Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05575

Experiment: M9+polygalacturonate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS05565 and DDA3937_RS05570 are separated by 102 nucleotidesDDA3937_RS05570 and DDA3937_RS05575 are separated by 35 nucleotidesDDA3937_RS05575 and DDA3937_RS05580 are separated by 359 nucleotidesDDA3937_RS05580 and DDA3937_RS23060 overlap by 17 nucleotides DDA3937_RS05565: DDA3937_RS05565 - aldo/keto reductase, at 1,242,834 to 1,244,036 _RS05565 DDA3937_RS05570: DDA3937_RS05570 - nuclear transport factor 2 family protein, at 1,244,139 to 1,244,642 _RS05570 DDA3937_RS05575: DDA3937_RS05575 - MFS transporter, at 1,244,678 to 1,246,042 _RS05575 DDA3937_RS05580: DDA3937_RS05580 - MBL fold metallo-hydrolase, at 1,246,402 to 1,246,878 _RS05580 DDA3937_RS23060: DDA3937_RS23060 - hypothetical protein, at 1,246,862 to 1,247,053 _RS23060 Position (kb) 1244 1245 1246 1247Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1243.679 kb on + strand, within DDA3937_RS05565at 1243.696 kb on + strand, within DDA3937_RS05565at 1243.850 kb on + strand, within DDA3937_RS05565at 1243.851 kb on - strand, within DDA3937_RS05565at 1243.952 kb on + strandat 1243.952 kb on + strandat 1243.952 kb on + strandat 1243.953 kb on - strandat 1243.953 kb on - strandat 1243.953 kb on - strandat 1244.132 kb on + strandat 1244.133 kb on - strandat 1244.133 kb on - strandat 1244.207 kb on + strand, within DDA3937_RS05570at 1244.266 kb on + strand, within DDA3937_RS05570at 1244.267 kb on - strand, within DDA3937_RS05570at 1244.267 kb on - strand, within DDA3937_RS05570at 1244.304 kb on + strand, within DDA3937_RS05570at 1244.345 kb on + strand, within DDA3937_RS05570at 1244.345 kb on + strand, within DDA3937_RS05570at 1244.345 kb on + strand, within DDA3937_RS05570at 1244.346 kb on - strand, within DDA3937_RS05570at 1244.346 kb on - strand, within DDA3937_RS05570at 1244.346 kb on - strand, within DDA3937_RS05570at 1244.346 kb on - strand, within DDA3937_RS05570at 1244.346 kb on - strand, within DDA3937_RS05570at 1244.349 kb on + strand, within DDA3937_RS05570at 1244.350 kb on - strand, within DDA3937_RS05570at 1244.350 kb on - strand, within DDA3937_RS05570at 1244.350 kb on - strand, within DDA3937_RS05570at 1244.549 kb on + strand, within DDA3937_RS05570at 1244.550 kb on - strand, within DDA3937_RS05570at 1244.596 kb on + strandat 1244.597 kb on - strandat 1244.597 kb on - strandat 1244.597 kb on - strandat 1244.597 kb on - strandat 1244.624 kb on + strandat 1244.624 kb on + strandat 1244.679 kb on + strandat 1244.680 kb on - strandat 1244.739 kb on + strandat 1244.740 kb on - strandat 1244.740 kb on - strandat 1244.800 kb on + strandat 1244.843 kb on - strand, within DDA3937_RS05575at 1245.234 kb on + strand, within DDA3937_RS05575at 1245.878 kb on - strand, within DDA3937_RS05575at 1246.047 kb on - strandat 1246.047 kb on - strandat 1246.047 kb on - strandat 1246.069 kb on + strandat 1246.069 kb on + strandat 1246.074 kb on + strandat 1246.095 kb on + strandat 1246.095 kb on + strandat 1246.096 kb on - strandat 1246.116 kb on + strandat 1246.117 kb on - strandat 1246.170 kb on - strandat 1246.178 kb on + strandat 1246.187 kb on + strandat 1246.187 kb on + strandat 