Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19825

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
4,515,929	+		DDA3937_RS19820	0.14	+0.1
4,515,947	+		DDA3937_RS19820	0.16	-0.8
4,515,980	-		DDA3937_RS19820	0.19	-0.3
4,516,007	+		DDA3937_RS19820	0.21	+0.7
4,516,008	-		DDA3937_RS19820	0.21	-0.7
4,516,008	-		DDA3937_RS19820	0.21	+0.8
4,516,008	-		DDA3937_RS19820	0.21	+0.5
4,516,070	+		DDA3937_RS19820	0.27	+0.2
4,516,071	-		DDA3937_RS19820	0.27	+0.1
4,516,074	-		DDA3937_RS19820	0.27	+0.1
4,516,074	-		DDA3937_RS19820	0.27	+1.0
4,516,087	+		DDA3937_RS19820	0.28	+0.6
4,516,088	-		DDA3937_RS19820	0.29	+0.3
4,516,228	+		DDA3937_RS19820	0.41	+3.0
4,516,229	-		DDA3937_RS19820	0.42	+0.7
4,516,229	-		DDA3937_RS19820	0.42	+0.0
4,516,229	-		DDA3937_RS19820	0.42	+0.1
4,516,229	-		DDA3937_RS19820	0.42	-0.9
4,516,271	+		DDA3937_RS19820	0.45	-0.4
4,516,318	+		DDA3937_RS19820	0.50	+0.6
4,516,318	+		DDA3937_RS19820	0.50	+0.1
4,516,319	-		DDA3937_RS19820	0.50	-2.1
4,516,352	+		DDA3937_RS19820	0.53	+0.9
4,516,352	+		DDA3937_RS19820	0.53	-0.1
4,516,410	+		DDA3937_RS19820	0.58	+0.1
4,516,410	+		DDA3937_RS19820	0.58	-2.3
4,516,410	+		DDA3937_RS19820	0.58	-1.7
4,516,410	+		DDA3937_RS19820	0.58	-0.0
4,516,410	+		DDA3937_RS19820	0.58	-0.7
4,516,411	-		DDA3937_RS19820	0.58	+1.0
4,516,411	-		DDA3937_RS19820	0.58	+0.2
4,516,411	-		DDA3937_RS19820	0.58	+0.1
4,516,411	-		DDA3937_RS19820	0.58	+0.2
4,516,411	-		DDA3937_RS19820	0.58	-1.1
4,516,532	+		DDA3937_RS19820	0.70	-2.3
4,516,532	+		DDA3937_RS19820	0.70	+1.5
4,516,532	+		DDA3937_RS19820	0.70	-0.9
4,516,532	+		DDA3937_RS19820	0.70	+0.7
4,516,532	+		DDA3937_RS19820	0.70	-0.9
4,516,532	+		DDA3937_RS19820	0.70	-0.8
4,516,532	+		DDA3937_RS19820	0.70	+0.6
4,516,532	+		DDA3937_RS19820	0.70	+0.4
4,516,532	+		DDA3937_RS19820	0.70	+0.2
4,516,533	-		DDA3937_RS19820	0.70	-0.9
4,516,533	-		DDA3937_RS19820	0.70	+0.2
4,516,533	-		DDA3937_RS19820	0.70	-0.2
4,516,533	-		DDA3937_RS19820	0.70	-0.0
4,516,533	-		DDA3937_RS19820	0.70	+0.2
4,516,539	-		DDA3937_RS19820	0.70	+1.3
4,516,539	-		DDA3937_RS19820	0.70	+0.5
4,516,539	-		DDA3937_RS19820	0.70	-0.3
4,516,608	-		DDA3937_RS19820	0.77	-1.1
4,516,608	-		DDA3937_RS19820	0.77	+0.0
4,516,608	-		DDA3937_RS19820	0.77	+2.8
4,516,697	+		DDA3937_RS19820	0.85	-0.5
4,516,698	-		DDA3937_RS19820	0.85	-0.8
4,516,698	-		DDA3937_RS19820	0.85	-0.3
4,516,727	+		DDA3937_RS19820	0.88	+0.7
4,516,727	+		DDA3937_RS19820	0.88	-0.8
4,516,728	-		DDA3937_RS19820	0.88	-0.3
4,516,728	-		DDA3937_RS19820	0.88	-0.1
4,516,752	-		DDA3937_RS19820	0.90	+0.1
4,516,752	-		DDA3937_RS19820	0.90	+0.6
4,516,752	-		DDA3937_RS19820	0.90	+0.3
4,516,860	-				-1.5
4,516,874	+				-1.9
4,516,875	-				-0.9
4,516,930	-				-0.8
4,516,994	+		DDA3937_RS19825	0.18	-0.4
