Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09625

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
2,169,652	-				-0.6
2,169,768	-				+2.3
2,169,768	-				+0.7
2,169,768	-				-0.3
2,169,808	-				-0.3
2,169,837	+				+0.2
2,169,853	-				-0.1
2,169,853	-				-1.7
2,169,853	-				-1.1
2,170,061	+		DDA3937_RS09620	0.33	-0.9
2,170,172	+		DDA3937_RS09620	0.51	+0.0
2,170,173	-		DDA3937_RS09620	0.51	-2.1
2,170,253	+		DDA3937_RS09620	0.65	-0.8
2,170,265	-		DDA3937_RS09620	0.67	+1.1
2,170,377	-		DDA3937_RS09620	0.85	+0.3
2,170,377	-		DDA3937_RS09620	0.85	+1.2
2,170,384	+		DDA3937_RS09620	0.86	-1.1
2,170,384	+		DDA3937_RS09620	0.86	-0.6
2,170,385	-		DDA3937_RS09620	0.86	-2.5
2,170,420	+				+0.1
2,170,421	-				+2.3
2,170,421	-				-0.6
2,170,421	-				-0.7
2,170,538	+				+0.7
2,170,538	+				+0.4
2,170,538	+				-0.7
2,170,539	-				-0.1
2,170,569	+				-1.1
2,170,586	+				+1.7
2,170,647	+				-1.2
2,170,647	+				-0.7
2,170,648	-				-0.3
2,170,671	-				+0.3
2,170,677	+				-0.7
2,170,677	+				-1.3
2,170,677	+				+0.3
2,170,677	+				+0.7
2,170,678	-				-0.2
2,170,717	+		DDA3937_RS09625	0.11	-1.1
2,170,787	-		DDA3937_RS09625	0.22	-1.6
2,170,787	-				-1.3
2,170,787	-		DDA3937_RS09625	0.22	+0.7
2,170,811	-		DDA3937_RS09625	0.26	-0.5
2,170,844	-		DDA3937_RS09625	0.31	-0.2
2,170,935	+		DDA3937_RS09625	0.45	-0.6
2,170,935	+		DDA3937_RS09625	0.45	-0.7
2,170,936	-				+0.7
2,170,936	-		DDA3937_RS09625	0.45	-0.3
2,170,936	-		DDA3937_RS09625	0.45	-0.7
2,170,936	-		DDA3937_RS09625	0.45	-1.1
2,170,936	-		DDA3937_RS09625	0.45	-0.6
2,171,124	+		DDA3937_RS09625	0.74	+0.2
2,171,124	+				+0.1
2,171,124	+		DDA3937_RS09625	0.74	-0.4
2,171,124	+		DDA3937_RS09625	0.74	-1.1
2,171,125	-		DDA3937_RS09625	0.74	-0.3
2,171,125	-		DDA3937_RS09625	0.74	-0.8
2,171,245	-				-0.7
2,171,274	+				+0.3
2,171,274	+				-1.5
2,171,274	+				+0.1
2,171,274	+				-1.4
2,171,274	+				-0.3
2,171,274	+				+0.1
2,171,275	-				-0.5
2,171,275	-				-0.9
2,171,275	-				-2.1
2,171,275	-				-0.6
2,171,275	-				-0.8
2,171,275	-				+0.3
2,171,275	-				-0.3
2,171,279	+				-0.2
2,171,279	+				-1.1
2,171,279	+				+0.4
2,171,279	+				-0.3
2,171,280	-				+0.9
2,171,280	-				+0.7
2,171,280	-				+1.3
2,171,280	-				-0.6
2,171,280	-				-1.2
2,171,280	-				+0.4
2,171,294	+				+0.3
2,171,295	-				-1.3
2,171,295	-				-0.9
2,171,303	+				+0.2
2,171,303	+				+0.2
2,171,303	+				-0.3
2,171,304	-				-2.1
2,171,304	-				-0.9
2,171,426	-				-0.1
2,171,429	+				-0.8
2,171,429	+				-0.7
2,171,429	+				-0.9
2,171,430	-				-1.4
2,171,430	-				-1.9
2,171,436	+				-0.7
2,171,436	+				-0.3
2,171,437	-				+0.8
2,171,451	-				+0.1
2,171,466	-				-2.0
2,171,682	+		DDA3937_RS09630	0.12	-1.6
2,171,682	+		DDA3937_RS09630	0.12	-2.9
