Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14700

Experiment: M9+glucose+arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose+arginine
3,374,446	+		DDA3937_RS14695	0.53	+0.0
3,374,447	-		DDA3937_RS14695	0.53	+0.0
3,374,447	-		DDA3937_RS14695	0.53	+0.7
3,374,447	-				-1.5
3,374,456	+		DDA3937_RS14695	0.54	-0.6
3,374,456	+		DDA3937_RS14695	0.54	-1.3
3,374,580	-		DDA3937_RS14695	0.63	-1.0
3,374,580	-		DDA3937_RS14695	0.63	-0.8
3,374,746	+		DDA3937_RS14695	0.76	-0.3
3,374,746	+		DDA3937_RS14695	0.76	-0.3
3,374,747	-		DDA3937_RS14695	0.76	-3.0
3,374,866	+		DDA3937_RS14695	0.85	-1.1
3,374,866	+		DDA3937_RS14695	0.85	+0.0
3,374,866	+		DDA3937_RS14695	0.85	-1.3
3,374,866	+		DDA3937_RS14695	0.85	-0.1
3,374,867	-		DDA3937_RS14695	0.85	-1.1
3,374,867	-		DDA3937_RS14695	0.85	-0.8
3,374,867	-		DDA3937_RS14695	0.85	-0.5
3,375,698	-		DDA3937_RS14700	0.15	-1.8
3,375,698	-		DDA3937_RS14700	0.15	-0.5
3,375,698	-		DDA3937_RS14700	0.15	-1.3
3,375,698	-		DDA3937_RS14700	0.15	-0.0
3,375,721	+		DDA3937_RS14700	0.16	-1.0
3,375,722	-		DDA3937_RS14700	0.16	-0.2
3,375,722	-		DDA3937_RS14700	0.16	-1.0
3,375,772	+		DDA3937_RS14700	0.18	-0.5
3,375,773	-		DDA3937_RS14700	0.18	+0.0
3,375,803	-		DDA3937_RS14700	0.19	-0.4
3,375,809	+		DDA3937_RS14700	0.20	+0.0
3,375,825	+		DDA3937_RS14700	0.20	-0.4
3,375,825	+		DDA3937_RS14700	0.20	+0.5
3,375,825	+		DDA3937_RS14700	0.20	-0.1
3,375,825	+		DDA3937_RS14700	0.20	+0.3
3,375,825	+				-0.8
3,375,826	-		DDA3937_RS14700	0.20	+0.0
3,375,826	-		DDA3937_RS14700	0.20	-0.4
3,375,826	-		DDA3937_RS14700	0.20	-0.1
3,375,826	-		DDA3937_RS14700	0.20	-1.2
3,375,826	-		DDA3937_RS14700	0.20	-0.2
3,375,826	-		DDA3937_RS14700	0.20	-1.8
3,375,826	-		DDA3937_RS14700	0.20	-1.6
3,375,828	+		DDA3937_RS14700	0.20	-2.2
3,375,828	+		DDA3937_RS14700	0.20	-1.1
3,375,828	+		DDA3937_RS14700	0.20	-1.8
3,375,829	-		DDA3937_RS14700	0.21	-0.2
3,375,829	-		DDA3937_RS14700	0.21	+1.0
3,375,829	-		DDA3937_RS14700	0.21	-0.1
3,375,829	-		DDA3937_RS14700	0.21	+0.0
3,375,829	-		DDA3937_RS14700	0.21	-0.8
3,375,851	+		DDA3937_RS14700	0.22	-1.7
3,375,890	+		DDA3937_RS14700	0.23	-1.5
3,375,895	+		DDA3937_RS14700	0.24	+0.3
3,375,896	-		DDA3937_RS14700	0.24	+0.7
3,375,896	-		DDA3937_RS14700	0.24	-0.5
3,375,896	-				-1.0
3,376,077	+		DDA3937_RS14700	0.32	-0.5
3,376,078	-		DDA3937_RS14700	0.32	-1.5
3,376,113	+		DDA3937_RS14700	0.33	+0.4
3,376,114	-		DDA3937_RS14700	0.33	+0.0
3,376,164	+		DDA3937_RS14700	0.36	-0.7
3,376,164	+		DDA3937_RS14700	0.36	-1.9
3,376,165	-		DDA3937_RS14700	0.36	-1.5
3,376,180	+		DDA3937_RS14700	0.36	-2.7
3,376,255	+		DDA3937_RS14700	0.40	+1.3
3,376,255	+		DDA3937_RS14700	0.40	-0.0
3,376,255	+		DDA3937_RS14700	0.40	-0.8
