Experiment: M9+glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS15630 and HER17_RS15635 are separated by 70 nucleotides HER17_RS15635 and HER17_RS15640 are separated by 380 nucleotides HER17_RS15640 and HER17_RS15645 are separated by 266 nucleotides
HER17_RS15630: HER17_RS15630 - TraB/GumN family protein, at 3,510,292 to 3,511,110
_RS15630
HER17_RS15635: HER17_RS15635 - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK, at 3,511,181 to 3,511,660
_RS15635
HER17_RS15640: HER17_RS15640 - glycosyl hydrolase family 28 protein, at 3,512,041 to 3,513,423
_RS15640
HER17_RS15645: HER17_RS15645 - GTPase, at 3,513,690 to 3,514,676
_RS15645
Position (kb) 3512
3513
3514 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3511.055 kb on - strand at 3511.122 kb on - strand at 3511.122 kb on - strand at 3511.148 kb on - strand at 3511.225 kb on + strand at 3511.230 kb on + strand, within HER17_RS15635 at 3511.231 kb on - strand, within HER17_RS15635 at 3511.238 kb on + strand, within HER17_RS15635 at 3511.238 kb on + strand, within HER17_RS15635 at 3511.238 kb on + strand, within HER17_RS15635 at 3511.239 kb on - strand, within HER17_RS15635 at 3511.313 kb on + strand, within HER17_RS15635 at 3511.314 kb on - strand, within HER17_RS15635 at 3511.316 kb on - strand, within HER17_RS15635 at 3511.316 kb on - strand, within HER17_RS15635 at 3511.436 kb on - strand, within HER17_RS15635 at 3511.515 kb on + strand, within HER17_RS15635 at 3511.516 kb on - strand, within HER17_RS15635 at 3511.658 kb on + strand at 3511.658 kb on + strand at 3511.659 kb on - strand at 3511.659 kb on - strand at 3511.671 kb on + strand at 3511.682 kb on - strand at 3511.698 kb on + strand at 3511.699 kb on - strand at 3511.699 kb on - strand at 3511.699 kb on - strand at 3511.699 kb on - strand at 3511.699 kb on - strand at 3511.718 kb on + strand at 3511.719 kb on - strand at 3511.762 kb on + strand at 3511.762 kb on + strand at 3511.762 kb on + strand at 3511.762 kb on + strand at 3511.762 kb on + strand at 3511.763 kb on - strand at 3511.763 kb on - strand at 3511.764 kb on + strand at 3511.765 kb on - strand at 3511.765 kb on - strand at 3511.765 kb on - strand at 3511.773 kb on + strand at 3511.898 kb on + strand at 3511.899 kb on - strand at 3511.899 kb on - strand at 3511.906 kb on + strand at 3511.906 kb on + strand at 3512.023 kb on + strand at 3512.024 kb on - strand at 3512.027 kb on + strand at 3512.032 kb on + strand at 3512.033 kb on - strand at 3512.035 kb on - strand at 3512.134 kb on + strand at 3512.169 kb on + strand at 3512.170 kb on - strand at 3512.212 kb on - strand, within HER17_RS15640 at 3512.216 kb on + strand, within HER17_RS15640 at 3512.216 kb on + strand, within HER17_RS15640 at 3512.216 kb on + strand, within HER17_RS15640 at 3512.288 kb on + strand, within HER17_RS15640 at 3512.288 kb on + strand, within HER17_RS15640 at 3512.288 kb on + strand, within HER17_RS15640 at 3512.288 kb on + strand, within HER17_RS15640 at 3512.374 kb on + strand, within HER17_RS15640 at 3512.374 kb on + strand, within HER17_RS15640 at 3512.375 kb on - strand, within HER17_RS15640 at 3512.406 kb on - strand, within HER17_RS15640 at 3512.409 kb on - strand, within