4,517,034	+		DDA3937_RS19825	0.23	-1.4
4,517,258	+		DDA3937_RS19825	0.51	+0.7
4,517,363	+		DDA3937_RS19825	0.64	+0.5
4,517,364	-		DDA3937_RS19825	0.64	-1.5
4,517,364	-		DDA3937_RS19825	0.64	+0.1
4,517,364	-		DDA3937_RS19825	0.64	+0.9
4,517,437	-		DDA3937_RS19825	0.73	+1.2
4,517,437	-		DDA3937_RS19825	0.73	-1.6
4,517,454	+				+2.3
4,517,455	-		DDA3937_RS19825	0.76	-0.4
4,517,460	+		DDA3937_RS19825	0.76	-0.1
4,517,460	+		DDA3937_RS19825	0.76	-0.6
4,517,460	+		DDA3937_RS19825	0.76	-0.7
4,517,460	+		DDA3937_RS19825	0.76	+0.1
4,517,460	+		DDA3937_RS19825	0.76	-0.4
4,517,461	-		DDA3937_RS19825	0.76	-1.7
4,517,461	-		DDA3937_RS19825	0.76	+0.1
4,517,461	-		DDA3937_RS19825	0.76	-2.3
4,517,461	-		DDA3937_RS19825	0.76	-0.4
4,517,461	-		DDA3937_RS19825	0.76	-0.9
4,517,461	-		DDA3937_RS19825	0.76	+0.9
4,517,461	-		DDA3937_RS19825	0.76	-3.8
4,517,461	-		DDA3937_RS19825	0.76	-0.9
4,517,461	-		DDA3937_RS19825	0.76	+2.7
4,517,461	-		DDA3937_RS19825	0.76	-0.9
4,517,469	-		DDA3937_RS19825	0.77	-0.6
4,517,469	-		DDA3937_RS19825	0.77	-1.9
4,517,469	-		DDA3937_RS19825	0.77	+0.4
4,517,512	-		DDA3937_RS19825	0.83	+0.3
4,517,512	-		DDA3937_RS19825	0.83	-1.5
4,517,582	+				-1.7
4,517,582	+				-0.7
4,517,582	+				+0.3
4,517,582	+				-0.9
4,517,583	-				-1.1
4,517,645	+				+0.4
4,517,646	-				-0.1
4,517,649	+				-1.0
4,517,649	+				-0.1
4,517,649	+				-1.0
4,517,649	+				+0.3
4,517,649	+				+0.3
4,517,649	+				-1.3
4,517,649	+				-1.8
4,517,649	+				-1.0
4,517,649	+				+0.2
4,517,650	-				-0.6
4,517,650	-				+1.0
4,517,650	-				+1.0
4,517,650	-				-0.5
4,517,650	-				-0.7
4,517,650	-				-1.0
4,517,650	-				+0.0
4,517,650	-				-0.2
4,517,650	-				+0.4
4,517,650	-				-0.2
4,517,650	-				+0.2
4,517,650	-				-0.9
4,517,650	-				-0.5
4,517,650	-				-0.7
4,517,650	-				-1.3
4,517,650	-				-0.8
4,517,650	-				+0.5
4,517,650	-				-0.7
4,517,700	+				+0.6
4,517,700	+				-0.3
4,517,700	+				+0.3
4,517,701	-				+0.2
4,517,701	-				-0.3
4,517,701	-				+0.9
4,517,701	-				+2.9
4,517,701	-				-0.2
4,517,701	-				-0.2
4,517,701	-				-0.9
4,517,701	-				-0.3
4,517,703	+				-0.5
4,517,704	-				-1.9
4,517,704	-				-0.0
4,517,704	-				+0.3
4,517,709	+				-3.5
4,517,802	+		DDA3937_RS19830	0.10	-2.6
4,517,802	+		DDA3937_RS19830	0.10	-0.6
4,517,802	+		DDA3937_RS19830	0.10	+1.0
4,517,802	+		DDA3937_RS19830	0.10	-1.0
4,517,803	-		DDA3937_RS19830	0.10	-0.3
4,517,803	-		DDA3937_RS19830	0.10	-1.0
4,517,803	-				+2.3
4,517,803	-		DDA3937_RS19830	0.10	-1.2
4,517,803	-		DDA3937_RS19830	0.10	+0.3
4,517,803	-		DDA3937_RS19830	0.10	-0.9
4,517,803	-		DDA3937_RS19830	0.10	-1.9
4,517,918	+		DDA3937_RS19830	0.22	-0.8
4,517,918	+		DDA3937_RS19830	0.22	-0.1
4,517,918	+		DDA3937_RS19830	0.22	-0.1