3,376,255	+		DDA3937_RS14700	0.40	-0.2
3,376,255	+		DDA3937_RS14700	0.40	-3.7
3,376,255	+		DDA3937_RS14700	0.40	-1.0
3,376,256	-		DDA3937_RS14700	0.40	+0.0
3,376,256	-		DDA3937_RS14700	0.40	-2.7
3,376,256	-		DDA3937_RS14700	0.40	-1.2
3,376,256	-		DDA3937_RS14700	0.40	-1.0
3,376,256	-		DDA3937_RS14700	0.40	+2.8
3,376,256	-		DDA3937_RS14700	0.40	-0.3
3,376,256	-		DDA3937_RS14700	0.40	+0.0
3,376,258	-		DDA3937_RS14700	0.40	-0.0
3,376,258	-		DDA3937_RS14700	0.40	-0.5
3,376,258	-		DDA3937_RS14700	0.40	-1.8
3,376,264	+		DDA3937_RS14700	0.40	+1.8
3,376,264	+		DDA3937_RS14700	0.40	-0.4
3,376,265	-		DDA3937_RS14700	0.40	-0.5
3,376,291	+		DDA3937_RS14700	0.41	+0.8
3,376,292	-		DDA3937_RS14700	0.41	+2.6
3,376,292	-				-0.5
3,376,292	-		DDA3937_RS14700	0.41	-0.5
3,376,292	-		DDA3937_RS14700	0.41	-1.3
3,376,293	+		DDA3937_RS14700	0.42	-0.5
3,376,293	+		DDA3937_RS14700	0.42	-0.5
3,376,293	+		DDA3937_RS14700	0.42	-0.3
3,376,327	+		DDA3937_RS14700	0.43	+0.2
3,376,327	+		DDA3937_RS14700	0.43	-1.1
3,376,328	-		DDA3937_RS14700	0.43	-0.4
3,376,328	-		DDA3937_RS14700	0.43	-0.9
3,376,391	+		DDA3937_RS14700	0.46	+0.0
3,376,391	+		DDA3937_RS14700	0.46	-0.8
3,376,391	+		DDA3937_RS14700	0.46	-0.4
3,376,392	-		DDA3937_RS14700	0.46	-2.1
3,376,392	-		DDA3937_RS14700	0.46	-1.3
3,376,408	+		DDA3937_RS14700	0.47	-1.1
3,376,408	+		DDA3937_RS14700	0.47	+0.3
3,376,409	-		DDA3937_RS14700	0.47	+1.0
3,376,417	+		DDA3937_RS14700	0.47	-0.4
3,376,417	+		DDA3937_RS14700	0.47	-1.5
3,376,417	+		DDA3937_RS14700	0.47	-0.5
3,376,417	+		DDA3937_RS14700	0.47	-1.2
3,376,417	+		DDA3937_RS14700	0.47	-2.1
3,376,457	+		DDA3937_RS14700	0.49	-0.5
3,376,458	-		DDA3937_RS14700	0.49	+0.0
3,376,625	-		DDA3937_RS14700	0.57	-0.5
3,376,632	+		DDA3937_RS14700	0.57	-2.2
3,376,651	+		DDA3937_RS14700	0.58	-3.8
3,376,651	+		DDA3937_RS14700	0.58	-0.9
3,376,651	+		DDA3937_RS14700	0.58	-0.4
3,376,651	+		DDA3937_RS14700	0.58	-1.4
3,376,652	-		DDA3937_RS14700	0.58	+0.6
3,376,652	-		DDA3937_RS14700	0.58	-2.8
3,376,674	+		DDA3937_RS14700	0.59	+1.0
3,376,674	+		DDA3937_RS14700	0.59	+1.2
3,376,674	+		DDA3937_RS14700	0.59	-1.1
3,376,674	+		DDA3937_RS14700	0.59	-0.7
3,376,674	+		DDA3937_RS14700	0.59	+0.2
3,376,674	+		DDA3937_RS14700	0.59	-1.4
3,376,675	-		DDA3937_RS14700	0.59	-0.2
3,376,675	-		DDA3937_RS14700	0.59	-0.3
3,376,680	-		DDA3937_RS14700	0.59	-1.1
3,376,708	-		DDA3937_RS14700	0.60	-1.1
3,376,708	-		DDA3937_RS14700	0.60	-0.1
3,376,727	+		DDA3937_RS14700	0.61	+1.0
3,376,729	+		DDA3937_RS14700	0.61	-1.3
3,376,729	+		DDA3937_RS14700	0.61	-0.7
3,376,729	+		DDA3937_RS14700	0.61	-0.9
3,376,729	+		DDA3937_RS14700	0.61	-0.4
3,376,730	-		DDA3937_RS14700	0.61	-2.3
3,376,730	-		DDA3937_RS14700	0.61	-2.7
3,376,730	-		DDA3937_RS14700	0.61	-0.5