HER17_RS15640 at 3512.454 kb on + strand, within HER17_RS15640 at 3512.455 kb on - strand, within HER17_RS15640 at 3512.455 kb on - strand, within HER17_RS15640 at 3512.455 kb on - strand, within HER17_RS15640 at 3512.459 kb on + strand, within HER17_RS15640 at 3512.488 kb on - strand, within HER17_RS15640 at 3512.502 kb on + strand, within HER17_RS15640 at 3512.503 kb on - strand, within HER17_RS15640 at 3512.503 kb on - strand, within HER17_RS15640 at 3512.516 kb on + strand, within HER17_RS15640 at 3512.517 kb on - strand, within HER17_RS15640 at 3512.517 kb on - strand, within HER17_RS15640 at 3512.627 kb on + strand, within HER17_RS15640 at 3512.627 kb on + strand, within HER17_RS15640 at 3512.627 kb on + strand, within HER17_RS15640 at 3512.627 kb on + strand, within HER17_RS15640 at 3512.627 kb on + strand, within HER17_RS15640 at 3512.627 kb on + strand, within HER17_RS15640 at 3512.627 kb on + strand, within HER17_RS15640 at 3512.627 kb on + strand, within HER17_RS15640 at 3512.627 kb on + strand, within HER17_RS15640 at 3512.627 kb on + strand, within HER17_RS15640 at 3512.628 kb on - strand, within HER17_RS15640 at 3512.628 kb on - strand, within HER17_RS15640 at 3512.628 kb on - strand, within HER17_RS15640 at 3512.628 kb on - strand, within HER17_RS15640 at 3512.628 kb on - strand, within HER17_RS15640 at 3512.628 kb on - strand, within HER17_RS15640 at 3512.628 kb on - strand, within HER17_RS15640 at 3512.628 kb on - strand, within HER17_RS15640 at 3512.628 kb on - strand, within HER17_RS15640 at 3512.628 kb on - strand, within HER17_RS15640 at 3512.700 kb on + strand, within HER17_RS15640 at 3512.700 kb on + strand, within HER17_RS15640 at 3512.700 kb on + strand, within HER17_RS15640 at 3512.701 kb on - strand, within HER17_RS15640 at 3512.701 kb on - strand, within HER17_RS15640 at 3512.710 kb on - strand, within HER17_RS15640 at 3512.711 kb on + strand, within HER17_RS15640 at 3512.711 kb on + strand, within HER17_RS15640 at 3512.711 kb on + strand, within HER17_RS15640 at 3512.711 kb on + strand, within HER17_RS15640 at 3512.711 kb on + strand, within HER17_RS15640 at 3512.711 kb on + strand, within HER17_RS15640 at 3512.711 kb on + strand, within HER17_RS15640 at 3512.711 kb on + strand, within HER17_RS15640 at 3512.712 kb on - strand, within HER17_RS15640 at 3512.712 kb on - strand, within HER17_RS15640 at 3512.712 kb on - strand, within HER17_RS15640 at 3512.712 kb on - strand, within HER17_RS15640 at 3512.712 kb on - strand, within HER17_RS15640 at 3512.712 kb on - strand, within HER17_RS15640 at 3512.712 kb on - strand, within HER17_RS15640 at 3512.721 kb on + strand, within HER17_RS15640 at 3512.722 kb on - strand, within HER17_RS15640 at 3512.725 kb on - strand, within HER17_RS15640 at 3512.725 kb on - strand, within HER17_RS15640 at 3512.763 kb on + strand, within HER17_RS15640 at 3512.764 kb on - strand, within HER17_RS15640 at 3512.796 kb on + strand, within HER17_RS15640 at 3512.883 kb on + strand, within HER17_RS15640 at 3512.886 kb on + strand, within HER17_RS15640 at 3512.898 kb on + strand, within HER17_RS15640 at 3512.900 kb on + strand, within HER17_RS15640 at 3512.901 kb on - strand, within HER17_RS15640 