Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14585

Experiment: M9+glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS14580 and HER17_RS14585 overlap by 4 nucleotidesHER17_RS14585 and HER17_RS14590 are separated by 2 nucleotidesHER17_RS14590 and HER17_RS14595 are separated by 4 nucleotides HER17_RS14580: HER17_RS14580 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 3,279,366 to 3,280,478 _RS14580 HER17_RS14585: HER17_RS14585 - formyl transferase, at 3,280,475 to 3,281,668 _RS14585 HER17_RS14590: HER17_RS14590 - FdtA/QdtA family cupin domain-containing protein, at 3,281,671 to 3,282,063 _RS14590 HER17_RS14595: HER17_RS14595 - glucose-1-phosphate thymidylyltransferase RfbA, at 3,282,068 to 3,282,943 _RS14595 Position (kb) 3280 3281 3282Strain fitness (log2 ratio) -2 -1 0 1 2at 3279.546 kb on + strand, within HER17_RS14580at 3280.209 kb on + strand, within HER17_RS14580at 3280.515 kb on - strandat 3280.604 kb on + strand, within HER17_RS14585at 3281.836 kb on + strand, within HER17_RS14590

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glucose
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3,279,546 + HER17_RS14580 0.16 +2.1
3,280,209 + HER17_RS14580 0.76 +2.1
3,280,515 - -0.7
3,280,604 + HER17_RS14585 0.11 -2.6
3,281,836 + HER17_RS14590 0.42 -1.3

Or see this region's nucleotide sequence