Experiment: M9+glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS20390 and HER17_RS20395 overlap by 20 nucleotides HER17_RS20395 and HER17_RS20400 are separated by 1 nucleotides HER17_RS20400 and HER17_RS20405 overlap by 4 nucleotides HER17_RS20405 and HER17_RS20410 are separated by 295 nucleotides
HER17_RS20390: HER17_RS20390 - HesA/MoeB/ThiF family protein, at 4,570,092 to 4,570,886
_RS20390
HER17_RS20395: HER17_RS20395 - sulfur carrier protein ThiS, at 4,570,867 to 4,571,067
_RS20395
HER17_RS20400: HER17_RS20400 - thiazole synthase, at 4,571,069 to 4,571,854
_RS20400
HER17_RS20405: HER17_RS20405 - 2-iminoacetate synthase ThiH, at 4,571,851 to 4,572,972
_RS20405
HER17_RS20410: HER17_RS20410 - PLP-dependent aminotransferase family protein, at 4,573,268 to 4,574,704
_RS20410
Position (kb) 4571
4572
4573 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4570.852 kb on + strand at 4570.852 kb on + strand at 4570.940 kb on + strand, within HER17_RS20395 at 4571.095 kb on - strand at 4571.095 kb on - strand at 4571.178 kb on + strand, within HER17_RS20400 at 4571.178 kb on + strand, within HER17_RS20400 at 4571.179 kb on - strand, within HER17_RS20400 at 4571.179 kb on - strand, within HER17_RS20400 at 4571.254 kb on + strand, within HER17_RS20400 at 4571.255 kb on - strand, within HER17_RS20400 at 4571.257 kb on + strand, within HER17_RS20400 at 4571.257 kb on + strand, within HER17_RS20400 at 4571.257 kb on + strand, within HER17_RS20400 at 4571.258 kb on - strand, within HER17_RS20400 at 4571.378 kb on + strand, within HER17_RS20400 at 4571.378 kb on + strand, within HER17_RS20400 at 4571.378 kb on + strand, within HER17_RS20400 at 4571.379 kb on - strand, within HER17_RS20400 at 4571.779 kb on + strand at 4571.779 kb on + strand at 4571.779 kb on + strand at 4571.779 kb on + strand at 4571.780 kb on - strand at 4571.920 kb on - strand at 4571.920 kb on - strand at 4571.979 kb on + strand, within HER17_RS20405 at 4572.024 kb on - strand, within HER17_RS20405 at 4572.079 kb on + strand, within HER17_RS20405 at 4572.079 kb on + strand, within HER17_RS20405 at 4572.079 kb on + strand, within HER17_RS20405 at 4572.080 kb on - strand, within HER17_RS20405 at 4572.080 kb on - strand, within HER17_RS20405 at 4572.080 kb on - strand, within HER17_RS20405 at 4572.089 kb on + strand, within HER17_RS20405 at 4572.089 kb on + strand, within HER17_RS20405 at 4572.090 kb on - strand, within HER17_RS20405 at 4572.091 kb on + strand, within HER17_RS20405 at 4572.091 kb on + strand, within HER17_RS20405 at 4572.091 kb on + strand, within HER17_RS20405 at 4572.091 kb on + strand, within HER17_RS20405 at 4572.092 kb on - strand, within HER17_RS20405 at 4572.092 kb on - strand, within HER17_RS20405 at 4572.092 kb on - strand, within HER17_RS20405 