Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00695

Experiment: M9+glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS00690 and HER17_RS00695 are separated by 69 nucleotidesHER17_RS00695 and HER17_RS00700 are separated by 59 nucleotides HER17_RS00690: HER17_RS00690 - DUF4132 domain-containing protein, at 157,048 to 160,767 _RS00690 HER17_RS00695: HER17_RS00695 - AAA family ATPase, at 160,837 to 161,946 _RS00695 HER17_RS00700: HER17_RS00700 - DUF5682 family protein, at 162,006 to 164,567 _RS00700 Position (kb) 160 161 162Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 159.957 kb on + strand, within HER17_RS00690at 159.981 kb on - strand, within HER17_RS00690at 160.040 kb on + strand, within HER17_RS00690at 160.041 kb on - strand, within HER17_RS00690at 160.057 kb on + strand, within HER17_RS00690at 160.057 kb on + strand, within HER17_RS00690at 160.057 kb on + strand, within HER17_RS00690at 160.057 kb on + strand, within HER17_RS00690at 160.058 kb on - strand, within HER17_RS00690at 160.058 kb on - strand, within HER17_RS00690at 160.108 kb on + strand, within HER17_RS00690at 160.108 kb on + strand, within HER17_RS00690at 160.108 kb on + strand, within HER17_RS00690at 160.108 kb on + strand, within HER17_RS00690at 160.108 kb on + strand, within HER17_RS00690at 160.108 kb on + strand, within HER17_RS00690at 160.108 kb on + strand, within HER17_RS00690at 160.108 kb on + strand, within HER17_RS00690at 160.108 kb on + strand, within HER17_RS00690at 160.108 kb on + strand, within HER17_RS00690at 160.109 kb on - strand, within HER17_RS00690at 160.109 kb on - strand, within HER17_RS00690at 160.109 kb on - strand, within HER17_RS00690at 160.109 kb on - strand, within HER17_RS00690at 160.109 kb on - strand, within HER17_RS00690at 160.109 kb on - strand, within HER17_RS00690at 160.109 kb on - strand, within HER17_RS00690at 160.109 kb on - strand, within HER17_RS00690at 160.109 kb on - strand, within HER17_RS00690at 160.217 kb on + strand, within HER17_RS00690at 160.217 kb on + strand, within HER17_RS00690at 160.217 kb on + strand, within HER17_RS00690at 160.217 kb on + strand, within HER17_RS00690at 160.217 kb on + strand, within HER17_RS00690at 160.218 kb on - strand, within HER17_RS00690at 160.218 kb on - strand, within HER17_RS00690at 160.221 kb on + strand, within HER17_RS00690at 160.222 kb on - strand, within HER17_RS00690at 160.222 kb on - strand, within HER17_RS00690at 160.222 kb on - strand, within HER17_RS00690at 160.333 kb on + strand, within HER17_RS00690at 160.334 kb on - strand, within HER17_RS00690at 160.334 kb on - strand, within HER17_RS00690at 160.335 kb on + strand, within HER17_RS00690at 160.336 kb on - strand, within HER17_RS00690at 160.336 kb on - strand, within HER17_RS00690at 160.468 kb on + strandat 160.513 kb on + strandat 160.567 kb on + strandat 160.568 kb on - strandat 160.568 kb on - strandat 160.644 kb on + strandat 160.645 kb on - strandat 160.658 kb on + strandat 160.693 kb on + strandat 160.774 kb on + strandat 160.774 kb on + strandat 160.785 kb on + strandat 160.785 kb on + strandat 160.786 kb on - strandat 160.786 kb on - strandat 160.786 kb on - strandat 160.810 kb on + strandat 160.810 kb on + strandat 160.810 kb on + strandat 160.811 kb on - strandat 160.811 kb on - strandat 160.868 kb on + strandat 160.868 kb on + strandat 160.868 kb on + strandat 160.907 kb on + strandat 160.908 kb on - strandat 160.987 kb on - strand, within HER17_RS00695at 161.006 kb on + strand, within HER17_RS00695at 161.006 kb on + strand, within HER17_RS00695at 161.007 kb on - strand, within HER17_RS00695at 161.007 kb on - strand, within HER17_RS00695at 161.007 kb on - strand, within HER17_RS00695at 161.007 kb on - strand, within HER17_RS00695at 161.010 kb on + strand, within HER17_RS00695at 161.011 kb on - strand, within HER17_RS00695at 161.202 kb on + strand, within HER17_RS00695at 161.203 kb on - strand, within HER17_RS00695at 161.209 kb on + strand, within HER17_RS00695at 161.210 kb on - strand, within HER17_RS00695at 161.210 kb on - strand, within HER17_RS00695at 161.210 kb on - strand, within HER17_RS00695at 161.221 kb on + strand, within HER17_RS00695at 161.222 kb on - strand, within HER17_RS00695at 161.434 kb on - strand, within HER17_RS00695at 161.471 kb on + strand, within HER17_RS00695at 161.472 kb on - strand, within HER17_RS00695at 161.472 kb on - strand, within HER17_RS00695at 161.472 kb on - strand, within HER17_RS00695at 161.506 kb on - strand, within HER17_RS00695at 161.557 kb on - strand, within HER17_RS00695at 161.571 kb on + strand, within HER17_RS00695at 161.572 kb on - strand, within HER17_RS00695at 161.667 kb on + strand, within HER17_RS00695at 161.762 kb on - strand, within HER17_RS00695at 161.851 kb on - strandat 161.851 kb on - strandat 161.851 kb on - strandat 161.860 kb on + strandat 161.860 kb on + strandat 161.860 kb on + strandat 161.860 kb on + strandat 161.860 kb on + strandat 161.861 kb on - strandat 161.861 kb on - strandat 161.861 kb on - strandat 161.861 kb on - strandat 161.861 kb on - strandat 161.861 kb on - strandat 161.861 kb on - strandat 161.917 kb on + strandat 161.918 kb on - strandat 161.918 kb on - strandat 161.918 kb on - strandat 161.918 kb on - strandat 161.918 kb on - strandat 161.918 kb on - strandat 161.945 kb on - strandat 162.087 kb on + strandat 162.127 kb on - strandat 162.127 kb on - strandat 162.195 kb on - strandat 162.339 kb on + strand, within HER17_RS00700at 162.398 kb on + strand, within HER17_RS00700at 162.477 kb on + strand, within HER17_RS00700at 162.478 kb on - strand, within HER17_RS00700at 162.478 kb on - strand, within HER17_RS00700at 162.478 kb on - strand, within HER17_RS00700at 162.523 kb on - strand, within HER17_RS00700at 162.556 kb on + strand, within HER17_RS00700at 162.557 kb on - strand, within HER17_RS00700at 162.557 kb on - strand, within HER17_RS00700at 162.557 kb on - strand, within HER17_RS00700at 162.617 kb on - strand, within HER17_RS00700at 162.645 kb on + strand, within HER17_RS00700at 162.646 kb on - strand, within HER17_RS00700at 162.695 kb on + strand, within HER17_RS00700at 162.695 kb on + strand, within HER17_RS00700at 162.695 kb on + strand, within HER17_RS00700at 162.695 kb on + strand, within HER17_RS00700at 162.696 kb on - strand, within HER17_RS00700at 162.696 kb on - strand, within HER17_RS00700at 162.696 kb on - strand, within HER17_RS00700at 162.708 kb on - strand, within HER17_RS00700at 162.846 kb on + strand, within HER17_RS00700at 162.913 kb on + strand, within HER17_RS00700at 162.914 kb on - strand, within HER17_RS00700at 162.930 kb on + strand, within HER17_RS00700

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glucose
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159,957 + HER17_RS00690 0.78 +1.3
159,981 - HER17_RS00690 0.79 +0.6
160,040 + HER17_RS00690 0.80 +1.5
160,041 - HER17_RS00690 0.80 +0.0
160,057 + HER17_RS00690 0.81 -0.2
160,057 + HER17_RS00690 0.81 -2.1
160,057 + HER17_RS00690 0.81 +0.6
160,057 + HER17_RS00690 0.81 +0.3
160,058 - HER17_RS00690 0.81 +1.2
160,058 - HER17_RS00690 0.81 -0.2
160,108 + HER17_RS00690 0.82 +1.4
160,108 + HER17_RS00690 0.82 +0.4
160,108 + HER17_RS00690 0.82 +0.8
160,108 + HER17_RS00690 0.82 +0.7
160,108 + HER17_RS00690 0.82 +0.3
160,108 + HER17_RS00690 0.82 -0.8
160,108 + HER17_RS00690 0.82 +1.2
