Strain Fitness in Pectobacterium carotovorum WPP14

Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS18280

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	M9+glucose
				remove
4,119,873	-	HER17_RS18275	0.85	+0.9
4,119,947	+	HER17_RS18275	0.87	+0.9
4,119,948	-	HER17_RS18275	0.87	+1.3
4,119,976	-	HER17_RS18275	0.87	-0.3
4,120,201	+			-0.2
4,120,202	-			+0.8
4,120,326	+			+0.3
4,120,374	-			+0.1
4,120,392	+			-0.1
4,120,392	+			-0.7
4,120,392	+			-2.2
4,120,419	+			-0.2
4,120,511	+			-0.3
4,120,511	+			-0.4
4,120,512	-			+1.7
4,120,544	-			-1.5
4,120,570	+			+0.1
4,120,571	-			-2.4
4,120,660	+			-0.7
4,120,660	+			+0.1
4,120,660	+			+0.5
4,120,693	-			-0.0
4,120,693	-			-0.9
4,120,719	+			-1.7
4,120,719	+			+0.5
4,120,884	+			-1.1
4,120,884	+			+1.1
4,120,956	-			-1.0
4,120,967	+			+1.0
4,120,967	+			+0.1
4,121,137	+			-2.0
4,121,138	-			-0.7
4,121,171	+	HER17_RS18280	0.10	-1.0
4,121,172	-	HER17_RS18280	0.10	-0.6
4,121,237	+	HER17_RS18280	0.12	-0.3
4,121,238	-	HER17_RS18280	0.12	-0.2
4,121,238	-	HER17_RS18280	0.12	-2.6
4,121,238	-	HER17_RS18280	0.12	-2.2
4,121,246	-	HER17_RS18280	0.12	+0.6
4,121,265	-	HER17_RS18280	0.13	+0.3
4,121,265	-	HER17_RS18280	0.13	-0.6
4,121,270	+	HER17_RS18280	0.13	+0.8
4,121,270	+	HER17_RS18280	0.13	-1.3
4,121,270	+	HER17_RS18280	0.13	+0.8
4,121,270	+	HER17_RS18280	0.13	-0.1
4,121,299	+	HER17_RS18280	0.13	-0.5
4,121,299	+	HER17_RS18280	0.13	+0.4
4,121,300	-	HER17_RS18280	0.13	+0.9
4,121,300	-	HER17_RS18280	0.13	+0.4
4,121,300	-	HER17_RS18280	0.13	+2.7
4,121,300	-	HER17_RS18280	0.13	+0.9
4,121,379	+	HER17_RS18280	0.15	-0.3
4,121,411	+	HER17_RS18280	0.16	+0.9
4,121,412	-	HER17_RS18280	0.16	-1.7
4,121,436	-	HER17_RS18280	0.17	-0.9
4,121,436	-	HER17_RS18280	0.17	-1.4
4,121,436	-	HER17_RS18280	0.17	-1.1
4,121,437	+	HER17_RS18280	0.17	+0.2
4,121,437	+	HER17_RS18280	0.17	-2.9
4,121,438	-	HER17_RS18280	0.17	-1.3
4,121,522	+	HER17_RS18280	0.19	-2.6
4,121,598	+	HER17_RS18280	0.21	+0.4
4,121,654	+	HER17_RS18280	0.22	+0.4
4,121,655	-	HER17_RS18280	0.22	-0.0
4,121,655	-	HER17_RS18280	0.22	-0.4
4,121,671	+	HER17_RS18280	0.23	+0.7
4,121,675	+	HER17_RS18280	0.23	+0.3
4,121,676	-	HER17_RS18280	0.23	+1.0
4,121,755	-	HER17_RS18280	0.25	-0.0
4,121,775	+	HER17_RS18280	0.25	-0.2
4,121,794	+	HER17_RS18280	0.26	-0.4
4,121,794	+	HER17_RS18280	0.26	+0.3
4,121,795	-	HER17_RS18280	0.26	+0.6
4,121,856	-	HER17_RS18280	0.27	-1.7
4,121,876	+	HER17_RS18280	0.28	-1.0
4,121,876	+	HER17_RS18280	0.28	+1.7
4,121,877	-	HER17_RS18280	0.28	+0.2
4,121,879	-	HER17_RS18280	0.28	+0.7
4,121,893	+	HER17_RS18280	0.28	+1.0
4,121,893	+	HER17_RS18280	0.28	+0.3