4,517,918	+		DDA3937_RS19830	0.22	-2.5
4,517,919	-		DDA3937_RS19830	0.22	-0.8
4,517,920	+		DDA3937_RS19830	0.22	-0.7
4,517,920	+		DDA3937_RS19830	0.22	-1.8
4,517,920	+		DDA3937_RS19830	0.22	-0.7
4,517,920	+		DDA3937_RS19830	0.22	+0.9
4,517,921	-		DDA3937_RS19830	0.22	-0.1
4,517,921	-		DDA3937_RS19830	0.22	+0.1
4,517,921	-		DDA3937_RS19830	0.22	-2.3
4,517,921	-		DDA3937_RS19830	0.22	-0.5
4,517,921	-		DDA3937_RS19830	0.22	-1.9
4,517,921	-		DDA3937_RS19830	0.22	-1.5
4,517,921	-		DDA3937_RS19830	0.22	+0.3
4,517,921	-				-1.5
4,517,939	+		DDA3937_RS19830	0.24	+1.5
4,517,939	+		DDA3937_RS19830	0.24	-0.5
4,517,940	-		DDA3937_RS19830	0.24	-0.6
4,517,940	-		DDA3937_RS19830	0.24	-0.1
4,517,982	+		DDA3937_RS19830	0.28	-2.2
4,517,982	+		DDA3937_RS19830	0.28	-0.2
4,517,982	+				-1.5
4,517,982	+		DDA3937_RS19830	0.28	+0.3
4,517,982	+		DDA3937_RS19830	0.28	-1.0
4,517,982	+		DDA3937_RS19830	0.28	-0.2
4,517,983	-		DDA3937_RS19830	0.28	-1.4
4,517,983	-		DDA3937_RS19830	0.28	-1.0
4,517,983	-		DDA3937_RS19830	0.28	-1.3
4,518,021	+		DDA3937_RS19830	0.32	-0.4
4,518,022	-		DDA3937_RS19830	0.32	-1.5
4,518,114	+		DDA3937_RS19830	0.41	-0.2
4,518,114	+		DDA3937_RS19830	0.41	-0.2
4,518,114	+		DDA3937_RS19830	0.41	+0.3
4,518,114	+		DDA3937_RS19830	0.41	-2.2
4,518,114	+		DDA3937_RS19830	0.41	-0.5
4,518,114	+		DDA3937_RS19830	0.41	-0.0
4,518,114	+		DDA3937_RS19830	0.41	-1.3
4,518,114	+		DDA3937_RS19830	0.41	-0.9
4,518,114	+		DDA3937_RS19830	0.41	-0.8
4,518,115	-		DDA3937_RS19830	0.42	-0.7
4,518,115	-		DDA3937_RS19830	0.42	-1.1
4,518,115	-		DDA3937_RS19830	0.42	-0.7
4,518,117	+		DDA3937_RS19830	0.42	-0.7
4,518,117	+				-0.7
4,518,117	+				+1.7
4,518,118	-		DDA3937_RS19830	0.42	-2.9
4,518,118	-		DDA3937_RS19830	0.42	-1.1
4,518,118	-		DDA3937_RS19830	0.42	-0.4
4,518,304	+		DDA3937_RS19830	0.61	-1.9
4,518,304	+		DDA3937_RS19830	0.61	-0.7
4,518,304	+		DDA3937_RS19830	0.61	+1.3
4,518,304	+		DDA3937_RS19830	0.61	-1.7
4,518,307	-		DDA3937_RS19830	0.61	-1.7
4,518,307	-		DDA3937_RS19830	0.61	-1.8
4,518,357	+		DDA3937_RS19830	0.66	+0.5
4,518,364	+		DDA3937_RS19830	0.67	-0.1
4,518,365	-		DDA3937_RS19830	0.67	+0.1
4,518,374	-		DDA3937_RS19830	0.68	+0.7
4,518,374	-		DDA3937_RS19830	0.68	-2.3
4,518,450	+		DDA3937_RS19830	0.75	-1.2
4,518,471	+		DDA3937_RS19830	0.77	+0.2
4,518,471	+		DDA3937_RS19830	0.77	-0.5
4,518,472	-		DDA3937_RS19830	0.78	-0.9
4,518,486	+		DDA3937_RS19830	0.79	-0.4
4,518,487	-		DDA3937_RS19830	0.79	-0.1
4,518,495	+		DDA3937_RS19830	0.80	-1.1
4,518,496	-		DDA3937_RS19830	0.80	-0.5
4,518,496	-		DDA3937_RS19830	0.80	-1.2
4,518,496	-		DDA3937_RS19830	0.80	-1.1
4,518,525	-		DDA3937_RS19830	0.83	-1.2
4,518,525	-		DDA3937_RS19830	0.83	+0.5
4,518,550	+		DDA3937_RS19830	0.85	-0.5
4,518,627	-				-1.1
4,518,627	-				+0.4