Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS09645

Experiment: M9+glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose
2,125,906	-		HER17_RS09640	0.68	-1.9
2,125,950	-		HER17_RS09640	0.71	+0.4
2,125,952	-		HER17_RS09640	0.71	+0.7
2,125,952	-		HER17_RS09640	0.71	-0.8
2,125,952	-		HER17_RS09640	0.71	+0.7
2,125,955	+		HER17_RS09640	0.71	+0.6
2,125,956	-		HER17_RS09640	0.71	+1.1
2,125,956	-		HER17_RS09640	0.71	-0.4
2,125,982	-		HER17_RS09640	0.73	-1.2
2,125,991	+		HER17_RS09640	0.74	+0.1
2,125,992	-		HER17_RS09640	0.74	+1.1
2,126,011	+		HER17_RS09640	0.75	+0.1
2,126,011	+		HER17_RS09640	0.75	+0.7
2,126,011	+		HER17_RS09640	0.75	+0.1
2,126,012	-		HER17_RS09640	0.75	-0.8
2,126,066	+		HER17_RS09640	0.79	-0.1
2,126,066	+		HER17_RS09640	0.79	+0.5
2,126,066	+		HER17_RS09640	0.79	+1.8
2,126,066	+		HER17_RS09640	0.79	-1.6
2,126,066	+		HER17_RS09640	0.79	+0.5
2,126,066	+		HER17_RS09640	0.79	+1.7
2,126,066	+		HER17_RS09640	0.79	+0.6
2,126,066	+		HER17_RS09640	0.79	-0.7
2,126,066	+		HER17_RS09640	0.79	-1.7
2,126,066	+		HER17_RS09640	0.79	-0.0
2,126,067	-		HER17_RS09640	0.79	-0.9
2,126,067	-		HER17_RS09640	0.79	-1.3
2,126,067	-		HER17_RS09640	0.79	-1.4
2,126,067	-		HER17_RS09640	0.79	-1.2
2,126,067	-		HER17_RS09640	0.79	-0.4
2,126,067	-		HER17_RS09640	0.79	-0.2
2,126,068	+		HER17_RS09640	0.79	-0.3
2,126,069	-		HER17_RS09640	0.79	-1.0
2,126,123	-		HER17_RS09640	0.82	+1.7
2,126,168	+		HER17_RS09640	0.85	-0.7
2,126,168	+		HER17_RS09640	0.85	-2.6
2,126,234	+		HER17_RS09640	0.89	+0.5
2,126,235	-		HER17_RS09640	0.89	-0.5
2,126,241	-		HER17_RS09640	0.90	-1.3
2,126,270	+				-1.4
2,126,270	+				+0.2
2,126,270	+				-0.7
2,126,271	-				-0.1
2,126,271	-				+0.9
2,126,273	-				-1.3
2,126,309	+				-0.6
2,126,309	+				-3.0
2,126,309	+				+0.0
2,126,309	+				+0.8
2,126,310	-				-1.0
2,126,310	-				-0.7
2,126,310	-				-0.4
2,126,313	-				+1.0
2,126,313	-				+0.6
2,126,313	-				+1.1
2,126,313	-				+0.5
2,126,390	+				+0.1
2,126,390	+				+0.1
2,126,391	-				-0.2
2,126,391	-				-1.1
2,126,394	-				-0.4
2,126,399	+				+0.1
2,126,399	+				+0.8
2,126,399	+				-0.1
2,126,399	+				+0.2
2,126,400	-				+1.3
2,126,414	+				+0.3
2,126,414	+				-1.4
2,126,414	+				+0.6
2,126,438	-				-0.2
2,126,509	-				-0.1
2,126,531	+				-0.1
2,126,532	-				-1.7
2,126,593	+				-2.3
2,126,593	+				-1.6
2,126,606	-				-0.3
2,126,638	+				-0.0
2,126,638	+				+0.3
2,126,639	-				+0.4
2,126,647	+				-1.3
2,126,647	+				-1.4
2,126,653	+				+0.5
2,126,653	+				+1.4
2,126,668	+				-0.5
2,126,724	-				-0.8
2,126,760	+				-0.7
2,126,760	+				+0.8
2,126,761	-				-0.9
2,126,761	-				+0.1
2,126,987	-				-2.1
2,126,987	-				+0.1
2,126,993	+				+1.2
2,127,011	+				-0.4
2,127,011	+				+0.6
2,127,011	+				+2.7
2,127,012	-				-0.9
2,127,012	-				+0.0
2,127,162	-		HER17_RS09645	0.15	-0.5
2,127,183	+		HER17_RS09645	0.16	-2.1
2,127,237	+		HER17_RS09645	0.18	+2.3
2,127,365	+		HER17_RS09645	0.23	+0.4
2,127,500	+		HER17_RS09645	0.28	+0.1
2,127,616	+		HER17_RS09645	0.33	-0.3
2,127,616	+		HER17_RS09645	0.33	-0.3
2,127,616	+		HER17_RS09645	0.33	+0.7
2,128,000	-		HER17_RS09645	0.47	-0.1
2,128,014	-		HER17_RS09645	0.48	+1.7
2,128,078	-		HER17_RS09645	0.50	-0.8