1246.187 kb on + strandat 1246.187 kb on + strandat 1246.187 kb on + strandat 1246.188 kb on - strandat 1246.188 kb on - strandat 1246.188 kb on - strandat 1246.188 kb on - strandat 1246.211 kb on + strandat 1246.223 kb on + strandat 1246.249 kb on - strandat 1246.249 kb on - strandat 1246.312 kb on + strandat 1246.313 kb on - strandat 1246.313 kb on - strandat 1246.313 kb on - strandat 1246.336 kb on + strandat 1246.337 kb on - strandat 1246.337 kb on - strandat 1246.393 kb on + strandat 1246.394 kb on - strandat 1246.403 kb on + strandat 1246.403 kb on + strandat 1246.497 kb on + strand, within DDA3937_RS05580at 1246.498 kb on - strand, within DDA3937_RS05580at 1246.501 kb on + strand, within DDA3937_RS05580at 1246.501 kb on + strand, within DDA3937_RS05580at 1246.501 kb on + strand, within DDA3937_RS05580at 1246.502 kb on - strand, within DDA3937_RS05580at 1246.541 kb on - strand, within DDA3937_RS05580at 1246.543 kb on + strand, within DDA3937_RS05580at 1246.543 kb on + strand, within DDA3937_RS05580at 1246.543 kb on + strand, within DDA3937_RS05580at 1246.543 kb on + strand, within DDA3937_RS05580at 1246.543 kb on + strand, within DDA3937_RS05580at 1246.548 kb on + strand, within DDA3937_RS05580at 1246.549 kb on - strand, within DDA3937_RS05580at 1246.549 kb on - strand, within DDA3937_RS05580at 1246.549 kb on - strand, within DDA3937_RS05580at 1246.549 kb on - strand, within DDA3937_RS05580at 1246.549 kb on - strand, within DDA3937_RS05580at 1246.549 kb on - strand, within DDA3937_RS05580at 1246.549 kb on - strandat 1246.586 kb on + strand, within DDA3937_RS05580at 1246.586 kb on + strand, within DDA3937_RS05580at 1246.623 kb on + strand, within DDA3937_RS05580at 1246.623 kb on + strand, within DDA3937_RS05580at 1246.624 kb on - strand, within DDA3937_RS05580at 1246.624 kb on - strand, within DDA3937_RS05580at 1246.625 kb on + strand, within DDA3937_RS05580at 1246.625 kb on + strand, within DDA3937_RS05580at 1246.626 kb on - strand, within DDA3937_RS05580at 1246.626 kb on - strand, within DDA3937_RS05580at 1246.626 kb on - strand, within DDA3937_RS05580at 1246.626 kb on - strand, within DDA3937_RS05580at 1246.626 kb on - strand, within DDA3937_RS05580at 1246.649 kb on + strand, within DDA3937_RS05580at 1246.649 kb on + strand, within DDA3937_RS05580at 1246.649 kb on + strand, within DDA3937_RS05580at 1246.649 kb on + strand, within DDA3937_RS05580at 1246.649 kb on + strand, within DDA3937_RS05580at 1246.649 kb on + strand, within DDA3937_RS05580at 1246.649 kb on + strand, within DDA3937_RS05580at 1246.649 kb on + strandat 1246.649 kb on + strand, within DDA3937_RS05580at 1246.649 kb on + strand, within DDA3937_RS05580at 1246.650 kb on - strand, within DDA3937_RS05580at 1246.650 kb on - strand, within DDA3937_RS05580at 1246.650 kb on - strand, within DDA3937_RS05580at 1246.650 kb on - strand, within DDA3937_RS05580at 1246.659 kb on + strand, within DDA3937_RS05580at 1246.714 kb on + strand, within DDA3937_RS05580at 1246.714 kb on + strand, within DDA3937_RS05580at 1246.714 kb on + strand, within DDA3937_RS05580at 1246.715 kb on - strand, within DDA3937_RS05580at 1246.715 kb on - strand, within DDA3937_RS05580at 1246.715 kb on - strand, within DDA3937_RS05580at 1246.715 kb