Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS04675

Experiment: M9+glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose
1,059,205	-		HER17_RS04670	0.13	-2.1
1,059,303	+		HER17_RS04670	0.22	+0.1
1,059,303	+		HER17_RS04670	0.22	+0.8
1,059,303	+		HER17_RS04670	0.22	+0.2
1,059,303	+		HER17_RS04670	0.22	-0.1
1,059,303	+		HER17_RS04670	0.22	-1.2
1,059,303	+		HER17_RS04670	0.22	-1.1
1,059,303	+		HER17_RS04670	0.22	+0.2
1,059,303	+		HER17_RS04670	0.22	+1.1
1,059,304	-		HER17_RS04670	0.22	+0.4
1,059,304	-		HER17_RS04670	0.22	+2.0
1,059,304	-		HER17_RS04670	0.22	-2.0
1,059,304	-		HER17_RS04670	0.22	-0.2
1,059,304	-		HER17_RS04670	0.22	-1.2
1,059,304	-		HER17_RS04670	0.22	+0.5
1,059,304	-		HER17_RS04670	0.22	-0.1
1,059,304	-		HER17_RS04670	0.22	+0.5
1,059,304	-		HER17_RS04670	0.22	-0.7
1,059,305	+		HER17_RS04670	0.22	-0.3
1,059,305	+		HER17_RS04670	0.22	-0.5
1,059,305	+		HER17_RS04670	0.22	-1.6
1,059,305	+		HER17_RS04670	0.22	-2.0
1,059,305	+		HER17_RS04670	0.22	-0.6
1,059,306	-		HER17_RS04670	0.22	-0.9
1,059,306	-		HER17_RS04670	0.22	-1.0
1,059,306	-		HER17_RS04670	0.22	+1.4
1,059,306	-		HER17_RS04670	0.22	-0.1
1,059,306	-		HER17_RS04670	0.22	+0.7
1,059,347	+		HER17_RS04670	0.26	+0.8
1,059,347	+		HER17_RS04670	0.26	-0.5
1,059,347	+		HER17_RS04670	0.26	+0.7
1,059,347	+		HER17_RS04670	0.26	+0.5
1,059,347	+		HER17_RS04670	0.26	+0.1
1,059,348	-		HER17_RS04670	0.26	+0.0
1,059,348	-		HER17_RS04670	0.26	-0.1
1,059,385	-		HER17_RS04670	0.30	-0.6
1,059,532	+		HER17_RS04670	0.44	+1.2
1,059,533	-		HER17_RS04670	0.44	+0.7
1,059,533	-		HER17_RS04670	0.44	-0.6
1,059,536	+		HER17_RS04670	0.44	-0.1
1,059,536	+		HER17_RS04670	0.44	+0.3
1,059,537	-		HER17_RS04670	0.44	+0.0
1,059,537	-		HER17_RS04670	0.44	-0.3
1,059,537	-		HER17_RS04670	0.44	+0.5
1,059,552	+		HER17_RS04670	0.46	+1.2
1,059,552	+		HER17_RS04670	0.46	+0.0
1,059,552	+		HER17_RS04670	0.46	+0.4
1,059,553	-		HER17_RS04670	0.46	-0.6
1,059,553	-		HER17_RS04670	0.46	+0.0
1,059,553	-		HER17_RS04670	0.46	+1.1
1,059,553	-		HER17_RS04670	0.46	+0.5
1,059,553	-		HER17_RS04670	0.46	+1.7
1,059,553	-		HER17_RS04670	0.46	+1.6
1,059,553	-		HER17_RS04670	0.46	-0.5
1,059,553	-		HER17_RS04670	0.46	+0.3
1,059,553	-		HER17_RS04670	0.46	+0.1
1,059,553	-		HER17_RS04670	0.46	-0.7
1,059,560	+		HER17_RS04670	0.46	+1.3
1,059,561	-		HER17_RS04670	0.46	-1.3
1,059,561	-		HER17_RS04670	0.46	-0.1
1,059,561	-		HER17_RS04670	0.46	-0.5
1,059,662	+		HER17_RS04670	0.56	-0.3
1,059,684	+		HER17_RS04670	0.58	+0.2
1,059,684	+		HER17_RS04670	0.58	-0.7
1,059,684	+		HER17_RS04670	0.58	-0.8
1,059,684	+		HER17_RS04670	0.58	+0.8
1,059,685	-		HER17_RS04670	0.58	+0.8
1,059,685	-		HER17_RS04670	0.58	+0.3
1,059,705	-		HER17_RS04670	0.60	+0.8
1,059,802	+		HER17_RS04670	0.69	+1.0