4,121,894	-	HER17_RS18280	0.28	+1.0
4,121,894	-	HER17_RS18280	0.28	-0.1
4,121,894	-	HER17_RS18280	0.28	-0.1
4,121,894	-	HER17_RS18280	0.28	-0.1
4,121,894	-	HER17_RS18280	0.28	+3.2
4,121,894	-	HER17_RS18280	0.28	-0.3
4,121,897	+	HER17_RS18280	0.28	-0.0
4,121,897	+	HER17_RS18280	0.28	+1.0
4,121,897	+	HER17_RS18280	0.28	+0.9
4,121,897	+	HER17_RS18280	0.28	-1.0
4,121,897	+	HER17_RS18280	0.28	-2.9
4,121,898	-	HER17_RS18280	0.28	+0.3
4,121,898	-	HER17_RS18280	0.28	+1.0
4,121,898	-	HER17_RS18280	0.28	-0.7
4,121,898	-	HER17_RS18280	0.28	-1.5
4,121,898	-	HER17_RS18280	0.28	-0.6
4,121,906	-	HER17_RS18280	0.28	+0.2
4,121,945	+	HER17_RS18280	0.29	+0.9
4,121,945	+	HER17_RS18280	0.29	-0.1
4,121,990	+	HER17_RS18280	0.30	+0.9
4,121,991	-	HER17_RS18280	0.30	+1.0
4,121,991	-	HER17_RS18280	0.30	-0.3
4,121,993	-	HER17_RS18280	0.30	+0.9
4,122,011	+	HER17_RS18280	0.31	-0.6
4,122,011	+	HER17_RS18280	0.31	+1.1
4,122,012	-	HER17_RS18280	0.31	+0.1
4,122,039	+	HER17_RS18280	0.32	-0.1
4,122,040	-	HER17_RS18280	0.32	+0.4
4,122,045	+	HER17_RS18280	0.32	+0.4
4,122,045	+	HER17_RS18280	0.32	+0.7
4,122,045	+	HER17_RS18280	0.32	-0.7
4,122,089	+	HER17_RS18280	0.33	+0.2
4,122,090	-	HER17_RS18280	0.33	+0.8
4,122,090	-	HER17_RS18280	0.33	+0.2
4,122,090	-	HER17_RS18280	0.33	-0.0
4,122,090	-	HER17_RS18280	0.33	-1.2
4,122,090	-	HER17_RS18280	0.33	+0.0
4,122,090	-	HER17_RS18280	0.33	-0.5
4,122,102	+	HER17_RS18280	0.33	-0.9
4,122,103	-	HER17_RS18280	0.33	+2.5
4,122,350	+	HER17_RS18280	0.39	+0.7
4,122,350	+	HER17_RS18280	0.39	-1.5
4,122,350	+	HER17_RS18280	0.39	-1.0
4,122,350	+	HER17_RS18280	0.39	+1.9
4,122,351	-	HER17_RS18280	0.39	+0.8
4,122,351	-	HER17_RS18280	0.39	-0.1
4,122,452	+	HER17_RS18280	0.42	+0.1
4,122,453	-	HER17_RS18280	0.42	+1.0
4,122,453	-	HER17_RS18280	0.42	+0.7
4,122,453	-	HER17_RS18280	0.42	-0.7
4,122,455	+	HER17_RS18280	0.42	+0.6
4,122,455	+	HER17_RS18280	0.42	-1.2
4,122,455	+	HER17_RS18280	0.42	+1.6
4,122,455	+	HER17_RS18280	0.42	-0.5
4,122,455	+	HER17_RS18280	0.42	+0.6
4,122,455	+	HER17_RS18280	0.42	+1.9
4,122,456	-	HER17_RS18280	0.42	+0.7
4,122,456	-	HER17_RS18280	0.42	+0.3
4,122,481	-	HER17_RS18280	0.42	-0.6
4,122,497	+	HER17_RS18280	0.43	+0.1
4,122,497	+	HER17_RS18280	0.43	+0.5
4,122,497	+	HER17_RS18280	0.43	-0.3
4,122,497	+	HER17_RS18280	0.43	-1.6
4,122,497	+	HER17_RS18280	0.43	+0.1
4,122,497	+	HER17_RS18280	0.43	-0.2
4,122,497	+	HER17_RS18280	0.43	-0.9
4,122,498	-	HER17_RS18280	0.43	-2.7
4,122,498	-	HER17_RS18280	0.43	+1.3
4,122,498	-	HER17_RS18280	0.43	+0.2
4,122,498	-	HER17_RS18280	0.43	+1.4
4,122,498	-	HER17_RS18280	0.43	+1.0
