Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21700

Experiment: M9+glucose+arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose+arginine
4,005,210	+		DDA3937_RS17585	0.60	+0.4
4,005,210	+		DDA3937_RS17585	0.60	-0.8
4,005,210	+		DDA3937_RS17585	0.60	-1.8
4,005,211	-		DDA3937_RS17585	0.60	+0.3
4,005,235	-		DDA3937_RS17585	0.61	-0.6
4,005,238	-		DDA3937_RS17585	0.62	-0.2
4,005,308	+		DDA3937_RS17585	0.66	+0.5
4,005,309	-		DDA3937_RS17585	0.66	+0.3
4,005,309	-		DDA3937_RS17585	0.66	+2.1
4,005,421	+		DDA3937_RS17585	0.73	-1.7
4,005,422	-		DDA3937_RS17585	0.73	+0.3
4,005,422	-		DDA3937_RS17585	0.73	-0.4
4,005,423	+		DDA3937_RS17585	0.73	+0.2
4,005,667	+		DDA3937_RS17585	0.88	+0.0
4,005,667	+		DDA3937_RS17585	0.88	-1.6
4,005,667	+		DDA3937_RS17585	0.88	-0.6
4,005,667	+		DDA3937_RS17585	0.88	+0.1
4,005,667	+		DDA3937_RS17585	0.88	-1.2
4,005,667	+		DDA3937_RS17585	0.88	+0.1
4,005,667	+		DDA3937_RS17585	0.88	-0.7
4,005,667	+		DDA3937_RS17585	0.88	+0.1
4,005,667	+		DDA3937_RS17585	0.88	-0.6
4,005,667	+		DDA3937_RS17585	0.88	-2.0
4,005,667	+		DDA3937_RS17585	0.88	+0.8
4,005,667	+		DDA3937_RS17585	0.88	-1.9
4,005,668	-		DDA3937_RS17585	0.88	-3.4
4,005,668	-		DDA3937_RS17585	0.88	+0.9
4,005,668	-		DDA3937_RS17585	0.88	-1.8
4,005,668	-		DDA3937_RS17585	0.88	-0.1
4,005,668	-		DDA3937_RS17585	0.88	+0.6
4,005,669	+		DDA3937_RS17585	0.88	+0.2
4,005,669	+		DDA3937_RS17585	0.88	+0.3
4,005,669	+		DDA3937_RS17585	0.88	-0.2
4,005,669	+		DDA3937_RS17585	0.88	+1.7
4,005,670	-		DDA3937_RS17585	0.88	+0.8
4,005,670	-		DDA3937_RS17585	0.88	+0.9
4,005,670	-		DDA3937_RS17585	0.88	-0.2
4,005,748	-				+0.7
4,005,779	-				-0.5
4,005,821	-				-2.0
4,005,834	+				-2.0
4,005,834	+				+2.3
4,005,834	+				+0.2
4,005,954	+				+0.1
4,005,962	+				-0.4
4,005,962	+				-0.3
4,005,963	-				-2.9
4,005,963	-				+0.8
4,005,963	-				+1.3
4,005,963	-				-0.5
4,005,963	-				+1.2
4,005,963	-				-0.5
4,005,997	-				-0.3
4,006,169	+				-0.2
4,006,170	-				+0.4
4,006,170	-				-0.5
4,006,195	+				-0.2
4,006,234	+				+0.8
4,006,235	-				+0.8
4,006,292	+				+0.3
4,006,293	-				+1.3
4,006,293	-				+1.1
4,006,334	+		DDA3937_RS21700	0.12	-0.8
4,006,337	+		DDA3937_RS21700	0.12	-1.5
4,006,338	-		DDA3937_RS21700	0.12	+0.7
4,006,338	-		DDA3937_RS21700	0.12	-0.5
4,006,387	+		DDA3937_RS21700	0.16	+0.6
4,006,388	-		DDA3937_RS21700	0.16	+0.8
4,006,404	+		DDA3937_RS21700	0.17	-0.5
4,006,404	+		DDA3937_RS21700	0.17	-1.6
4,006,404	+		DDA3937_RS21700	0.17	-1.6
4,006,405	-		DDA3937_RS21700	0.17	+1.9
4,006,406	+		DDA3937_RS21700	0.17	-2.2
4,006,421	+		DDA3937_RS21700	0.19	+0.3
4,006,422	-		DDA3937_RS21700	0.19	-2.7
4,006,442	+		DDA3937_RS21700	0.20	-1.0
4,006,442	+		DDA3937_RS21700	0.20	-1.7