at 4572.092 kb on - strand, within HER17_RS20405 at 4572.092 kb on - strand, within HER17_RS20405 at 4572.092 kb on - strand, within HER17_RS20405 at 4572.092 kb on - strand, within HER17_RS20405 at 4572.092 kb on - strand, within HER17_RS20405 at 4572.092 kb on - strand, within HER17_RS20405 at 4572.095 kb on + strand, within HER17_RS20405 at 4572.095 kb on + strand, within HER17_RS20405 at 4572.124 kb on + strand, within HER17_RS20405 at 4572.125 kb on - strand, within HER17_RS20405 at 4572.185 kb on + strand, within HER17_RS20405 at 4572.256 kb on - strand, within HER17_RS20405 at 4572.256 kb on - strand, within HER17_RS20405 at 4572.260 kb on + strand, within HER17_RS20405 at 4572.272 kb on - strand, within HER17_RS20405 at 4572.353 kb on - strand, within HER17_RS20405 at 4572.353 kb on - strand, within HER17_RS20405 at 4572.407 kb on - strand, within HER17_RS20405 at 4572.421 kb on + strand, within HER17_RS20405 at 4572.437 kb on + strand, within HER17_RS20405 at 4572.437 kb on + strand, within HER17_RS20405 at 4572.437 kb on + strand, within HER17_RS20405 at 4572.438 kb on - strand, within HER17_RS20405 at 4572.438 kb on - strand, within HER17_RS20405 at 4572.543 kb on + strand, within HER17_RS20405 at 4572.543 kb on + strand, within HER17_RS20405 at 4572.562 kb on + strand, within HER17_RS20405 at 4572.562 kb on + strand, within HER17_RS20405 at 4572.563 kb on - strand, within HER17_RS20405 at 4572.563 kb on - strand, within HER17_RS20405 at 4572.590 kb on + strand, within HER17_RS20405 at 4572.590 kb on + strand, within HER17_RS20405 at 4572.591 kb on - strand, within HER17_RS20405 at 4572.591 kb on - strand, within HER17_RS20405 at 4572.601 kb on + strand, within HER17_RS20405 at 4572.648 kb on + strand, within HER17_RS20405 at 4572.649 kb on - strand, within HER17_RS20405 at 4572.732 kb on + strand, within HER17_RS20405 at 4572.733 kb on - strand, within HER17_RS20405 at 4572.917 kb on + strand at 4572.917 kb on + strand at 4572.917 kb on + strand at 4572.918 kb on - strand at 4572.918 kb on - strand at 4572.918 kb on - strand at 4572.918 kb on - strand at 4572.918 kb on - strand at 4572.958 kb on + strand at 4572.958 kb on + strand at 4572.959 kb on - strand at 4572.959 kb on - strand at 4572.963 kb on - strand at 4572.970 kb on + strand at 4572.970 kb on + strand at 4572.974 kb on + strand at 4572.974 kb on + strand at 4572.974 kb on + strand at 4572.974 kb on + strand at 4572.975 kb on - strand at 4572.975 kb on - strand at 4572.985 kb on + strand at 4572.986 kb on - strand at 4572.986 kb on - strand at 4572.986 kb on - strand at 4572.990 kb on + strand at 4572.990 kb on + strand at 4573.001 kb on + strand at 4573.001 kb on + strand at 4573.002 kb on - strand at 4573.012 kb on + strand at 4573.054 kb on + strand at 4573.055 