2,171,685	+		DDA3937_RS09630	0.12	-2.3
2,171,685	+		DDA3937_RS09630	0.12	-0.3
2,171,685	+		DDA3937_RS09630	0.12	-0.1
2,171,685	+		DDA3937_RS09630	0.12	-0.2
2,171,685	+		DDA3937_RS09630	0.12	+0.3
2,171,686	-				-0.3
2,171,726	+		DDA3937_RS09630	0.17	-0.2
2,171,726	+		DDA3937_RS09630	0.17	+0.7
2,171,726	+		DDA3937_RS09630	0.17	-0.6
2,171,727	-		DDA3937_RS09630	0.17	+1.2
2,171,778	+		DDA3937_RS09630	0.23	+0.2
2,171,803	+		DDA3937_RS09630	0.26	-1.0
2,171,804	-		DDA3937_RS09630	0.26	+0.2
2,171,804	-		DDA3937_RS09630	0.26	-1.4
2,171,809	-		DDA3937_RS09630	0.26	-0.5
2,171,817	+		DDA3937_RS09630	0.27	-0.3
2,171,817	+		DDA3937_RS09630	0.27	-0.3
2,171,818	-		DDA3937_RS09630	0.27	+0.5
2,171,823	+		DDA3937_RS09630	0.28	-1.7
2,171,823	+		DDA3937_RS09630	0.28	-1.1
2,171,890	+		DDA3937_RS09630	0.36	-0.3
2,171,890	+		DDA3937_RS09630	0.36	-1.7
2,171,890	+		DDA3937_RS09630	0.36	-0.2
2,171,890	+		DDA3937_RS09630	0.36	+0.7
2,171,890	+		DDA3937_RS09630	0.36	+0.2
2,171,890	+		DDA3937_RS09630	0.36	-0.3
2,171,891	-				+0.7
2,171,891	-		DDA3937_RS09630	0.36	+0.7
2,171,891	-		DDA3937_RS09630	0.36	+0.1
2,171,891	-		DDA3937_RS09630	0.36	-1.2
2,171,891	-		DDA3937_RS09630	0.36	-0.3
2,171,891	-		DDA3937_RS09630	0.36	-0.9
2,171,899	-		DDA3937_RS09630	0.37	-1.1
2,171,899	-		DDA3937_RS09630	0.37	-0.7
2,171,910	+		DDA3937_RS09630	0.38	+0.0
2,171,910	+		DDA3937_RS09630	0.38	-1.7
2,171,910	+		DDA3937_RS09630	0.38	-1.1
2,171,910	+		DDA3937_RS09630	0.38	-0.3
2,171,910	+		DDA3937_RS09630	0.38	-0.1
2,171,911	-		DDA3937_RS09630	0.38	+1.5
2,171,911	-		DDA3937_RS09630	0.38	-0.3
2,172,089	+		DDA3937_RS09630	0.58	-0.2
2,172,089	+		DDA3937_RS09630	0.58	+0.5
2,172,089	+		DDA3937_RS09630	0.58	-0.6
2,172,090	-		DDA3937_RS09630	0.58	-0.4
2,172,090	-		DDA3937_RS09630	0.58	-1.0
2,172,090	-		DDA3937_RS09630	0.58	-0.1
2,172,221	+		DDA3937_RS09630	0.73	-0.7
2,172,221	+		DDA3937_RS09630	0.73	-0.2
2,172,221	+		DDA3937_RS09630	0.73	-0.2
2,172,221	+		DDA3937_RS09630	0.73	+0.3
2,172,221	+				+0.2
2,172,221	+		DDA3937_RS09630	0.73	-2.1
2,172,221	+		DDA3937_RS09630	0.73	-0.5
2,172,221	+		DDA3937_RS09630	0.73	-0.1
2,172,221	+				+0.4
2,172,221	+		DDA3937_RS09630	0.73	+0.0
2,172,221	+		DDA3937_RS09630	0.73	-0.9
2,172,221	+		DDA3937_RS09630	0.73	-0.0
2,172,221	+		DDA3937_RS09630	0.73	+0.4
2,172,221	+		DDA3937_RS09630	0.73	+0.4
2,172,222	-		DDA3937_RS09630	0.74	+0.1
2,172,222	-		DDA3937_RS09630	0.74	-0.8
2,172,222	-		DDA3937_RS09630	0.74	+2.1
2,172,222	-		DDA3937_RS09630	0.74	+1.3
2,172,222	-		DDA3937_RS09630	0.74	+0.3
2,172,222	-		DDA3937_RS09630	0.74	-0.1
2,172,222	-		DDA3937_RS09630	0.74	+0.7
2,172,222	-		DDA3937_RS09630	0.74	+0.7
2,172,222	-		DDA3937_RS09630	0.74	-0.7
2,172,222	-		DDA3937_RS09630	0.74	-0.4