4,122,498	-	HER17_RS18280	0.43	+0.5
4,122,498	-	HER17_RS18280	0.43	-1.2
4,122,498	-	HER17_RS18280	0.43	-0.3
4,122,498	-	HER17_RS18280	0.43	+0.3
4,122,498	-	HER17_RS18280	0.43	-0.5
4,122,566	+	HER17_RS18280	0.45	-0.2
4,122,567	-	HER17_RS18280	0.45	-0.7
4,122,615	-	HER17_RS18280	0.46	-2.0
4,122,615	-	HER17_RS18280	0.46	-2.4
4,122,618	+	HER17_RS18280	0.46	-1.5
4,122,619	-	HER17_RS18280	0.46	+0.8
4,122,634	+	HER17_RS18280	0.46	-0.4
4,122,635	-	HER17_RS18280	0.46	-1.2
4,122,686	+	HER17_RS18280	0.47	-0.1
4,122,687	-	HER17_RS18280	0.48	-0.1
4,122,687	-	HER17_RS18280	0.48	-0.3
4,122,695	+	HER17_RS18280	0.48	+0.4
4,122,695	+	HER17_RS18280	0.48	+0.0
4,122,695	+	HER17_RS18280	0.48	+2.0
4,122,695	+	HER17_RS18280	0.48	-0.6
4,122,695	+	HER17_RS18280	0.48	+0.1
4,122,695	+	HER17_RS18280	0.48	+0.1
4,122,696	-	HER17_RS18280	0.48	-0.0
4,122,696	-	HER17_RS18280	0.48	-0.7
4,122,696	-	HER17_RS18280	0.48	-2.5
4,122,696	-	HER17_RS18280	0.48	-0.3
4,122,696	-	HER17_RS18280	0.48	-1.2
4,122,696	-	HER17_RS18280	0.48	+1.1
4,122,737	-	HER17_RS18280	0.49	+0.5
4,122,882	+	HER17_RS18280	0.52	+0.2
4,122,883	-	HER17_RS18280	0.52	-0.1
4,122,903	+	HER17_RS18280	0.53	+1.4
4,122,904	-	HER17_RS18280	0.53	+0.1
4,122,924	+	HER17_RS18280	0.53	-0.7
4,122,924	+	HER17_RS18280	0.53	+1.5
4,122,925	-	HER17_RS18280	0.53	-1.3
4,122,925	-	HER17_RS18280	0.53	-0.3
4,122,933	-	HER17_RS18280	0.54	-1.0
4,122,933	-	HER17_RS18280	0.54	+0.7
4,122,960	+	HER17_RS18280	0.54	-0.5
4,122,968	-	HER17_RS18280	0.54	+1.9
4,122,968	-	HER17_RS18280	0.54	+0.3
4,123,032	+	HER17_RS18280	0.56	+0.6
4,123,032	+	HER17_RS18280	0.56	+0.5
4,123,033	-	HER17_RS18280	0.56	-1.0
4,123,118	+	HER17_RS18280	0.58	-1.0
4,123,193	+	HER17_RS18280	0.60	+0.8
4,123,193	+	HER17_RS18280	0.60	-0.1
4,123,193	+	HER17_RS18280	0.60	-0.7
4,123,194	-	HER17_RS18280	0.60	-0.3
4,123,197	+	HER17_RS18280	0.60	+0.8
4,123,197	+	HER17_RS18280	0.60	-0.7
4,123,198	-	HER17_RS18280	0.60	-0.6
4,123,236	+	HER17_RS18280	0.61	+2.3
4,123,247	+	HER17_RS18280	0.61	-1.3
4,123,317	-	HER17_RS18280	0.63	-0.0
4,123,317	-	HER17_RS18280	0.63	-1.5
4,123,317	-	HER17_RS18280	0.63	-0.3
4,123,352	-	HER17_RS18280	0.64	+0.9
4,123,506	+	HER17_RS18280	0.68	-0.4
4,123,506	+	HER17_RS18280	0.68	-1.1
4,123,507	-	HER17_RS18280	0.68	+0.7
4,123,507	-	HER17_RS18280	0.68	-0.7
4,123,519	+	HER17_RS18280	0.68	-0.6
4,123,520	-	HER17_RS18280	0.68	+0.1
4,123,541	-	HER17_RS18280	0.68	-1.0
4,123,584	-	HER17_RS18280	0.70	-2.1
4,123,620	+	HER17_RS18280	0.70	-0.0
4,123,652	+	HER17_RS18280	0.71	+0.2
4,123,652	+	HER17_RS18280	0.71	+0.1
4,123,653	-	HER17_RS18280	0.71	+0.4
4,123,653	-	HER17_RS18280	0.71	-0.8
