Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS16305

Experiment: M9+glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS16300 and HER17_RS16305 are separated by 21 nucleotidesHER17_RS16305 and HER17_RS16310 are separated by 9 nucleotidesHER17_RS16310 and HER17_RS16315 are separated by 198 nucleotides HER17_RS16300: HER17_RS16300 - sigma E protease regulator RseP, at 3,678,830 to 3,680,185 _RS16300 HER17_RS16305: HER17_RS16305 - phosphatidate cytidylyltransferase, at 3,680,207 to 3,681,064 _RS16305 HER17_RS16310: HER17_RS16310 - (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase, at 3,681,074 to 3,681,835 _RS16310 HER17_RS16315: HER17_RS16315 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 3,682,034 to 3,683,230 _RS16315 Position (kb) 3680 3681 3682Strain fitness (log2 ratio) -3 -2 -1 0 1at 3679.271 kb on - strand, within HER17_RS16300at 3679.373 kb on - strand, within HER17_RS16300at 3679.454 kb on - strand, within HER17_RS16300at 3679.785 kb on - strand, within HER17_RS16300at 3679.826 kb on - strand, within HER17_RS16300at 3680.024 kb on - strand, within HER17_RS16300at 3680.186 kb on - strandat 3680.186 kb on - strandat 3680.190 kb on - strandat 3680.190 kb on - strandat 3680.196 kb on - strandat 3680.209 kb on - strandat 3680.219 kb on - strandat 3681.095 kb on - strandat 3681.095 kb on - strandat 3681.095 kb on - strandat 3681.866 kb on - strandat 3681.986 kb on - strandat 3681.988 kb on - strandat 3681.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glucose
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3,679,271 - HER17_RS16300 0.33 -0.7
3,679,373 - HER17_RS16300 0.40 -0.7
3,679,454 - HER17_RS16300 0.46 +0.3
3,679,785 - HER17_RS16300 0.70 -1.2
3,679,826 - HER17_RS16300 0.73 -3.0
3,680,024 - HER17_RS16300 0.88 +0.9
3,680,186 - -2.1
3,680,186 - +1.4
3,680,190 - +0.2
3,680,190 - +1.7
3,680,196 - -0.5
3,680,209 - +1.0
3,680,219 - -1.9
3,681,095 - -0.0
3,681,095 - -0.3
3,681,095 - -1.9
3,681,866 - +0.1
3,681,986 - +0.0
3,681,988 - +0.7
3,681,988 - -1.0

Or see this region's nucleotide sequence