at 3512.901 kb on - strand, within HER17_RS15640 at 3512.901 kb on - strand, within HER17_RS15640 at 3513.009 kb on + strand, within HER17_RS15640 at 3513.010 kb on - strand, within HER17_RS15640 at 3513.010 kb on - strand, within HER17_RS15640 at 3513.013 kb on - strand, within HER17_RS15640 at 3513.036 kb on + strand, within HER17_RS15640 at 3513.074 kb on + strand, within HER17_RS15640 at 3513.075 kb on - strand, within HER17_RS15640 at 3513.155 kb on - strand, within HER17_RS15640 at 3513.155 kb on - strand, within HER17_RS15640 at 3513.159 kb on + strand, within HER17_RS15640 at 3513.160 kb on - strand, within HER17_RS15640 at 3513.160 kb on - strand, within HER17_RS15640 at 3513.160 kb on - strand, within HER17_RS15640 at 3513.188 kb on + strand, within HER17_RS15640 at 3513.188 kb on + strand, within HER17_RS15640 at 3513.188 kb on + strand, within HER17_RS15640 at 3513.188 kb on + strand, within HER17_RS15640 at 3513.188 kb on + strand, within HER17_RS15640 at 3513.189 kb on - strand, within HER17_RS15640 at 3513.189 kb on - strand, within HER17_RS15640 at 3513.189 kb on - strand, within HER17_RS15640 at 3513.193 kb on - strand, within HER17_RS15640 at 3513.280 kb on + strand, within HER17_RS15640 at 3513.310 kb on + strand at 3513.398 kb on - strand at 3513.423 kb on + strand at 3513.423 kb on + strand at 3513.423 kb on + strand at 3513.423 kb on + strand at 3513.423 kb on + strand at 3513.423 kb on + strand at 3513.423 kb on + strand at 3513.424 kb on - strand at 3513.424 kb on - strand at 3513.424 kb on - strand at 3513.424 kb on - strand at 3513.424 kb on - strand at 3513.424 kb on - strand at 3513.424 kb on - strand at 3513.427 kb on + strand at 3513.428 kb on - strand at 3513.525 kb on + strand at 3513.579 kb on + strand at 3513.579 kb on + strand at 3513.583 kb on + strand at 3513.584 kb on - strand at 3513.606 kb on - strand at 3513.634 kb on - strand at 3513.681 kb on + strand at 3513.682 kb on - strand at 3513.811 kb on + strand, within HER17_RS15645 at 3513.811 kb on + strand, within HER17_RS15645 at 3513.811 kb on + strand, within HER17_RS15645 at 3513.811 kb on + strand, within HER17_RS15645 at 3513.812 kb on - strand, within HER17_RS15645 at 3513.812 kb on - strand, within HER17_RS15645 at 3513.812 kb on - strand, within HER17_RS15645 at 3513.876 kb on - strand, within HER17_RS15645 at 3513.878 kb on - strand, within HER17_RS15645 at 3513.961 kb on + strand, within HER17_RS15645 at 3513.962 kb on - strand, within HER17_RS15645 at 3513.984 kb on - strand, within HER17_RS15645 at 3514.061 kb on + strand, within HER17_RS15645 at 3514.095 kb on + strand, within HER17_RS15645 at 3514.096 kb on - strand, within HER17_RS15645 at 3514.096 kb on - strand, within HER17_RS15645 at 3514.096 kb on - strand, within HER17_RS15645 at 3514.096 kb on - strand, within HER17_RS15645 at 3514.103 kb on - strand, within HER17_RS15645 at 3514.251 kb on + strand, within HER17_RS15645 at 3514.251 kb on + strand, within HER17_RS15645 at 3514.251 kb on + strand, within HER17_RS15645 at 3514.271 kb on + strand, within HER17_RS15645 at 3514.302 kb on - strand, within HER17_RS15645 at 3514.388 kb on + strand, within HER17_RS15645