kb on - strand at 4573.131 kb on + strand at 4573.131 kb on + strand at 4573.131 kb on + strand at 4573.131 kb on + strand at 4573.131 kb on + strand at 4573.132 kb on - strand at 4573.132 kb on - strand at 4573.132 kb on - strand at 4573.137 kb on - strand at 4573.187 kb on - strand at 4573.187 kb on - strand at 4573.193 kb on + strand at 4573.193 kb on + strand at 4573.194 kb on - strand at 4573.194 kb on - strand at 4573.194 kb on - strand at 4573.198 kb on - strand at 4573.233 kb on + strand at 4573.266 kb on - strand at 4573.343 kb on + strand at 4573.344 kb on - strand at 4573.344 kb on - strand at 4573.368 kb on + strand at 4573.369 kb on - strand at 4573.369 kb on - strand at 4573.382 kb on - strand at 4573.382 kb on - strand at 4573.387 kb on + strand at 4573.433 kb on + strand, within HER17_RS20410 at 4573.433 kb on + strand, within HER17_RS20410 at 4573.433 kb on + strand, within HER17_RS20410 at 4573.434 kb on - strand, within HER17_RS20410 at 4573.466 kb on - strand, within HER17_RS20410 at 4573.548 kb on + strand, within HER17_RS20410 at 4573.548 kb on + strand, within HER17_RS20410 at 4573.548 kb on + strand, within HER17_RS20410 at 4573.549 kb on - strand, within HER17_RS20410 at 4573.567 kb on + strand, within HER17_RS20410 at 4573.567 kb on + strand, within HER17_RS20410 at 4573.567 kb on + strand, within HER17_RS20410 at 4573.567 kb on + strand, within HER17_RS20410 at 4573.568 kb on - strand, within HER17_RS20410 at 4573.568 kb on - strand, within HER17_RS20410 at 4573.568 kb on - strand, within HER17_RS20410 at 4573.568 kb on - strand, within HER17_RS20410 at 4573.568 kb on - strand, within HER17_RS20410 at 4573.574 kb on - strand, within HER17_RS20410 at 4573.583 kb on - strand, within HER17_RS20410 at 4573.590 kb on + strand, within HER17_RS20410 at 4573.590 kb on + strand, within HER17_RS20410 at 4573.611 kb on - strand, within HER17_RS20410 at 4573.623 kb on + strand, within HER17_RS20410 at 4573.623 kb on + strand, within HER17_RS20410 at 4573.623 kb on + strand, within HER17_RS20410 at 4573.623 kb on + strand, within HER17_RS20410 at 4573.624 kb on - strand, within HER17_RS20410 at 4573.624 kb on - strand, within HER17_RS20410 at 4573.624 kb on - strand, within HER17_RS20410 at 4573.692 kb on + strand, within HER17_RS20410 at 4573.693 kb on - strand, within HER17_RS20410 at 4573.700 kb on - strand, within HER17_RS20410 at 4573.790 kb on + strand, within HER17_RS20410 at 4573.790 kb on + strand, within HER17_RS20410 at 4573.790 kb on + strand, within HER17_RS20410 at 4573.791 kb on - strand, within HER17_RS20410 at 4573.791 kb on - strand, within HER17_RS20410 at 4573.791 kb on - strand, within HER17_RS20410 at 4573.818 kb on - strand, within HER17_RS20410 at 4573.837 kb on - strand, within HER17_RS20410 at 4573.842 kb on + strand, within HER17_RS20410 at 4573.954 kb on + strand, within HER17_RS20410
