0.45	-0.3
3,470,483	+		HER17_RS15480	0.45	+0.5
3,470,484	-		HER17_RS15480	0.45	-0.9
3,470,484	-		HER17_RS15480	0.45	+1.4
3,470,484	-		HER17_RS15480	0.45	-0.1
3,470,528	+		HER17_RS15480	0.47	+0.0
3,470,529	-		HER17_RS15480	0.47	-2.2
3,470,529	-		HER17_RS15480	0.47	-1.5
3,470,529	-		HER17_RS15480	0.47	-0.7
3,470,529	-		HER17_RS15480	0.47	+0.6
3,470,569	+		HER17_RS15480	0.49	-0.0
3,470,577	-		HER17_RS15480	0.49	-0.0
3,470,584	+		HER17_RS15480	0.49	-1.6
3,470,584	+		HER17_RS15480	0.49	+0.4
3,470,585	-		HER17_RS15480	0.49	+1.2
3,470,585	-		HER17_RS15480	0.49	-2.4
3,470,735	+		HER17_RS15480	0.56	+0.8
3,470,745	+		HER17_RS15480	0.57	+0.8
3,470,745	+		HER17_RS15480	0.57	-0.6
3,470,746	-		HER17_RS15480	0.57	+0.8
3,470,747	+		HER17_RS15480	0.57	+1.8
3,470,747	+		HER17_RS15480	0.57	+0.4
3,470,747	+		HER17_RS15480	0.57	+0.4
3,470,747	+		HER17_RS15480	0.57	-0.8
3,470,748	-		HER17_RS15480	0.57	-0.9
3,470,815	+		HER17_RS15480	0.60	-2.1
3,470,815	+		HER17_RS15480	0.60	-0.4
3,470,816	-		HER17_RS15480	0.60	+0.6
3,470,816	-		HER17_RS15480	0.60	+0.9
3,470,816	-		HER17_RS15480	0.60	+0.1
3,470,816	-		HER17_RS15480	0.60	+1.0
3,470,865	+		HER17_RS15480	0.62	+0.4
3,470,865	+		HER17_RS15480	0.62	-0.1
3,470,865	+		HER17_RS15480	0.62	-1.6
3,470,908	+		HER17_RS15480	0.64	-2.1
3,470,909	-		HER17_RS15480	0.64	-0.6
3,470,946	-		HER17_RS15480	0.66	-0.7
3,470,946	-		HER17_RS15480	0.66	+0.9
3,470,974	+		HER17_RS15480	0.67	+0.3
3,470,974	+		HER17_RS15480	0.67	+0.1
3,470,978	+		HER17_RS15480	0.68	+1.3
3,470,993	+		HER17_RS15480	0.68	-0.2
3,470,993	+		HER17_RS15480	0.68	+0.6
3,470,993	+		HER17_RS15480	0.68	-0.4
3,470,994	-		HER17_RS15480	0.68	+0.9
3,470,994	-		HER17_RS15480	0.68	-1.8
3,470,994	-		HER17_RS15480	0.68	+0.3
3,471,005	+		HER17_RS15480	0.69	-1.6
3,471,005	+		HER17_RS15480	0.69	-1.9
3,471,006	-		HER17_RS15480	0.69	+0.7
3,471,006	-		HER17_RS15480	0.69	-0.5
3,471,015	-		HER17_RS15480	0.69	-0.1
3,471,040	+		HER17_RS15480	0.71	+1.7
3,471,041	-		HER17_RS15480	0.71	-1.0
3,471,043	+		HER17_RS15480	0.71	-0.8
3,471,043	+		HER17_RS15480	0.71	-2.0
3,471,052	+		HER17_RS15480	0.71	+0.2
3,471,082	+		HER17_RS15480	0.73	-0.4
3,471,082	+		HER17_RS15480	0.73	+0.7
3,471,089	+		HER17_RS15480	0.73	+1.3
3,471,114	+		HER17_RS15480	0.74	+0.7
3,471,114	+		HER17_RS15480	0.74	-0.9
3,471,115	-		HER17_RS15480	0.74	-0.2
3,471,241	-		HER17_RS15480	0.80	+0.4
3,471,241	-		HER17_RS15480	0.80	+0.9
3,471,281	+		HER17_RS15480	0.82	-1.0
3,471,281	+		HER17_RS15480	0.82	+0.1
3,471,281	+		HER17_RS15480	0.82	-1.0
3,471,281	+		HER17_RS15480	0.82	+0.4
3,471,281	+		HER17_RS15480	0.82	+0.4
3,471,282	-		HER17_RS15480	0.82	-1.2
3,471,282	-		HER17_RS15480	0.82	-2.2
3,471,282	-		HER17_RS15480	0.82	-0.1
3,471,282	-		HER17_RS15480	0.82	-0.4
3,471,282	-		HER17_RS15480	0.82	-0.7
3,471,287	+		HER17_RS15480	0.82	+1.8
3,471,287	+		HER17_RS15480	0.82	+0.3
3,471,288	-		HER17_RS15480	0.82	-0.8
3,471,334	+		HER17_RS15480	0.84	+1.4
3,471,334	+		HER17_RS15480	0.84	+0.7
3,471,334	+		HER17_RS15480	0.84	+0.7
3,471,334	+		HER17_RS15480	0.84	+0.0
3,471,334	+		HER17_RS15480	0.84	-0.1
3,471,335	-		HER17_RS15480	0.84	-1.0
3,471,335	-		HER17_RS15480	0.84	-0.8
3,471,355	+		HER17_RS15480	0.85	-1.8
3,471,440	+		HER17_RS15480	0.89	-0.0
3,471,441	-		HER17_RS15480	0.89	-2.4
3,471,479	+				+0.2
3,471,479	+				+0.4
3,471,491	+				+0.4