4,123,653	-	HER17_RS18280	0.71	+1.3
4,123,653	-	HER17_RS18280	0.71	-0.1
4,123,654	+	HER17_RS18280	0.71	-0.7
4,123,654	+	HER17_RS18280	0.71	+0.2
4,123,654	+	HER17_RS18280	0.71	+0.5
4,123,654	+	HER17_RS18280	0.71	+0.2
4,123,654	+	HER17_RS18280	0.71	-0.4
4,123,654	+	HER17_RS18280	0.71	-1.7
4,123,654	+	HER17_RS18280	0.71	+0.2
4,123,655	-	HER17_RS18280	0.71	-2.0
4,123,655	-	HER17_RS18280	0.71	+0.1
4,123,655	-	HER17_RS18280	0.71	+0.3
4,123,655	-	HER17_RS18280	0.71	+1.9
4,123,655	-	HER17_RS18280	0.71	+0.3
4,123,655	-	HER17_RS18280	0.71	+0.7
4,123,680	+	HER17_RS18280	0.72	-1.5
4,123,713	+	HER17_RS18280	0.73	+0.1
4,123,714	-	HER17_RS18280	0.73	+1.3
4,123,719	-	HER17_RS18280	0.73	-0.7
4,123,884	+	HER17_RS18280	0.77	-1.9
4,123,885	-	HER17_RS18280	0.77	-0.4
4,123,885	-	HER17_RS18280	0.77	-1.7
4,124,045	-	HER17_RS18280	0.81	-2.3
4,124,093	+	HER17_RS18280	0.82	-1.0
4,124,135	+	HER17_RS18280	0.83	+2.0
4,124,135	+	HER17_RS18280	0.83	-0.2
4,124,135	+	HER17_RS18280	0.83	-0.5
4,124,135	+	HER17_RS18280	0.83	-0.4
4,124,135	+	HER17_RS18280	0.83	+0.2
4,124,135	+	HER17_RS18280	0.83	+1.1
4,124,135	+	HER17_RS18280	0.83	-2.0
4,124,136	-	HER17_RS18280	0.83	-3.1
4,124,136	-	HER17_RS18280	0.83	+0.7
4,124,136	-	HER17_RS18280	0.83	-1.3
4,124,140	+	HER17_RS18280	0.83	+0.2
4,124,174	+	HER17_RS18280	0.84	+1.0
4,124,175	-	HER17_RS18280	0.84	-3.1
4,124,175	-	HER17_RS18280	0.84	-0.5
4,124,251	-	HER17_RS18280	0.86	-2.3
4,124,253	+	HER17_RS18280	0.86	-0.3
4,124,253	+	HER17_RS18280	0.86	+0.4
4,124,278	+	HER17_RS18280	0.87	-0.3
4,124,278	+	HER17_RS18280	0.87	+0.2
4,124,278	+	HER17_RS18280	0.87	-2.2
4,124,278	+	HER17_RS18280	0.87	+0.6
4,124,279	-	HER17_RS18280	0.87	+0.6
4,124,279	-	HER17_RS18280	0.87	+0.5
4,124,279	-	HER17_RS18280	0.87	+1.6
4,124,319	+	HER17_RS18280	0.88	+0.3
4,124,334	+	HER17_RS18280	0.88	+0.5
4,124,419	+			+0.4
4,124,419	+			-0.0
4,124,419	+			+1.3
4,124,420	-			+0.1
4,124,572	+			+1.3
4,124,572	+			+0.8
4,124,593	+			-1.1
4,124,593	+			-0.1
4,124,593	+			+0.8
4,124,594	-			-0.4
4,124,597	+			+0.1
4,124,597	+			+0.8
4,124,598	-			-0.8
4,124,598	-			+0.9
4,124,598	-			-1.2
4,124,598	-			+0.1
4,124,598	-			+0.8
4,124,627	+			+0.3
4,124,649	+			-0.8
4,124,649	+			-0.3
4,124,650	-			+1.8
4,124,662	+			-2.7
4,124,663	-			+0.5
4,124,758	+			-0.6
4,124,758	+			+0.1
4,124,822	+			-0.1
4,124,866	+			+0.1
4,124,873	+			-0.4
4,124,873	+			-1.3
4,124,873	+			+0.7
4,124,873	+			-0.0
4,124,874	-			-1.2
4,124,874	-			-0.2
4,124,874	-			+0.5
4,124,969	+	HER17_RS18285	0.13	-0.2
4,124,973	+	HER17_RS18285	0.13	+0.0
4,124,973	+	HER17_RS18285	0.13	+0.6
4,124,973	+	HER17_RS18285	0.13	+1.3