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glucose remove 3,511,055 - +0.8 3,511,122 - -3.6 3,511,122 - +0.6 3,511,148 - -0.5 3,511,225 + -0.4 3,511,230 + HER17_RS15635 0.10 -0.1 3,511,231 - HER17_RS15635 0.10 -1.2 3,511,238 + HER17_RS15635 0.12 +1.7 3,511,238 + HER17_RS15635 0.12 +1.9 3,511,238 + HER17_RS15635 0.12 -0.2 3,511,239 - HER17_RS15635 0.12 +0.2 3,511,313 + HER17_RS15635 0.28 +0.6 3,511,314 - HER17_RS15635 0.28 +0.3 3,511,316 - HER17_RS15635 0.28 -2.8 3,511,316 - HER17_RS15635 0.28 +0.4 3,511,436 - HER17_RS15635 0.53 -0.1 3,511,515 + HER17_RS15635 0.70 -1.5 3,511,516 - HER17_RS15635 0.70 -2.0 3,511,658 + -0.1 3,511,658 + -1.0 3,511,659 - +0.2 3,511,659 - -0.5 3,511,671 + +0.6 3,511,682 - +0.6 3,511,698 + -0.3 3,511,699 - +0.7 3,511,699 - +1.3 3,511,699 - +0.3 3,511,699 - +4.1 3,511,699 - -0.7 3,511,718 + -1.2 3,511,719 - -0.2 3,511,762 + +1.0 3,511,762 + +1.4 3,511,762 + -0.6 3,511,762 + -2.7 3,511,762 + +1.2 3,511,763 - +1.3 3,511,763 - -3.5 3,511,764 + -0.5 3,511,765 - +0.5 3,511,765 - +0.5 3,511,765 - +0.4 3,511,773 + +0.5 3,511,898 + +0.8 3,511,899 - -0.0 3,511,899 - +0.2 3,511,906 + -0.6 3,511,906 + -0.1 3,512,023 + -0.2 3,512,024 - -1.5 3,512,027 + +0.9 3,512,032 + -0.2 3,512,033 - +1.3 3,512,035 - +0.0 3,512,134 + +1.3 3,512,169 + +1.4 3,512,170 - +1.2 3,512,212 - HER17_RS15640 0.12 -0.7 3,512,216 + HER17_RS15640 0.13 -1.2 3,512,216 + HER17_RS15640 0.13 +0.8 3,512,216 + HER17_RS15640 0.13 +0.6 3,512,288 + HER17_RS15640 0.18 +0.4 3,512,288 + HER17_RS15640 0.18 -0.3 3,512,288 + HER17_RS15640 0.18 -0.6 3,512,288 + HER17_RS15640 0.18 -0.0 3,512,374 + HER17_RS15640 0.24 -0.5 3,512,374 + HER17_RS15640 0.24 +0.7 3,512,375 - HER17_RS15640 0.24 +0.8 3,512,406 - HER17_RS15640 0.26 -0.7 3,512,409 - HER17_RS15640 0.27 +1.6 3,512,454 + HER17_RS15640 0.30 -0.2 3,512,455 - HER17_RS15640 0.30 -2.0 3,512,455 - HER17_RS15640 0.30 +1.6 3,512,455 - HER17_RS15640 0.30 +1.0 3,512,459 + HER17_RS15640 0.30 +0.8 3,512,488 - HER17_RS15640 0.32 -0.4 3,512,502 + HER17_RS15640 0.33 +0.3 3,512,503 - HER17_RS15640 0.33 +0.3 3,512,503 - HER17_RS15640 0.33 -0.0 3,512,516 + HER17_RS15640 0.34 +0.3 3,512,517 - HER17_RS15640 0.34 +1.2 3,512,517 - HER17_RS15640 0.34 -1.1 3,512,627 + HER17_RS15640 0.42 -1.7 3,512,627 + HER17_RS15640 0.42 +0.2 3,512,627 + HER17_RS15640 0.42 +1.4 3,512,627 + HER17_RS15640 0.42 +0.0 3,512,627 + HER17_RS15640 0.42 +0.8 3,512,627 + HER17_RS15640 0.42 -1.3 3,512,627 + HER17_RS15640 0.42 +0.8 3,512,627 + HER17_RS15640 0.42 -0.5 3,512,627 + HER17_RS15640 0.42 +0.1 3,512,627 + HER17_RS15640 0.42 +1.1 3,512,628 - HER17_RS15640 0.42 +0.2 3,512,628 - HER17_RS15640 0.42 -1.4 3,512,628 - HER17_RS15640 0.42 +0.1 3,512,628 - HER17_RS15640 0.42 -3.0 3,512,628 - HER17_RS15640 0.42 +1.0 3,512,628 - HER17_RS15640 0.42 +0.5 3,512,628 - HER17_RS15640 0.42 -0.4 3,512,628 - HER17_RS15640 0.42 -1.3 3,512,628 - HER17_RS15640 0.42 -0.3 3,512,628 - HER17_RS15640 0.42 +0.0 3,512,700 + HER17_RS15640 0.48 -1.0 3,512,700 + HER17_RS15640 0.48 -1.2 3,512,700 + HER17_RS15640 0.48 -0.4 3,512,701 - HER17_RS15640 0.48 -0.9 3,512,701 - HER17_RS15640 0.48 -0.2 3,512,710 - HER17_RS15640 0.48 -0.8 3,512,711 + HER17_RS15640 0.48 +0.2 3,512,711 + HER17_RS15640 0.48 +0.8 