160,108 + HER17_RS00690 0.82 +1.3
160,108 + HER17_RS00690 0.82 +0.1
160,108 + HER17_RS00690 0.82 -0.1
160,109 - HER17_RS00690 0.82 +0.3
160,109 - HER17_RS00690 0.82 +0.3
160,109 - HER17_RS00690 0.82 +0.8
160,109 - HER17_RS00690 0.82 -1.3
160,109 - HER17_RS00690 0.82 -0.6
160,109 - HER17_RS00690 0.82 +0.4
160,109 - HER17_RS00690 0.82 -2.5
160,109 - HER17_RS00690 0.82 +0.7
160,109 - HER17_RS00690 0.82 +0.9
160,217 + HER17_RS00690 0.85 -0.0
160,217 + HER17_RS00690 0.85 -0.5
160,217 + HER17_RS00690 0.85 +0.3
160,217 + HER17_RS00690 0.85 -2.0
160,217 + HER17_RS00690 0.85 -3.0
160,218 - HER17_RS00690 0.85 -2.0
160,218 - HER17_RS00690 0.85 -0.1
160,221 + HER17_RS00690 0.85 +0.2
160,222 - HER17_RS00690 0.85 +0.7
160,222 - HER17_RS00690 0.85 +0.1
160,222 - HER17_RS00690 0.85 +0.2
160,333 + HER17_RS00690 0.88 +0.1
160,334 - HER17_RS00690 0.88 +1.0
160,334 - HER17_RS00690 0.88 -1.8
160,335 + HER17_RS00690 0.88 +0.6
160,336 - HER17_RS00690 0.88 -1.4
160,336 - HER17_RS00690 0.88 -0.2
160,468 + +0.0
160,513 + +0.9
160,567 + -0.7
160,568 - -1.4
160,568 - +0.9
160,644 + +0.5
160,645 - -0.6
160,658 + -0.1
160,693 + -0.1
160,774 + +0.9
160,774 + -0.3
160,785 + +0.1
160,785 + +0.2
160,786 - +0.0
160,786 - +0.9
160,786 - -1.2
160,810 + +0.6
160,810 + +1.4
160,810 + -1.9
160,811 - +1.4
160,811 - -0.2
160,868 + -0.8
160,868 + +0.4
160,868 + -0.4
160,907 + -1.9
160,908 - -0.3
160,987 - HER17_RS00695 0.14 +2.0
161,006 + HER17_RS00695 0.15 -0.2
161,006 + HER17_RS00695 0.15 +0.1
161,007 - HER17_RS00695 0.15 -0.6
161,007 - HER17_RS00695 0.15 -0.2
161,007 - HER17_RS00695 0.15 +0.7
161,007 - HER17_RS00695 0.15 +0.5
161,010 + HER17_RS00695 0.16 +3.7
161,011 - HER17_RS00695 0.16 +1.3
161,202 + HER17_RS00695 0.33 -0.2
161,203 - HER17_RS00695 0.33 -2.1
161,209 + HER17_RS00695 0.34 +0.7
161,210 - HER17_RS00695 0.34 +1.9
161,210 - HER17_RS00695 0.34 +0.6
161,210 - HER17_RS00695 0.34 -0.5
161,221 + HER17_RS00695 0.35 -3.0
161,222 - HER17_RS00695 0.35 +0.2
161,434 - HER17_RS00695 0.54 +0.6
161,471 + HER17_RS00695 0.57 +0.5
161,472 - HER17_RS00695 0.57 -1.0
161,472 - HER17_RS00695 0.57 +1.0
161,472 - HER17_RS00695 0.57 -0.2
161,506 - HER17_RS00695 0.60 +0.9
161,557 - HER17_RS00695 0.65 +1.2
161,571 + HER17_RS00695 0.66 +0.4
161,572 - HER17_RS00695 0.66 -1.0
161,667 + HER17_RS00695 0.75 +0.5
161,762 - HER17_RS00695 0.83 +0.8
161,851 - -2.6
161,851 - +0.6
161,851 - -0.2
161,860 + +1.7
161,860 + +0.8
161,860 + +0.1
161,860 + +1.6
161,860 + -0.0
161,861 - +0.6
161,861 - +1.6
161,861 - +1.9
161,861 - -1.0
161,861 - -0.4
161,861 - -0.7
161,861 - -1.0
161,917 + -0.8
161,918 - +0.2
161,918 - +0.5
161,918 - +0.6
161,918 - -2.8
161,918 - -0.0
161,918 - +0.6
161,945 - -0.1
162,087 + -0.6
162,127 - -0.8
162,127 - -3.7
162,195 - -1.4
162,339 + HER17_RS00700 0.13 -0.9
162,398 + HER17_RS00700 0.15 -2.1
162,477 + HER17_RS00700 0.18 +2.3
162,478 - HER17_RS00700 0.18 +1.1
162,478 - HER17_RS00700 0.18 -1.0
162,478 - HER17_RS00700 0.18 +0.7
162,523 - HER17_RS00700 0.20 +0.1
162,556 + HER17_RS00700 0.21 -0.4
162,557 - HER17_RS00700 0.22 -1.9
162,557 - HER17_RS00700 0.22 -0.8
162,557 - HER17_RS00700 0.22 +1.2
162,617 - HER17_RS00700 0.24 -1.0
162,645 + HER17_RS00700 0.25 +0.2
162,646 - HER17_RS00700 0.25 +1.1
162,695 + HER17_RS00700 0.27 +0.4
162,695 + HER17_RS00700 0.27 -0.2
162,695 + HER17_RS00700 0.27 +1.3
162,695 + HER17_RS00700 0.27 +0.8
162,696 - HER17_RS00700 0.27 -2.1
162,696 - HER17_RS00700 0.27 +0.1
162,696 - HER17_RS00700 0.27 -1.6
162,708 - HER17_RS00700 0.27 -0.6
162,846 + HER17_RS00700 0.33 -2.2
162,913 + HER17_RS00700 0.35 +0.4
162,914 - HER17_RS00700 0.35 -0.9
162,930 + HER17_RS00700 0.36 +0.9

Or see this region's nucleotide sequence