Experiment: M9+glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS08515 and HER17_RS08520 are separated by 83 nucleotides HER17_RS08520 and HER17_RS08525 are separated by 155 nucleotides HER17_RS08525 and HER17_RS08530 are separated by 158 nucleotides HER17_RS08530 and HER17_RS08535 are separated by 851 nucleotides
HER17_RS08515: HER17_RS08515 - DUF523 domain-containing protein, at 1,871,722 to 1,872,228
_RS08515
HER17_RS08520: HER17_RS08520 - GhoT/OrtT family toxin, at 1,872,312 to 1,872,497
_RS08520
HER17_RS08525: HER17_RS08525 - hypothetical protein, at 1,872,653 to 1,872,952
_RS08525
HER17_RS08530: HER17_RS08530 - hypothetical protein, at 1,873,111 to 1,873,392
_RS08530
HER17_RS08535: HER17_RS08535 - methyl-accepting chemotaxis protein, at 1,874,244 to 1,875,908
_RS08535
Position (kb) 1873
1874 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1872.111 kb on + strand, within HER17_RS08515 at 1872.179 kb on + strand at 1872.222 kb on + strand at 1872.245 kb on + strand at 1872.246 kb on - strand at 1872.258 kb on + strand at 1872.258 kb on + strand at 1872.258 kb on + strand at 1872.295 kb on - strand at 1872.295 kb on - strand at 1872.295 kb on - strand at 1872.301 kb on + strand at 1872.302 kb on - strand at 1872.370 kb on - strand, within HER17_RS08520 at 1872.372 kb on + strand, within HER17_RS08520 at 1872.414 kb on + strand, within HER17_RS08520 at 1872.415 kb on - strand, within HER17_RS08520 at 1872.458 kb on - strand, within HER17_RS08520 at 1872.461 kb on + strand, within HER17_RS08520 at 1872.512 kb on - strand at 1872.533 kb on + strand at 1872.534 kb on - strand at 1872.605 kb on + strand at 1872.606 kb on - strand at 1872.613 kb on - strand at 1872.613 kb on - strand at 1872.615 kb on + strand at 1872.615 kb on + strand at 1872.615 kb on + strand at 1872.621 kb on + strand at 1872.624 kb on + strand at 1872.710 kb on - strand, within HER17_RS08525 at 1872.715 kb on + strand, within HER17_RS08525 at 1872.715 kb on + strand, within HER17_RS08525 at 1872.716 kb on - strand, within HER17_RS08525 at 1872.716 kb on - strand, within HER17_RS08525 at 1872.716 kb on - strand, within HER17_RS08525 at 1872.812 kb on + strand, within HER17_RS08525 at 1872.812 kb on + strand, within HER17_RS08525 at 1872.832 kb on + strand, within HER17_RS08525 at 1872.890 kb on + strand, within HER17_RS08525 at 1872.946 kb on + strand at 1872.950 kb on + strand at 1873.062 kb on - strand at 1873.368 kb on + strand at 1873.466 kb on + strand at 1873.512 kb on - strand at 1873.772 kb on + strand at 1873.858 kb on + strand at 1873.858 kb on + strand at 1873.858 kb on + strand at 1873.913 kb on + strand at 1873.913 kb on + strand at 1873.913 kb on + strand at 1873.914 kb on - strand at 1873.914 kb on - strand at 1874.081 kb on + strand at 1874.082 kb on - strand at 1874.114 kb on - strand at 1874.169 kb on + strand at 1874.212 kb on - strand at 1874.266 kb on + strand at 1874.266 kb on + strand at 1874.267 kb on - strand at 1874.317 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glucose remove 1,872,111 + HER17_RS08515 0.77 -3.6 1,872,179 + +0.2 1,872,222 + -2.9 1,872,245 + -1.9 1,872,246 - +0.7 1,872,258 + +0.7 1,872,258 + +0.0 1,872,258 + -0.6 1,872,295 - -1.1 1,872,295 - -0.7 1,872,295 - -1.1 1,872,301 + -2.2 1,872,302 - +0.7 1,872,370 - HER17_RS08520 0.31 -0.9 1,872,372 + HER17_RS08520 0.32 -1.2 1,872,414 + HER17_RS08520 0.55 +0.1 1,872,415 - HER17_RS08520 0.55 +0.8 1,872,458 - HER17_RS08520 0.78 +0.1 1,872,461 + HER17_RS08520 0.80 +0.4 1,872,512 - -0.3 1,872,533 + +0.0 1,872,534 - +0.3 1,872,605 + -0.9 1,872,606 - -0.0 1,872,613 - +0.1 1,872,613 - -0.3 1,872,615 + -0.9 1,872,615 + +1.4 1,872,615 + -2.9 1,872,621 + -1.0 1,872,624 + -1.9 1,872,710 - HER17_RS08525 0.19 +1.2 1,872,715 + HER17_RS08525 0.21 -0.4 1,872,715 + HER17_RS08525 0.21 -1.4 1,872,716 - HER17_RS08525 0.21 -0.1 1,872,716 - HER17_RS08525 0.21 -0.1 1,872,716 - HER17_RS08525 0.21 +0.5 1,872,812 + HER17_RS08525 0.53 +1.4 1,872,812 + HER17_RS08525 0.53 +0.5 1,872,832 + HER17_RS08525 0.60 +0.0 1,872,890 + HER17_RS08525 0.79 +0.6 1,872,946 + -0.6 1,872,950 + +0.5 1,873,062 - -0.5 1,873,368 + +1.1 1,873,466 + -0.1 1,873,512 - +1.7 1,873,772 + -0.6 1,873,858 + -0.8 1,873,858 + -0.6 1,873,858 + -1.0 1,873,913 + -0.3 1,873,913 + +0.6 1,873,913 + -3.0 1,873,914 - +0.6 1,873,914 - -1.3 1,874,081 + -0.9 1,874,082 - +0.4 1,874,114 - +0.6 1,874,169 + -0.1 1,874,212 - +1.5 1,874,266 + -1.1 1,874,266 + +1.4 1,874,267 - +0.1 1,874,317 + +0.3
Or see this region's nucleotide sequence