4,124,974	-	HER17_RS18285	0.14	-0.8
4,125,016	+	HER17_RS18285	0.20	+0.3
4,125,031	-	HER17_RS18285	0.23	+1.1
4,125,040	+	HER17_RS18285	0.24	-1.2
4,125,070	-	HER17_RS18285	0.29	-2.4
4,125,107	+	HER17_RS18285	0.35	-0.1
4,125,107	+	HER17_RS18285	0.35	+0.5
4,125,114	+	HER17_RS18285	0.36	-2.5
4,125,114	+	HER17_RS18285	0.36	+0.6
4,125,115	-	HER17_RS18285	0.36	+1.0
4,125,121	-	HER17_RS18285	0.37	+0.1
4,125,121	-	HER17_RS18285	0.37	+0.5
4,125,187	+	HER17_RS18285	0.48	-0.2
4,125,213	+	HER17_RS18285	0.52	+1.1
4,125,239	-	HER17_RS18285	0.56	+1.0
4,125,261	-	HER17_RS18285	0.59	+2.6
4,125,272	+	HER17_RS18285	0.61	-1.2
4,125,303	+	HER17_RS18285	0.66	+3.3
4,125,303	+	HER17_RS18285	0.66	+0.3
4,125,304	-	HER17_RS18285	0.66	-1.2
4,125,304	-	HER17_RS18285	0.66	+0.8
4,125,325	+	HER17_RS18285	0.70	-0.5
4,125,326	-	HER17_RS18285	0.70	+0.4
4,125,326	-	HER17_RS18285	0.70	-1.3
4,125,326	-	HER17_RS18285	0.70	-1.4
4,125,326	-	HER17_RS18285	0.70	-0.4
4,125,348	+	HER17_RS18285	0.73	-0.9
4,125,368	+	HER17_RS18285	0.76	-0.4
4,125,368	+	HER17_RS18285	0.76	+0.8
4,125,368	+	HER17_RS18285	0.76	+0.3
4,125,368	+	HER17_RS18285	0.76	-1.9
4,125,368	+	HER17_RS18285	0.76	-1.7
4,125,369	-	HER17_RS18285	0.77	+0.8
4,125,369	-	HER17_RS18285	0.77	+0.4
4,125,369	-	HER17_RS18285	0.77	-0.7
4,125,369	-	HER17_RS18285	0.77	+0.3
4,125,369	-	HER17_RS18285	0.77	-0.7
4,125,372	+	HER17_RS18285	0.77	+0.1
4,125,372	+	HER17_RS18285	0.77	-0.1
4,125,373	-	HER17_RS18285	0.77	-0.8
4,125,437	+	HER17_RS18285	0.87	+1.3
4,125,438	-	HER17_RS18285	0.88	+0.4
4,125,438	-	HER17_RS18285	0.88	-1.0
4,125,442	+	HER17_RS18285	0.88	-1.4
4,125,529	+			-0.6
4,125,529	+			+0.1
4,125,536	+			-0.3
4,125,536	+			-0.1
4,125,537	-			-0.5
4,125,541	+			-2.6
4,125,541	+			+1.4
4,125,542	-			+0.8
4,125,550	+			+1.5
4,125,552	-			+1.6
4,125,555	+			+0.0
4,125,555	+			-0.0
4,125,556	-			-0.4
4,125,556	-			+1.5
4,125,556	-			+0.1
4,125,564	+			-1.5
4,125,565	-			-0.0
4,125,565	-			-2.5
4,125,596	+			+0.9
4,125,596	+			+0.5
4,125,668	+			+1.5
4,125,683	-	HER17_RS18290	0.11	+0.4
4,125,718	+	HER17_RS18290	0.15	+0.3
4,125,721	-	HER17_RS18290	0.15	-2.3
4,125,735	+	HER17_RS18290	0.16	+0.7
4,125,751	+	HER17_RS18290	0.18	+1.7
4,125,751	+	HER17_RS18290	0.18	+0.2
4,125,751	+	HER17_RS18290	0.18	+0.7
4,125,752	-	HER17_RS18290	0.18	-0.6
4,125,752	-	HER17_RS18290	0.18	+1.8
4,125,752	-	HER17_RS18290	0.18	-0.6
4,125,752	-	HER17_RS18290	0.18	+0.6
4,125,797	+	HER17_RS18290	0.23	+0.2
4,125,802	+	HER17_RS18290	0.23	-1.1
4,125,802	+	HER17_RS18290	0.23	+0.2
4,125,802	+	HER17_RS18290	0.23	+1.2

Or see this region's nucleotide sequence