3,376,730	-		DDA3937_RS14700	0.61	-0.2
3,376,730	-		DDA3937_RS14700	0.61	-2.0
3,376,730	-		DDA3937_RS14700	0.61	-2.9
3,376,813	+		DDA3937_RS14700	0.65	-1.5
3,376,825	-		DDA3937_RS14700	0.66	-0.9
3,376,877	-		DDA3937_RS14700	0.68	-0.4
3,376,903	+		DDA3937_RS14700	0.69	-0.6
3,376,903	+		DDA3937_RS14700	0.69	-1.8
3,376,904	-		DDA3937_RS14700	0.69	-0.5
3,376,904	-		DDA3937_RS14700	0.69	+1.5
3,376,904	-		DDA3937_RS14700	0.69	-1.0
3,376,912	+		DDA3937_RS14700	0.70	-1.5
3,376,912	+		DDA3937_RS14700	0.70	-0.8
3,376,912	+		DDA3937_RS14700	0.70	+0.4
3,376,912	+		DDA3937_RS14700	0.70	+0.2
3,376,912	+		DDA3937_RS14700	0.70	-2.2
3,376,912	+		DDA3937_RS14700	0.70	-1.5
3,376,912	+		DDA3937_RS14700	0.70	-3.1
3,376,912	+		DDA3937_RS14700	0.70	+0.3
3,376,913	-		DDA3937_RS14700	0.70	-0.3
3,376,913	-		DDA3937_RS14700	0.70	-0.4
3,376,913	-		DDA3937_RS14700	0.70	-1.8
3,376,913	-				-1.3
3,376,913	-		DDA3937_RS14700	0.70	-0.0
3,376,913	-		DDA3937_RS14700	0.70	-0.5
3,376,913	-		DDA3937_RS14700	0.70	-0.7
3,376,913	-		DDA3937_RS14700	0.70	-1.7
3,376,913	-		DDA3937_RS14700	0.70	-0.9
3,376,913	-		DDA3937_RS14700	0.70	+0.2
3,376,914	+		DDA3937_RS14700	0.70	+1.2
3,376,914	+		DDA3937_RS14700	0.70	+0.7
3,376,914	+		DDA3937_RS14700	0.70	+0.5
3,376,914	+		DDA3937_RS14700	0.70	-0.1
3,376,915	-		DDA3937_RS14700	0.70	+0.5
3,376,915	-		DDA3937_RS14700	0.70	-0.2
3,376,915	-		DDA3937_RS14700	0.70	-1.8
3,376,915	-		DDA3937_RS14700	0.70	+0.5
3,376,915	-		DDA3937_RS14700	0.70	-0.3
3,376,957	-		DDA3937_RS14700	0.72	-0.5
3,376,969	-		DDA3937_RS14700	0.72	+0.7
3,376,997	+				+0.2
3,376,997	+		DDA3937_RS14700	0.73	-0.5
3,376,997	+		DDA3937_RS14700	0.73	-1.1
3,376,997	+		DDA3937_RS14700	0.73	+0.5
3,376,998	-		DDA3937_RS14700	0.73	-1.5
3,377,025	+		DDA3937_RS14700	0.75	-2.4
3,377,025	+				+0.5
3,377,025	+		DDA3937_RS14700	0.75	+0.2
3,377,026	-		DDA3937_RS14700	0.75	-1.8
3,377,026	-		DDA3937_RS14700	0.75	-2.4
3,377,026	-		DDA3937_RS14700	0.75	-1.8
3,377,026	-		DDA3937_RS14700	0.75	+0.6
3,377,028	+		DDA3937_RS14700	0.75	-1.3
3,377,029	-		DDA3937_RS14700	0.75	-1.0
3,377,056	-		DDA3937_RS14700	0.76	-0.3
3,377,080	+		DDA3937_RS14700	0.77	-1.8
3,377,081	-		DDA3937_RS14700	0.77	-0.8
3,377,081	-		DDA3937_RS14700	0.77	+0.2
3,377,099	-		DDA3937_RS14700	0.78	-2.1
3,377,099	-		DDA3937_RS14700	0.78	+0.3
3,377,099	-		DDA3937_RS14700	0.78	-0.3
3,377,099	-		DDA3937_RS14700	0.78	+1.6
3,377,099	-				-0.8
3,377,099	-		DDA3937_RS14700	0.78	+1.0
3,377,099	-		DDA3937_RS14700	0.78	-1.2
3,377,099	-		DDA3937_RS14700	0.78	+0.0
3,377,099	-		DDA3937_RS14700	0.78	-3.7
3,377,188	+		DDA3937_RS14700	0.82	+0.0
3,377,188	+		DDA3937_RS14700	0.82	+0.2
3,377,188	+		DDA3937_RS14700	0.82	-1.5
3,377,189	-		DDA3937_RS14700	0.82	-0.8