4,006,442	+		DDA3937_RS21700	0.20	-2.5
4,006,443	-		DDA3937_RS21700	0.20	-0.8
4,006,443	-		DDA3937_RS21700	0.20	+0.3
4,006,443	-		DDA3937_RS21700	0.20	+0.8
4,006,443	-		DDA3937_RS21700	0.20	-0.4
4,006,526	+		DDA3937_RS21700	0.27	+0.8
4,006,526	+		DDA3937_RS21700	0.27	+0.2
4,006,526	+		DDA3937_RS21700	0.27	+0.9
4,006,527	-		DDA3937_RS21700	0.27	+0.1
4,006,528	+		DDA3937_RS21700	0.27	-0.4
4,006,528	+		DDA3937_RS21700	0.27	+0.9
4,006,528	+		DDA3937_RS21700	0.27	+0.3
4,006,529	-		DDA3937_RS21700	0.27	+0.0
4,006,569	-		DDA3937_RS21700	0.30	-0.3
4,006,569	-		DDA3937_RS21700	0.30	-0.2
4,006,569	-		DDA3937_RS21700	0.30	+0.9
4,006,571	-		DDA3937_RS21700	0.30	+1.0
4,006,571	-		DDA3937_RS21700	0.30	-0.4
4,006,617	+		DDA3937_RS21700	0.34	+1.9
4,006,618	-		DDA3937_RS21700	0.34	-0.7
4,006,623	+		DDA3937_RS21700	0.34	+0.2
4,006,623	+		DDA3937_RS21700	0.34	+1.8
4,006,624	-				+0.9
4,006,624	-		DDA3937_RS21700	0.34	+0.9
4,006,624	-		DDA3937_RS21700	0.34	+1.3
4,006,624	-		DDA3937_RS21700	0.34	-0.6
4,006,674	+		DDA3937_RS21700	0.38	-0.7
4,006,684	-		DDA3937_RS21700	0.39	+0.9
4,006,739	+		DDA3937_RS21700	0.43	-1.2
4,006,739	+		DDA3937_RS21700	0.43	+0.3
4,006,739	+		DDA3937_RS21700	0.43	-1.5
4,006,739	+		DDA3937_RS21700	0.43	-2.0
4,006,740	-		DDA3937_RS21700	0.43	-0.6
4,006,741	+		DDA3937_RS21700	0.43	+0.0
4,006,747	+		DDA3937_RS21700	0.44	-1.7
4,006,747	+		DDA3937_RS21700	0.44	+0.0
4,006,747	+		DDA3937_RS21700	0.44	+0.3
4,006,747	+		DDA3937_RS21700	0.44	+0.1
4,006,748	-		DDA3937_RS21700	0.44	-1.0
4,006,760	+		DDA3937_RS21700	0.45	+0.5
4,006,760	+		DDA3937_RS21700	0.45	-0.5
4,006,761	-		DDA3937_RS21700	0.45	+2.1
4,006,764	-		DDA3937_RS21700	0.45	-2.0
4,006,792	+		DDA3937_RS21700	0.47	-0.0
4,006,792	+		DDA3937_RS21700	0.47	+0.0
4,006,792	+		DDA3937_RS21700	0.47	-1.4
4,006,792	+		DDA3937_RS21700	0.47	-1.2
4,006,793	-		DDA3937_RS21700	0.48	+1.6
4,006,796	+		DDA3937_RS21700	0.48	-0.4
4,006,796	+		DDA3937_RS21700	0.48	-0.7
4,006,796	+		DDA3937_RS21700	0.48	-2.1
4,006,796	+		DDA3937_RS21700	0.48	-0.8
4,006,796	+		DDA3937_RS21700	0.48	-0.5
4,006,797	-		DDA3937_RS21700	0.48	-1.0
4,006,797	-		DDA3937_RS21700	0.48	-1.2
4,006,797	-		DDA3937_RS21700	0.48	-1.4
4,006,797	-		DDA3937_RS21700	0.48	+1.2
4,006,797	-		DDA3937_RS21700	0.48	-0.1
4,006,797	-		DDA3937_RS21700	0.48	-2.0
4,006,797	-		DDA3937_RS21700	0.48	+0.9
4,006,798	+		DDA3937_RS21700	0.48	-2.0
4,006,829	-		DDA3937_RS21700	0.50	-1.2
4,006,853	-		DDA3937_RS21700	0.52	-1.2
4,006,900	+		DDA3937_RS21700	0.56	-1.7
4,006,901	-		DDA3937_RS21700	0.56	-0.4
4,006,901	-		DDA3937_RS21700	0.56	+0.1
4,006,919	-		DDA3937_RS21700	0.57	+1.0
4,006,925	+		DDA3937_RS21700	0.58	-0.1
4,006,940	+		DDA3937_RS21700	0.59	+0.0
4,006,940	+		DDA3937_RS21700	0.59	-0.7