3,512,711 + HER17_RS15640 0.48 +0.3 3,512,711 + HER17_RS15640 0.48 +0.6 3,512,711 + HER17_RS15640 0.48 -0.8 3,512,711 + HER17_RS15640 0.48 -1.3 3,512,711 + HER17_RS15640 0.48 +0.6 3,512,711 + HER17_RS15640 0.48 -0.0 3,512,712 - HER17_RS15640 0.49 +0.8 3,512,712 - HER17_RS15640 0.49 -1.3 3,512,712 - HER17_RS15640 0.49 +0.0 3,512,712 - HER17_RS15640 0.49 +1.1 3,512,712 - HER17_RS15640 0.49 +0.2 3,512,712 - HER17_RS15640 0.49 -1.2 3,512,712 - HER17_RS15640 0.49 +1.6 3,512,721 + HER17_RS15640 0.49 -0.5 3,512,722 - HER17_RS15640 0.49 +0.6 3,512,725 - HER17_RS15640 0.49 +1.0 3,512,725 - HER17_RS15640 0.49 +0.3 3,512,763 + HER17_RS15640 0.52 +0.1 3,512,764 - HER17_RS15640 0.52 -1.2 3,512,796 + HER17_RS15640 0.55 +0.6 3,512,883 + HER17_RS15640 0.61 +0.7 3,512,886 + HER17_RS15640 0.61 -0.9 3,512,898 + HER17_RS15640 0.62 +1.0 3,512,900 + HER17_RS15640 0.62 -1.5 3,512,901 - HER17_RS15640 0.62 -1.2 3,512,901 - HER17_RS15640 0.62 -0.7 3,512,901 - HER17_RS15640 0.62 -0.4 3,513,009 + HER17_RS15640 0.70 +0.7 3,513,010 - HER17_RS15640 0.70 -0.3 3,513,010 - HER17_RS15640 0.70 -2.6 3,513,013 - HER17_RS15640 0.70 -3.3 3,513,036 + HER17_RS15640 0.72 +0.2 3,513,074 + HER17_RS15640 0.75 +0.5 3,513,075 - HER17_RS15640 0.75 -0.1 3,513,155 - HER17_RS15640 0.81 +1.3 3,513,155 - HER17_RS15640 0.81 -0.3 3,513,159 + HER17_RS15640 0.81 +0.6 3,513,160 - HER17_RS15640 0.81 +0.4 3,513,160 - HER17_RS15640 0.81 +0.8 3,513,160 - HER17_RS15640 0.81 +0.5 3,513,188 + HER17_RS15640 0.83 +0.1 3,513,188 + HER17_RS15640 0.83 -0.1 3,513,188 + HER17_RS15640 0.83 -0.1 3,513,188 + HER17_RS15640 0.83 +2.1 3,513,188 + HER17_RS15640 0.83 -0.0 3,513,189 - HER17_RS15640 0.83 +0.5 3,513,189 - HER17_RS15640 0.83 +0.8 3,513,189 - HER17_RS15640 0.83 -0.8 3,513,193 - HER17_RS15640 0.83 +0.1 3,513,280 + HER17_RS15640 0.90 +1.5 3,513,310 + -1.3 3,513,398 - +0.0 3,513,423 + -0.5 3,513,423 + +1.1 3,513,423 + -0.1 3,513,423 + -0.1 3,513,423 + -0.6 3,513,423 + +2.6 3,513,423 + -0.3 3,513,424 - +0.2 3,513,424 - -2.9 3,513,424 - +0.0 3,513,424 - +0.3 3,513,424 - -2.3 3,513,424 - -0.3 3,513,424 - +1.5 3,513,427 + -1.5 3,513,428 - +1.1 3,513,525 + -0.6 3,513,579 + -1.9 3,513,579 + -2.3 3,513,583 + -0.2 3,513,584 - -0.3 3,513,606 - +0.5 3,513,634 - +1.2 3,513,681 + +0.3 3,513,682 - +0.6 3,513,811 + HER17_RS15645 0.12 +0.5 3,513,811 + HER17_RS15645 0.12 +0.4 3,513,811 + HER17_RS15645 0.12 +0.8 3,513,811 + HER17_RS15645 0.12 -0.3 3,513,812 - HER17_RS15645 0.12 -0.6 3,513,812 - HER17_RS15645 0.12 +0.9 3,513,812 - HER17_RS15645 0.12 -0.7 3,513,876 - HER17_RS15645 0.19 -0.2 3,513,878 - HER17_RS15645 0.19 -1.0 3,513,961 + HER17_RS15645 0.27 +0.6 3,513,962 - HER17_RS15645 0.28 +0.9 3,513,984 - HER17_RS15645 0.30 +0.8 3,514,061 + HER17_RS15645 0.38 +0.9 3,514,095 + HER17_RS15645 0.41 -0.2 3,514,096 - HER17_RS15645 0.41 -0.4 3,514,096 - HER17_RS15645 0.41 +0.7 3,514,096 - HER17_RS15645 0.41 -0.3 3,514,096 - HER17_RS15645 0.41 +0.6 3,514,103 - HER17_RS15645 0.42 -0.0 3,514,251 + HER17_RS15645 0.57 +0.3 3,514,251 + HER17_RS15645 0.57 +0.9 3,514,251 + HER17_RS15645 0.57 -1.2 3,514,271 + HER17_RS15645 0.59 +0.2 3,514,302 - HER17_RS15645 0.62 -1.2 3,514,388 + HER17_RS15645 0.71 +1.1
Or see this region's nucleotide sequence