2,128,148	+		HER17_RS09645	0.53	-3.0
2,128,213	+		HER17_RS09645	0.56	+0.5
2,128,213	+		HER17_RS09645	0.56	+1.5
2,128,213	+		HER17_RS09645	0.56	+1.1
2,128,213	+		HER17_RS09645	0.56	-0.4
2,128,214	-		HER17_RS09645	0.56	-1.3
2,128,332	+		HER17_RS09645	0.60	-1.9
2,128,405	+		HER17_RS09645	0.63	-0.6
2,128,405	+		HER17_RS09645	0.63	+0.7
2,128,406	-		HER17_RS09645	0.63	+1.0
2,128,406	-		HER17_RS09645	0.63	+1.2
2,128,496	+		HER17_RS09645	0.67	-0.7
2,128,557	+		HER17_RS09645	0.69	-1.6
2,128,558	-		HER17_RS09645	0.69	+0.9
2,128,586	+		HER17_RS09645	0.70	+0.6
2,128,586	+		HER17_RS09645	0.70	-1.1
2,128,586	+		HER17_RS09645	0.70	-1.1
2,128,587	-		HER17_RS09645	0.70	+0.0
2,128,587	-		HER17_RS09645	0.70	-0.4
2,128,683	+		HER17_RS09645	0.74	-3.4
2,128,776	-		HER17_RS09645	0.77	+0.7
2,128,829	+		HER17_RS09645	0.79	+0.6
2,128,830	-		HER17_RS09645	0.79	-0.2
2,128,852	+		HER17_RS09645	0.80	-0.1
2,128,853	-		HER17_RS09645	0.80	+0.5
2,128,853	-		HER17_RS09645	0.80	-0.7
2,128,855	+		HER17_RS09645	0.80	+0.5
2,128,855	+		HER17_RS09645	0.80	-2.6
2,128,855	+		HER17_RS09645	0.80	-0.3
2,128,855	+		HER17_RS09645	0.80	-0.2
2,128,856	-		HER17_RS09645	0.80	+1.1
2,128,856	-		HER17_RS09645	0.80	-1.8
2,128,856	-		HER17_RS09645	0.80	+0.1
2,128,865	+		HER17_RS09645	0.81	+0.7
2,128,934	+		HER17_RS09645	0.83	+0.3
2,128,942	+		HER17_RS09645	0.84	+0.9
2,128,942	+		HER17_RS09645	0.84	+0.0
2,128,942	+		HER17_RS09645	0.84	+1.1
2,128,942	+		HER17_RS09645	0.84	-2.2
2,129,012	+		HER17_RS09645	0.86	-0.3
2,129,049	-		HER17_RS09645	0.88	-0.2
2,129,101	+		HER17_RS09645	0.90	+0.7
2,129,108	+				+1.1
2,129,169	+				-0.2
2,129,169	+				-0.1
2,129,267	+				-0.5
2,129,268	-				-2.5
2,129,268	-				+0.1
2,129,271	+				+0.7
2,129,272	-				+0.7
2,129,299	+				-0.6
2,129,300	-				-0.6
2,129,300	-				+0.3
2,129,372	+				+0.9
2,129,373	-				+0.4
2,129,373	-				-1.1
2,129,408	-		HER17_RS09650	0.12	+2.4
2,129,408	-		HER17_RS09650	0.12	-1.4
2,129,486	+		HER17_RS09650	0.46	+1.6
2,129,486	+		HER17_RS09650	0.46	+0.7
2,129,487	-		HER17_RS09650	0.46	-0.1
2,129,487	-		HER17_RS09650	0.46	+0.6
2,129,487	-		HER17_RS09650	0.46	-1.9
2,129,529	-		HER17_RS09650	0.64	-0.1
2,129,664	+				+0.1
2,129,664	+				+0.5
2,129,732	+		HER17_RS09655	0.13	+1.5
2,129,785	+		HER17_RS09655	0.21	-1.8
2,129,795	+		HER17_RS09655	0.23	+2.8
2,129,852	-		HER17_RS09655	0.32	+0.5
2,129,852	-		HER17_RS09655	0.32	-0.6
2,129,939	+		HER17_RS09655	0.47	+0.3
2,129,939	+		HER17_RS09655	0.47	+0.5
2,129,939	+		HER17_RS09655	0.47	-0.8
2,129,940	-		HER17_RS09655	0.47	-2.1
2,129,940	-		HER17_RS09655	0.47	+1.0
2,129,940	-		HER17_RS09655	0.47	+0.7
2,129,970	+		HER17_RS09655	0.52	+0.6
2,129,972	+		HER17_RS09655	0.52	-0.6
2,129,972	+		HER17_RS09655	0.52	-0.9
2,129,973	-		HER17_RS09655	0.52	-2.1
2,130,097	+		HER17_RS09655	0.73	-1.4
2,130,098	-		HER17_RS09655	0.73	+0.2
2,130,098	-		HER17_RS09655	0.73	+1.4
2,130,150	+		HER17_RS09655	0.82	-1.1
2,130,150	+		HER17_RS09655	0.82	-0.9
2,130,151	-		HER17_RS09655	0.82	+0.1
2,130,151	-		HER17_RS09655	0.82	+1.1
2,130,151	-		HER17_RS09655	0.82	+0.4
2,130,219	-				-0.9
2,130,299	-				+0.2
2,130,324	-				-1.0
2,130,355	+				+0.2
2,130,356	-				+0.5