4,006,940	+		DDA3937_RS21700	0.59	-0.6
4,006,941	-		DDA3937_RS21700	0.59	+0.6
4,006,941	-		DDA3937_RS21700	0.59	+0.6
4,006,941	-		DDA3937_RS21700	0.59	+0.1
4,006,941	-		DDA3937_RS21700	0.59	+0.4
4,006,941	-		DDA3937_RS21700	0.59	+0.2
4,006,941	-		DDA3937_RS21700	0.59	+1.3
4,006,941	-		DDA3937_RS21700	0.59	-1.3
4,006,941	-		DDA3937_RS21700	0.59	-0.2
4,006,941	-		DDA3937_RS21700	0.59	+2.9
4,006,941	-		DDA3937_RS21700	0.59	+0.8
4,006,977	+		DDA3937_RS21700	0.62	-0.8
4,007,045	+		DDA3937_RS21700	0.67	-2.4
4,007,045	+		DDA3937_RS21700	0.67	-1.4
4,007,071	+		DDA3937_RS21700	0.69	-0.3
4,007,094	+		DDA3937_RS21700	0.71	+0.4
4,007,104	+		DDA3937_RS21700	0.72	+1.3
4,007,105	-		DDA3937_RS21700	0.72	+0.8
4,007,105	-		DDA3937_RS21700	0.72	-0.8
4,007,233	+		DDA3937_RS21700	0.82	-1.3
4,007,234	-		DDA3937_RS21700	0.82	-1.3
4,007,234	-		DDA3937_RS21700	0.82	+1.3
4,007,272	+		DDA3937_RS21700	0.85	+1.6
4,007,272	+		DDA3937_RS21700	0.85	-0.2
4,007,343	+				-1.5
4,007,344	-				-2.4
4,007,344	-				-0.7
4,007,344	-				+0.2
4,007,348	+				-0.3
4,007,348	+				-1.7
4,007,348	+				+0.2
4,007,348	+				+0.3
4,007,349	-				-0.5
4,007,349	-				+0.2
4,007,407	+				-0.7
4,007,437	-				-0.5
4,007,462	+				+2.3
4,007,463	-				-1.1
4,007,466	-				-0.1
4,007,539	+		DDA3937_RS17595	0.15	+1.2
4,007,539	+		DDA3937_RS17595	0.15	+0.2
4,007,539	+		DDA3937_RS17595	0.15	-2.8
4,007,539	+		DDA3937_RS17595	0.15	+0.3
4,007,540	-		DDA3937_RS17595	0.15	+0.3
4,007,540	-		DDA3937_RS17595	0.15	-2.2
4,007,650	+		DDA3937_RS17595	0.42	-0.2
4,007,650	+		DDA3937_RS17595	0.42	+1.0
4,007,650	+		DDA3937_RS17595	0.42	-0.0
4,007,650	+		DDA3937_RS17595	0.42	+1.0
4,007,650	+		DDA3937_RS17595	0.42	+2.3
4,007,650	+		DDA3937_RS17595	0.42	-2.2
4,007,651	-		DDA3937_RS17595	0.42	-1.0
4,007,651	-		DDA3937_RS17595	0.42	-0.5
4,007,651	-		DDA3937_RS17595	0.42	-2.1
4,007,651	-		DDA3937_RS17595	0.42	-1.0
4,007,651	-		DDA3937_RS17595	0.42	-0.7
4,007,651	-		DDA3937_RS17595	0.42	+1.3
4,007,654	+		DDA3937_RS17595	0.43	+0.7
4,007,655	-		DDA3937_RS17595	0.43	-1.2
4,007,655	-		DDA3937_RS17595	0.43	-0.5
4,007,665	+		DDA3937_RS17595	0.45	+0.8
4,007,665	+		DDA3937_RS17595	0.45	-0.5
4,007,666	-		DDA3937_RS17595	0.45	-0.4
4,007,666	-		DDA3937_RS17595	0.45	+0.9
4,007,693	+		DDA3937_RS17595	0.52	-0.1
4,007,771	+		DDA3937_RS17595	0.70	-0.6
4,007,771	+		DDA3937_RS17595	0.70	-0.4
4,007,771	+		DDA3937_RS17595	0.70	-1.7
4,007,772	-				+0.7
4,007,881	+				+0.1
4,007,881	+				+0.3
4,007,882	-				-1.1
4,007,937	+				-1.7
4,007,938	-				+0.3
4,007,938	-				-1.2
4,007,938	-				-2.0
4,007,993	-				-1.8
4,007,993	-				-0.4
4,007,993	-				-2.1
4,007,994	+				-1.0
4,008,004	+				-0.0
4,008,005	-				+0.1
4,008,005	-				-0.2
4,008,036	+				-1.1