3,377,194	+		DDA3937_RS14700	0.82	+1.4
3,377,194	+		DDA3937_RS14700	0.82	-0.3
3,377,221	+		DDA3937_RS14700	0.84	+1.0
3,377,222	-		DDA3937_RS14700	0.84	+1.0
3,377,222	-		DDA3937_RS14700	0.84	-2.5
3,377,222	-		DDA3937_RS14700	0.84	-2.9
3,377,256	+		DDA3937_RS14700	0.85	-1.8
3,377,256	+		DDA3937_RS14700	0.85	+2.0
3,377,256	+		DDA3937_RS14700	0.85	-0.4
3,377,257	-		DDA3937_RS14700	0.85	-0.3
3,377,257	-		DDA3937_RS14700	0.85	+0.3
3,377,290	+		DDA3937_RS14700	0.87	+0.6
3,377,290	+		DDA3937_RS14700	0.87	-0.8
3,377,291	-		DDA3937_RS14700	0.87	-3.0
3,377,291	-		DDA3937_RS14700	0.87	+0.3
3,377,291	-		DDA3937_RS14700	0.87	-0.8
3,377,291	-		DDA3937_RS14700	0.87	+1.4
3,377,339	+		DDA3937_RS14700	0.89	-3.0
3,377,339	+		DDA3937_RS14700	0.89	+0.7
3,377,339	+		DDA3937_RS14700	0.89	+0.0
3,377,339	+		DDA3937_RS14700	0.89	-1.0
3,377,340	-		DDA3937_RS14700	0.89	-1.2
3,377,344	+		DDA3937_RS14700	0.89	-2.7
3,377,344	+		DDA3937_RS14700	0.89	-0.5
3,377,344	+		DDA3937_RS14700	0.89	-0.8
3,377,345	-		DDA3937_RS14700	0.89	-1.5
3,377,345	-		DDA3937_RS14700	0.89	-1.8
3,377,345	-		DDA3937_RS14700	0.89	-0.9
3,377,345	-		DDA3937_RS14700	0.89	+1.2
3,377,345	-		DDA3937_RS14700	0.89	-2.3
3,377,346	+		DDA3937_RS14700	0.89	-2.3
3,377,346	+		DDA3937_RS14700	0.89	-2.3
3,377,347	-		DDA3937_RS14700	0.89	-2.0
3,377,359	+		DDA3937_RS14700	0.90	-1.1
3,377,359	+				-2.5
3,377,359	+		DDA3937_RS14700	0.90	-0.5
3,377,360	-		DDA3937_RS14700	0.90	+1.2
3,377,396	-				-1.0
3,377,396	-				-0.3
3,377,396	-				-1.0
3,377,396	-				-0.5
3,377,397	+				-0.2
3,377,397	+				-0.6
3,377,397	+				+0.4
3,377,397	+				-2.3
3,377,397	+				-0.4
3,377,398	-				-1.9
3,377,398	-				-0.8
3,377,398	-				-0.1
3,377,500	+				-0.2
3,377,500	+				+0.5
3,377,500	+				-0.4
3,377,500	+				-1.5
3,377,500	+				-1.5
3,377,501	-				+1.6
3,377,501	-				+0.4
3,377,501	-				-0.8
3,377,501	-				-1.3
3,377,501	-				+0.2
3,377,536	+				-0.5
3,377,536	+				-0.0
3,377,581	+				+0.7
3,377,582	-				+0.5
3,377,653	+				+0.2
3,377,653	+				-0.5
3,377,654	-				-0.5
3,377,654	-				+0.0
3,377,654	-				-0.1
3,377,659	+				-1.6
3,377,659	+				-0.6
3,377,659	+				-0.0
3,377,660	-				-1.0
3,377,677	+				+0.5
3,377,772	+				+0.0
3,377,772	+				+1.0
3,377,773	-				-0.1
3,378,025	+		DDA3937_RS14705	0.30	-1.4
3,378,192	+		DDA3937_RS14705	0.44	-0.2
3,378,192	+		DDA3937_RS14705	0.44	-0.9
3,378,193	-		DDA3937_RS14705	0.44	-2.5
3,378,193	-		DDA3937_RS14705	0.44	-0.3
3,378,193	-		DDA3937_RS14705	0.44	+0.5
3,378,193	-		DDA3937_RS14705	0.44	-1.3
3,378,257	+		DDA3937_RS14705	0.50	+1.2
3,378,258	-		DDA3937_RS14705	0.50	-1.1
3,378,258	-		DDA3937_RS14705	0.50	-0.3
3,378,258	-		DDA3937_RS14705	0.50	-1.5
3,378,537	-		DDA3937_RS14705	0.73	+0.1