3,471,491	+				-2.0
3,471,491	+				-1.2
3,471,492	-				+0.0
3,471,492	-				-1.0
3,471,492	-				-0.5
3,471,492	-				-2.7
3,471,540	-				-2.3
3,471,587	+				+2.8
3,471,587	+				+3.1
3,471,587	+				-2.9
3,471,587	+				+2.9
3,471,588	-				+0.4
3,471,588	-				-0.4
3,471,588	-				+1.4
3,471,588	-				+0.5
3,471,679	-				-0.6
3,471,713	+				+0.2
3,471,713	+				+0.0
3,471,759	+				+0.5
3,471,761	+				-0.8
3,471,761	+				-0.9
3,471,762	-				-0.9
3,471,762	-				+0.6
3,471,764	+				-0.2
3,471,764	+				-0.8
3,471,764	+				-0.0
3,471,765	-				-2.0
3,471,776	-				-1.2
3,471,816	-				-0.1
3,471,816	-				+1.2
3,471,820	-				-1.8
3,471,827	+				+3.0
3,471,828	-				-1.7
3,471,828	-				-2.5
3,471,838	+				-0.7
3,471,838	+				-0.2
3,471,838	+				-0.1
3,471,838	+				+0.1
3,471,839	-				+0.3
3,471,953	+		HER17_RS15485	0.20	+0.5
3,471,953	+		HER17_RS15485	0.20	+0.1
3,471,984	-		HER17_RS15485	0.25	-0.7
3,471,994	+		HER17_RS15485	0.27	+0.2
3,471,995	-		HER17_RS15485	0.27	+0.8
3,471,995	-		HER17_RS15485	0.27	+1.0
3,471,995	-		HER17_RS15485	0.27	+0.5
3,471,995	-		HER17_RS15485	0.27	-0.2
3,471,995	-		HER17_RS15485	0.27	+0.3
3,472,047	+		HER17_RS15485	0.36	+1.0
3,472,047	+		HER17_RS15485	0.36	-2.5
3,472,048	-		HER17_RS15485	0.36	+1.2
3,472,048	-		HER17_RS15485	0.36	-3.3
3,472,048	-		HER17_RS15485	0.36	+0.8
3,472,048	-		HER17_RS15485	0.36	-0.3
3,472,048	-		HER17_RS15485	0.36	+0.4
3,472,065	+		HER17_RS15485	0.39	-0.8
3,472,072	+		HER17_RS15485	0.40	+0.2
3,472,073	-		HER17_RS15485	0.41	+0.8
3,472,136	+		HER17_RS15485	0.52	-0.5
3,472,170	-		HER17_RS15485	0.57	+0.5
3,472,186	-		HER17_RS15485	0.60	-0.8
3,472,186	-		HER17_RS15485	0.60	+1.4
3,472,193	+		HER17_RS15485	0.61	-1.1
3,472,194	-		HER17_RS15485	0.62	+0.4
3,472,202	+		HER17_RS15485	0.63	-0.1
3,472,203	-		HER17_RS15485	0.63	+0.9
3,472,203	-		HER17_RS15485	0.63	+0.2
3,472,203	-		HER17_RS15485	0.63	+1.1
3,472,244	+		HER17_RS15485	0.70	-2.2
3,472,244	+		HER17_RS15485	0.70	+1.2
3,472,244	+		HER17_RS15485	0.70	-0.2
3,472,245	-		HER17_RS15485	0.70	-1.8
3,472,245	-		HER17_RS15485	0.70	+0.2
3,472,266	+		HER17_RS15485	0.74	-0.1
3,472,266	+		HER17_RS15485	0.74	+0.4
3,472,346	+		HER17_RS15485	0.88	+0.3
3,472,346	+		HER17_RS15485	0.88	+0.9
3,472,346	+		HER17_RS15485	0.88	+0.7
3,472,346	+		HER17_RS15485	0.88	-1.2
3,472,346	+		HER17_RS15485	0.88	+0.4
3,472,346	+		HER17_RS15485	0.88	-1.0
3,472,346	+		HER17_RS15485	0.88	+0.6
3,472,346	+		HER17_RS15485	0.88	-1.1
3,472,346	+		HER17_RS15485	0.88	-0.0
3,472,346	+		HER17_RS15485	0.88	+1.3
3,472,346	+		HER17_RS15485	0.88	+2.6
3,472,346	+		HER17_RS15485	0.88	+0.5
3,472,347	-		HER17_RS15485	0.88	-0.5
3,472,347	-		HER17_RS15485	0.88	+1.2
3,472,347	-		HER17_RS15485	0.88	+1.6
3,472,347	-		HER17_RS15485	0.88	+0.4
3,472,347	-		HER17_RS15485	0.88	-0.6
3,472,348	+		HER17_RS15485	0.88	+1.1
3,472,348	+		HER17_RS15485	0.88	+0.2
3,472,349	-		HER17_RS15485	0.89	-1.6
3,472,412	+				+1.2
3,472,413	-				+1.3
3,472,417	+				-2.4
3,472,418	-				-0.9
3,472,418	-				-1.7
3,472,474	+				-1.2
3,472,474	+				+1.6
3,472,475	-				+0.7
3,472,475	-				-0.2
3,472,475	-				+1.8
3,472,485	+				+0.4
3,472,486	-				-0.1
3,472,486	-				-0.9
3,472,490	-				-0.1
3,472,490	-				-0.3
3,472,532	-				+1.4
3,472,532	-				+0.8
3,472,532	-				-1.8
3,472,532	-				+0.5
3,472,537	-				-0.8
3,472,604	+				+0.6
3,472,652	+				-2.4