1,059,802	+		HER17_RS04670	0.69	-0.6
1,059,803	-		HER17_RS04670	0.69	-2.6
1,059,803	-		HER17_RS04670	0.69	-1.2
1,059,803	-		HER17_RS04670	0.69	+0.8
1,059,856	+		HER17_RS04670	0.74	+0.1
1,059,857	-		HER17_RS04670	0.74	-0.0
1,059,867	+		HER17_RS04670	0.75	+0.7
1,059,867	+		HER17_RS04670	0.75	+0.3
1,059,867	+		HER17_RS04670	0.75	-0.9
1,059,868	-		HER17_RS04670	0.75	-1.8
1,059,915	-		HER17_RS04670	0.80	-0.1
1,060,040	+				+0.2
1,060,060	+				+0.5
1,060,145	+				+0.4
1,060,162	+				-1.0
1,060,162	+				-1.8
1,060,163	-				+0.7
1,060,163	-				-2.1
1,060,182	-				-1.8
1,060,411	+		HER17_RS04675	0.15	-2.0
1,060,412	-		HER17_RS04675	0.15	-1.0
1,060,755	+		HER17_RS04675	0.38	-1.0
1,060,755	+		HER17_RS04675	0.38	-2.3
1,060,756	-		HER17_RS04675	0.38	+1.0
1,060,807	+		HER17_RS04675	0.42	-0.5
1,061,031	-		HER17_RS04675	0.57	-0.8
1,061,054	-		HER17_RS04675	0.59	-2.4
1,061,125	+		HER17_RS04675	0.64	-1.4
1,061,125	+		HER17_RS04675	0.64	-2.1
1,061,153	+		HER17_RS04675	0.66	-1.6
1,061,183	+		HER17_RS04675	0.68	+0.7
1,061,183	+		HER17_RS04675	0.68	-2.2
1,061,184	-		HER17_RS04675	0.68	-0.9
1,061,297	+		HER17_RS04675	0.75	-1.6
1,061,319	+		HER17_RS04675	0.77	-1.7
1,061,359	+		HER17_RS04675	0.80	-2.3
1,061,359	+		HER17_RS04675	0.80	-0.6
1,061,359	+		HER17_RS04675	0.80	-2.6
1,061,360	-		HER17_RS04675	0.80	-0.4
1,061,360	-		HER17_RS04675	0.80	-2.4
1,061,360	-		HER17_RS04675	0.80	+0.0
1,061,360	-		HER17_RS04675	0.80	-2.2
1,061,492	+		HER17_RS04675	0.89	-0.1
1,061,518	+				-0.6
1,061,518	+				-2.4
1,061,518	+				-1.6
1,061,519	-				-0.6
1,061,519	-				-3.9
1,061,519	-				-1.3
1,061,575	+				-1.0
1,061,575	+				-1.0
1,061,576	-				-0.4
1,061,613	-				-1.0
1,061,655	+				+1.8
1,061,656	-				-1.7
1,061,656	-				-3.4
1,061,681	-				-1.8
1,061,681	-				-0.6
1,061,762	+				-0.9
1,061,823	+				+1.0
1,061,824	-				-1.6
1,061,824	-				-1.0
1,061,897	+				-0.1
1,061,898	-				+0.7
1,061,909	+				+1.9
1,061,910	-				+1.4
1,061,913	+				+0.0
1,061,913	+				+1.1
1,061,914	-				-0.7
1,061,914	-				+1.3
1,061,914	-				-0.6
1,061,915	+				+0.2
1,061,916	-				+0.5
1,061,916	-				+0.8
1,061,953	+				+0.5
1,061,953	+				+0.3
1,061,953	+				-1.9
1,061,980	+				+0.8
1,061,980	+				+0.7
1,061,981	-				-0.3
1,061,985	+				+0.5
1,061,986	-				-1.2
1,062,015	+				-0.5
1,062,016	-				+0.7
1,062,016	-				-1.1
1,062,172	+		HER17_RS04680	0.41	-0.0
1,062,173	-		HER17_RS04680	0.41	+2.2
1,062,237	+		HER17_RS04680	0.55	-0.6
1,062,291	+		HER17_RS04680	0.66	+0.7
1,062,292	-		HER17_RS04680	0.67	-0.2
1,062,296	-		HER17_RS04680	0.68	+1.5
1,062,358	+		HER17_RS04680	0.81	-0.1
1,062,523	+				+0.1
1,062,523	+				+0.8
1,062,524	-				-0.9
1,062,524	-				-0.3
1,062,534	-				-2.3
1,062,534	-				-0.1
1,062,534	-				-0.8
1,062,534	-				-2.4
1,062,617	-				+0.3