Experiment: M9+glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS07555 and HER17_RS07560 are separated by 122 nucleotides HER17_RS07560 and HER17_RS07565 are separated by 282 nucleotides HER17_RS07565 and HER17_RS07570 are separated by 1 nucleotides
HER17_RS07555: HER17_RS07555 - DUF6387 family protein, at 1,680,290 to 1,681,144
_RS07555
HER17_RS07560: HER17_RS07560 - AlpA family phage regulatory protein, at 1,681,267 to 1,681,425
_RS07560
HER17_RS07565: HER17_RS07565 - site-specific integrase, at 1,681,708 to 1,682,913
_RS07565
HER17_RS07570: HER17_RS07570 - site-specific integrase, at 1,682,915 to 1,684,225
_RS07570
Position (kb) 1681
1682
1683 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1680.872 kb on + strand, within HER17_RS07555 at 1680.873 kb on - strand, within HER17_RS07555 at 1680.873 kb on - strand, within HER17_RS07555 at 1680.897 kb on + strand, within HER17_RS07555 at 1680.898 kb on - strand, within HER17_RS07555 at 1681.006 kb on - strand, within HER17_RS07555 at 1681.032 kb on + strand, within HER17_RS07555 at 1681.120 kb on + strand at 1681.229 kb on - strand at 1681.854 kb on - strand, within HER17_RS07565 at 1681.950 kb on + strand, within HER17_RS07565 at 1681.973 kb on + strand, within HER17_RS07565 at 1682.179 kb on - strand, within HER17_RS07565 at 1682.745 kb on - strand, within HER17_RS07565 at 1682.828 kb on - strand at 1683.089 kb on + strand, within HER17_RS07570 at 1683.105 kb on - strand, within HER17_RS07570 at 1683.193 kb on - strand, within HER17_RS07570 at 1683.462 kb on + strand, within HER17_RS07570 at 1683.464 kb on + strand, within HER17_RS07570 at 1683.894 kb on + strand, within HER17_RS07570
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glucose remove 1,680,872 + HER17_RS07555 0.68 +1.8 1,680,873 - HER17_RS07555 0.68 -0.3 1,680,873 - HER17_RS07555 0.68 +0.4 1,680,897 + HER17_RS07555 0.71 +1.4 1,680,898 - HER17_RS07555 0.71 -0.9 1,681,006 - HER17_RS07555 0.84 +0.5 1,681,032 + HER17_RS07555 0.87 -2.5 1,681,120 + -0.6 1,681,229 - -3.8 1,681,854 - HER17_RS07565 0.12 -0.6 1,681,950 + HER17_RS07565 0.20 -0.0 1,681,973 + HER17_RS07565 0.22 +1.6 1,682,179 - HER17_RS07565 0.39 -0.9 1,682,745 - HER17_RS07565 0.86 -1.2 1,682,828 - +0.1 1,683,089 + HER17_RS07570 0.13 +0.9 1,683,105 - HER17_RS07570 0.14 -0.8 1,683,193 - HER17_RS07570 0.21 -2.4 1,683,462 + HER17_RS07570 0.42 -0.2 1,683,464 + HER17_RS07570 0.42 +1.5 1,683,894 + HER17_RS07570 0.75 -0.0
Or see this region's nucleotide sequence