on - strand, within DDA3937_RS05580at 1246.715 kb on - strand, within DDA3937_RS05580at 1246.717 kb on + strand, within DDA3937_RS05580at 1246.717 kb on + strand, within DDA3937_RS05580at 1246.717 kb on + strand, within DDA3937_RS05580at 1246.718 kb on - strand, within DDA3937_RS05580at 1246.718 kb on - strand, within DDA3937_RS05580at 1246.718 kb on - strandat 1246.761 kb on - strand, within DDA3937_RS05580at 1246.775 kb on - strand, within DDA3937_RS05580at 1246.886 kb on + strand, within DDA3937_RS23060at 1246.886 kb on + strand, within DDA3937_RS23060at 1246.886 kb on + strand, within DDA3937_RS23060at 1246.887 kb on - strand, within DDA3937_RS23060at 1246.887 kb on - strand, within DDA3937_RS23060at 1246.920 kb on - strand, within DDA3937_RS23060at 1246.945 kb on - strand, within DDA3937_RS23060at 1246.945 kb on - strand, within DDA3937_RS23060at 1246.970 kb on + strand, within DDA3937_RS23060at 1246.970 kb on + strand, within DDA3937_RS23060at 1246.970 kb on + strand, within DDA3937_RS23060at 1246.980 kb on + strand, within DDA3937_RS23060at 1246.980 kb on + strand, within DDA3937_RS23060at 1246.994 kb on + strand, within DDA3937_RS23060at 1247.016 kb on - strand, within DDA3937_RS23060at 1247.016 kb on - strand, within DDA3937_RS23060at 1247.016 kb on - strand, within DDA3937_RS23060at 1247.041 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+polygalacturonate
remove
1,243,679 + DDA3937_RS05565 0.70 +0.8
1,243,696 + DDA3937_RS05565 0.72 +0.4
1,243,850 + DDA3937_RS05565 0.84 -1.0
1,243,851 - DDA3937_RS05565 0.85 -0.1
1,243,952 + -0.2
1,243,952 + -0.7
1,243,952 + -0.1
1,243,953 - +0.8
1,243,953 - +0.1
1,243,953 - +0.9
1,244,132 + -0.4
1,244,133 - -0.4
1,244,133 - -0.7
1,244,207 + DDA3937_RS05570 0.13 -0.2
1,244,266 + DDA3937_RS05570 0.25 -0.5
1,244,267 - DDA3937_RS05570 0.25 -1.6
1,244,267 - DDA3937_RS05570 0.25 +1.2
1,244,304 + DDA3937_RS05570 0.33 -1.2
1,244,345 + DDA3937_RS05570 0.41 +0.3
1,244,345 + DDA3937_RS05570 0.41 -0.1
1,244,345 + DDA3937_RS05570 0.41 -0.3
1,244,346 - DDA3937_RS05570 0.41 -0.1
1,244,346 - DDA3937_RS05570 0.41 +1.3
1,244,346 - DDA3937_RS05570 0.41 -1.3
1,244,346 - DDA3937_RS05570 0.41 -0.7
1,244,346 - DDA3937_RS05570 0.41 +0.9
1,244,349 + DDA3937_RS05570 0.42 -0.7
1,244,350 - DDA3937_RS05570 0.42 -2.2
1,244,350 - DDA3937_RS05570 0.42 -0.7
1,244,350 - DDA3937_RS05570 0.42 -0.5
1,244,549 + DDA3937_RS05570 0.81 +1.2
1,244,550 - DDA3937_RS05570 0.82 -0.9
1,244,596 + -1.7
1,244,597 - +0.9
1,244,597 - +0.6
1,244,597 - -1.3
1,244,597 - +0.3
1,244,624 + -1.4
1,244,624 + +0.5
1,244,679 + -2.1
1,244,680 - -0.5
1,244,739 + -1.5
1,244,740 - -0.5
1,244,740 - -0.3
1,244,800 + +0.3
1,244,843 - DDA3937_RS05575 0.12 -1.1
1,245,234 + DDA3937_RS05575 0.41 +1.1
1,245,878 - DDA3937_RS05575 0.88 +1.1
1,246,047 - +1.3
1,246,047 - -1.1
1,246,047 - +0.1
1,246,069 + -0.6
1,246,069 + -1.2
1,246,074 + -0.6
1,246,095 + -0.1
1,246,095 + +0.8
1,246,096 - -1.4
1,246,116 + +0.7
1,246,117 - -1.9
1,246,170 - -1.4
1,246,178 + -1.1
1,246,187 + +0.2
1,246,187 + +0.4
1,246,187 + -0.5
1,246,187 + +0.5
1,246,187 + -0.6
1,246,188 - -1.2
1,246,188 - -0.1
1,246,188 - -0.2
1,246,188 - -2.6
1,246,211 + -0.8
1,246,223 + -1.4
1,246,249 - -0.3
1,246,249 - +0.6
1,246,312 + -0.3
1,246,313 - +0.6