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glucose remove 4,570,852 + -0.2 4,570,852 + -1.1 4,570,940 + HER17_RS20395 0.36 -1.5 4,571,095 - -1.8 4,571,095 - +0.3 4,571,178 + HER17_RS20400 0.14 -3.3 4,571,178 + HER17_RS20400 0.14 -0.3 4,571,179 - HER17_RS20400 0.14 +0.5 4,571,179 - HER17_RS20400 0.14 +0.3 4,571,254 + HER17_RS20400 0.24 -2.2 4,571,255 - HER17_RS20400 0.24 -1.3 4,571,257 + HER17_RS20400 0.24 -1.4 4,571,257 + HER17_RS20400 0.24 -0.6 4,571,257 + HER17_RS20400 0.24 -1.9 4,571,258 - HER17_RS20400 0.24 -0.2 4,571,378 + HER17_RS20400 0.39 -1.8 4,571,378 + HER17_RS20400 0.39 -1.2 4,571,378 + HER17_RS20400 0.39 -1.1 4,571,379 - HER17_RS20400 0.39 -1.1 4,571,779 + -1.0 4,571,779 + -2.5 4,571,779 + +0.3 4,571,779 + -1.8 4,571,780 - -1.2 4,571,920 - -0.8 4,571,920 - -0.2 4,571,979 + HER17_RS20405 0.11 -0.3 4,572,024 - HER17_RS20405 0.15 -1.1 4,572,079 + HER17_RS20405 0.20 -1.2 4,572,079 + HER17_RS20405 0.20 -0.8 4,572,079 + HER17_RS20405 0.20 +0.9 4,572,080 - HER17_RS20405 0.20 -2.7 4,572,080 - HER17_RS20405 0.20 -1.1 4,572,080 - HER17_RS20405 0.20 -0.1 4,572,089 + HER17_RS20405 0.21 -1.3 4,572,089 + HER17_RS20405 0.21 -1.6 4,572,090 - HER17_RS20405 0.21 -0.2 4,572,091 + HER17_RS20405 0.21 -2.0 4,572,091 + HER17_RS20405 0.21 +1.5 4,572,091 + HER17_RS20405 0.21 -0.7 4,572,091 + HER17_RS20405 0.21 -2.0 4,572,092 - HER17_RS20405 0.21 -1.8 4,572,092 - HER17_RS20405 0.21 -0.5 4,572,092 - HER17_RS20405 0.21 -1.3 4,572,092 - HER17_RS20405 0.21 -1.8 4,572,092 - HER17_RS20405 0.21 -1.0 4,572,092 - HER17_RS20405 0.21 +1.3 4,572,092 - HER17_RS20405 0.21 -0.9 4,572,092 - HER17_RS20405 0.21 -0.7 4,572,092 - HER17_RS20405 0.21 +0.0 4,572,095 + HER17_RS20405 0.22 +1.2 4,572,095 + HER17_RS20405 0.22 -0.5 4,572,124 + HER17_RS20405 0.24 -0.5 4,572,125 - HER17_RS20405 0.24 -2.2 4,572,185 + HER17_RS20405 0.30 +0.6 4,572,256 - HER17_RS20405 0.36 -3.0 4,572,256 - HER17_RS20405 0.36 -0.2 4,572,260 + HER17_RS20405 0.36 -0.6 4,572,272 - HER17_RS20405 0.38 +0.2 4,572,353 - HER17_RS20405 0.45 -1.5 4,572,353 - HER17_RS20405 0.45 -1.8 4,572,407 - HER17_RS20405 0.50 -0.0 4,572,421 + HER17_RS20405 0.51 -2.4 4,572,437 + HER17_RS20405 0.52 -2.4 4,572,437 + HER17_RS20405 0.52 -1.0 4,572,437 + HER17_RS20405 0.52 +0.6 4,572,438 - HER17_RS20405 0.52 -2.4 4,572,438 - HER17_RS20405 0.52 -1.7 4,572,543 + HER17_RS20405 0.62 +0.1 4,572,543 + HER17_RS20405 0.62 -1.2 4,572,562 + HER17_RS20405 0.63 -1.8 4,572,562 + HER17_RS20405 0.63 -0.1 4,572,563 - HER17_RS20405 0.63 -1.7 4,572,563 - HER17_RS20405 0.63 -2.6 4,572,590 + HER17_RS20405 0.66 -2.1 4,572,590 + HER17_RS20405 0.66 -1.5 4,572,591 - HER17_RS20405 0.66 -0.8 4,572,591 - HER17_RS20405 0.66 -1.9 4,572,601 + HER17_RS20405 0.67 -1.3 4,572,648 + HER17_RS20405 0.71 -2.0 4,572,649 - HER17_RS20405 0.71 -1.3 4,572,732 + HER17_RS20405 0.79 -0.4 4,572,733 - HER17_RS20405 0.79 -2.2 4,572,917 + +0.3 4,572,917 + -0.5 4,572,917 + -0.8 4,572,918 - -1.0 4,572,918 - +0.2 4,572,918 - +0.3 4,572,918 - -2.4 4,572,918 - -1.2 4,572,958 + -1.4 4,572,958 + -2.8 4,572,959 - -0.7 4,572,959 - +1.2 4,572,963 - -2.9 4,572,970 + -0.0 4,572,970 + +0.3 4,572,974 + -1.7 4,572,974 + +0.7 4,572,974 + -1.8 4,572,974 + +1.0 4,572,975 - -0.2 4,572,975 - +1.7 4,572,985 + -2.0 4,572,986 - +0.2 4,572,986 - +0.2 4,572,986 - -0.1 4,572,990 + -1.2 4,572,990 + -0.5 4,573,001 + -0.2 4,573,001 + -1.0 4,573,002 - -0.5 4,573,012 + +0.5 4,573,054 + -0.1 4,573,055 - +0.6 4,573,131 + -0.1 4,573,131 + +0.2 4,573,131 + +0.6 4,573,131 + +2.1 4,573,131 + -0.5 4,573,132 - +0.1 4,573,132 - -0.8 4,573,132 - -0.1 4,573,137 - -0.0 4,573,187 - -1.0 4,573,187 - -0.2 4,573,193 + -0.5 4,573,193 + +0.3 4,573,194 - -1.3 4,573,194 - +1.5 4,573,194 - -0.7 4,573,198 - -0.4 4,573,233 + +0.2 4,573,266 - +1.3 4,573,343 + -0.2 4,573,344 - +0.7 4,573,344 - -2.3 4,573,368 + +1.9 4,573,369 - +0.8 4,573,369 - +0.3 4,573,382 - -0.4 4,573,382 - +0.4 4,573,387 + +1.3 4,573,433 + HER17_RS20410 0.11 +0.5 4,573,433 + HER17_RS20410 0.11 -0.5 4,573,433 + HER17_RS20410 0.11 +0.1 4,573,434 - HER17_RS20410 0.12 +0.1 4,573,466 - HER17_RS20410 0.14 -0.3 4,573,548 + HER17_RS20410 0.19 -1.3 4,573,548 + HER17_RS20410 0.19 -0.4 4,573,548 + HER17_RS20410 0.19 -0.9 4,573,549 - HER17_RS20410 0.20 -0.1 4,573,567 + HER17_RS20410 0.21 +0.5 4,573,567 + HER17_RS20410 0.21 +1.0 4,573,567 + HER17_RS20410 0.21 -0.7 4,573,567 + HER17_RS20410 0.21 -0.0 4,573,568 - HER17_RS20410 0.21 -0.0 4,573,568 - HER17_RS20410 0.21 -0.1 4,573,568 - HER17_RS20410 0.21 -0.2 4,573,568 - HER17_RS20410 0.21 +1.0 4,573,568 - HER17_RS20410 0.21 -0.6 4,573,574 - HER17_RS20410 0.21 -1.9 4,573,583 - HER17_RS20410 0.22 -2.7 4,573,590 + HER17_RS20410 0.22 +0.3 4,573,590 + HER17_RS20410 0.22 +0.5 4,573,611 - HER17_RS20410 0.24 -0.0 4,573,623 + HER17_RS20410 0.25 +1.8 4,573,623 + HER17_RS20410 0.25 +0.2 4,573,623 + HER17_RS20410 0.25 -0.6 4,573,623 + HER17_RS20410 0.25 -0.1 4,573,624 - HER17_RS20410 0.25 +0.6 4,573,624 - HER17_RS20410 0.25 +1.3 4,573,624 - HER17_RS20410 0.25 +0.5 4,573,692 + HER17_RS20410 0.30 +0.1 4,573,693 - HER17_RS20410 0.30 +0.5 4,573,700 - HER17_RS20410 0.30 +0.2 4,573,790 + HER17_RS20410 0.36 -0.9 4,573,790 + HER17_RS20410 0.36 +1.0 4,573,790 + HER17_RS20410 0.36 +0.9 4,573,791 - HER17_RS20410 0.36 -0.4 4,573,791 - HER17_RS20410 0.36 +2.1 4,573,791 - HER17_RS20410 0.36 +0.2 4,573,818 - HER17_RS20410 0.38 +1.1 4,573,837 - HER17_RS20410 0.40 +0.1 4,573,842 + HER17_RS20410 0.40 -1.4 4,573,954 + HER17_RS20410 0.48 -1.7
Or see this region's nucleotide sequence