1,246,313 - -0.8
1,246,313 - +0.6
1,246,336 + +3.5
1,246,337 - -0.3
1,246,337 - +0.0
1,246,393 + -0.5
1,246,394 - +0.4
1,246,403 + +1.1
1,246,403 + +0.0
1,246,497 + DDA3937_RS05580 0.20 +0.1
1,246,498 - DDA3937_RS05580 0.20 -0.2
1,246,501 + DDA3937_RS05580 0.21 -0.1
1,246,501 + DDA3937_RS05580 0.21 +0.0
1,246,501 + DDA3937_RS05580 0.21 -0.2
1,246,502 - DDA3937_RS05580 0.21 -1.2
1,246,541 - DDA3937_RS05580 0.29 -0.5
1,246,543 + DDA3937_RS05580 0.30 +0.7
1,246,543 + DDA3937_RS05580 0.30 -0.6
1,246,543 + DDA3937_RS05580 0.30 +0.4
1,246,543 + DDA3937_RS05580 0.30 -1.3
1,246,543 + DDA3937_RS05580 0.30 +1.5
1,246,548 + DDA3937_RS05580 0.31 +0.0
1,246,549 - DDA3937_RS05580 0.31 -0.5
1,246,549 - DDA3937_RS05580 0.31 +1.5
1,246,549 - DDA3937_RS05580 0.31 +0.0
1,246,549 - DDA3937_RS05580 0.31 -0.1
1,246,549 - DDA3937_RS05580 0.31 -0.2
1,246,549 - DDA3937_RS05580 0.31 -0.3
1,246,549 - +0.2
1,246,586 + DDA3937_RS05580 0.39 +0.9
1,246,586 + DDA3937_RS05580 0.39 -0.3
1,246,623 + DDA3937_RS05580 0.46 +1.5
1,246,623 + DDA3937_RS05580 0.46 -2.1
1,246,624 - DDA3937_RS05580 0.47 +0.4
1,246,624 - DDA3937_RS05580 0.47 -0.4
1,246,625 + DDA3937_RS05580 0.47 -0.1
1,246,625 + DDA3937_RS05580 0.47 -0.9
1,246,626 - DDA3937_RS05580 0.47 -0.2
1,246,626 - DDA3937_RS05580 0.47 -1.2
1,246,626 - DDA3937_RS05580 0.47 -0.6
1,246,626 - DDA3937_RS05580 0.47 -0.1
1,246,626 - DDA3937_RS05580 0.47 -1.4
1,246,649 + DDA3937_RS05580 0.52 -0.1
1,246,649 + DDA3937_RS05580 0.52 -0.2
1,246,649 + DDA3937_RS05580 0.52 +0.6
1,246,649 + DDA3937_RS05580 0.52 -0.8
1,246,649 + DDA3937_RS05580 0.52 -0.1
1,246,649 + DDA3937_RS05580 0.52 +0.1
1,246,649 + DDA3937_RS05580 0.52 +0.6
1,246,649 + -0.3
1,246,649 + DDA3937_RS05580 0.52 -0.1
1,246,649 + DDA3937_RS05580 0.52 +0.9
1,246,650 - DDA3937_RS05580 0.52 -0.1
1,246,650 - DDA3937_RS05580 0.52 +1.9
1,246,650 - DDA3937_RS05580 0.52 -0.1
1,246,650 - DDA3937_RS05580 0.52 -0.3
1,246,659 + DDA3937_RS05580 0.54 -1.1
1,246,714 + DDA3937_RS05580 0.65 -1.6
1,246,714 + DDA3937_RS05580 0.65 +0.3
1,246,714 + DDA3937_RS05580 0.65 -0.1
1,246,715 - DDA3937_RS05580 0.66 -0.3
1,246,715 - DDA3937_RS05580 0.66 -0.2
1,246,715 - DDA3937_RS05580 0.66 -0.6
1,246,715 - DDA3937_RS05580 0.66 -0.3
1,246,715 - DDA3937_RS05580 0.66 -0.1
1,246,717 + DDA3937_RS05580 0.66 +0.2
1,246,717 + DDA3937_RS05580 0.66 -1.1
1,246,717 + DDA3937_RS05580 0.66 -0.1
1,246,718 - DDA3937_RS05580 0.66 +0.1
1,246,718 - DDA3937_RS05580 0.66 -0.0
1,246,718 - +0.9
1,246,761 - DDA3937_RS05580 0.75 +0.5
1,246,775 - DDA3937_RS05580 0.78 +0.4
1,246,886 + DDA3937_RS23060 0.12 +0.6
1,246,886 + DDA3937_RS23060 0.12 +1.3
1,246,886 + DDA3937_RS23060 0.12 -0.4
1,246,887 - DDA3937_RS23060 0.13 -0.4
1,246,887 - DDA3937_RS23060 0.13 -3.0
1,246,920 - DDA3937_RS23060 0.30 +0.1
1,246,945 - DDA3937_RS23060 0.43 -0.6
1,246,945 - DDA3937_RS23060 0.43 -0.9
1,246,970 + DDA3937_RS23060 0.56 -0.3
1,246,970 + DDA3937_RS23060 0.56 -0.9
1,246,970 + DDA3937_RS23060 0.56 -1.2
1,246,980 + DDA3937_RS23060 0.61 -0.1
1,246,980 + DDA3937_RS23060 0.61 +1.7
1,246,994 + DDA3937_RS23060 0.69 -0.1
1,247,016 - DDA3937_RS23060 0.80 -0.2
1,247,016 - DDA3937_RS23060 0.80 -0.1
1,247,016 - DDA3937_RS23060 0.80 -0.4
1,247,041 - +1.2

Or see this region's nucleotide sequence