Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18545 and DDA3937_RS18550 are separated by 99 nucleotides DDA3937_RS18550 and DDA3937_RS18555 are separated by 129 nucleotides DDA3937_RS18555 and DDA3937_RS18560 are separated by 11 nucleotides
DDA3937_RS18545: DDA3937_RS18545 - SprT family zinc-dependent metalloprotease, at 4,241,440 to 4,241,952
_RS18545
DDA3937_RS18550: DDA3937_RS18550 - deoxyribonuclease I, at 4,242,052 to 4,242,750
_RS18550
DDA3937_RS18555: DDA3937_RS18555 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 4,242,880 to 4,243,614
_RS18555
DDA3937_RS18560: DDA3937_RS18560 - glutathione synthase, at 4,243,626 to 4,244,579
_RS18560
Position (kb) 4242
4243
4244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4241.897 kb on - strand, within DDA3937_RS18545 at 4241.950 kb on + strand at 4241.950 kb on + strand at 4241.951 kb on - strand at 4242.002 kb on + strand at 4242.002 kb on + strand at 4242.003 kb on - strand at 4242.014 kb on - strand at 4242.014 kb on - strand at 4242.051 kb on + strand at 4242.051 kb on + strand at 4242.051 kb on + strand at 4242.051 kb on + strand at 4242.051 kb on + strand at 4242.051 kb on + strand at 4242.129 kb on + strand, within DDA3937_RS18550 at 4242.129 kb on + strand, within DDA3937_RS18550 at 4242.129 kb on + strand at 4242.129 kb on + strand, within DDA3937_RS18550 at 4242.130 kb on - strand, within DDA3937_RS18550 at 4242.130 kb on - strand, within DDA3937_RS18550 at 4242.136 kb on - strand, within DDA3937_RS18550 at 4242.136 kb on - strand, within DDA3937_RS18550 at 4242.190 kb on + strand, within DDA3937_RS18550 at 4242.190 kb on + strand, within DDA3937_RS18550 at 4242.190 kb on + strand, within DDA3937_RS18550 at 4242.190 kb on + strand, within DDA3937_RS18550 at 4242.190 kb on + strand, within DDA3937_RS18550 at 4242.191 kb on - strand, within DDA3937_RS18550 at 4242.191 kb on - strand, within DDA3937_RS18550 at 4242.191 kb on - strand, within DDA3937_RS18550 at 4242.191 kb on - strand, within DDA3937_RS18550 at 4242.191 kb on - strand, within DDA3937_RS18550 at 4242.191 kb on - strand, within DDA3937_RS18550 at 4242.201 kb on + strand, within DDA3937_RS18550 at 4242.201 kb on + strand, within DDA3937_RS18550 at 4242.201 kb on + strand at 4242.201 kb on + strand, within DDA3937_RS18550 at 4242.201 kb on + strand, within DDA3937_RS18550 at 4242.201 kb on + strand, within DDA3937_RS18550 at 4242.201 kb on + strand, within DDA3937_RS18550 at 4242.202 kb on - strand, within DDA3937_RS18550 at 4242.202 kb on - strand, within DDA3937_RS18550 at 4242.372 kb on + strand, within DDA3937_RS18550 at 4242.372 kb on + strand, within DDA3937_RS18550 at 4242.372 kb on + strand, within DDA3937_RS18550 at 4242.373 kb on - strand, within DDA3937_RS18550 at 4242.373 kb on - strand, within DDA3937_RS18550 at 4242.385 kb on + strand, within DDA3937_RS18550 at 4242.395 kb on + strand, within DDA3937_RS18550 at 4242.396 kb on - strand, within DDA3937_RS18550 at 4242.416 kb on + strand, within DDA3937_RS18550 at 4242.416 kb on + strand, within DDA3937_RS18550 at 4242.416 kb on + strand, within DDA3937_RS18550 at 4242.416 kb on + strand, within DDA3937_RS18550 at 4242.416 kb on + strand, within DDA3937_RS18550 at 4242.416 kb on + strand, within DDA3937_RS18550 at 4242.416 kb on + strand, within DDA3937_RS18550 at 4242.416 kb on + strand, within DDA3937_RS18550 at 4242.417 kb on - strand, within DDA3937_RS18550 at 4242.417 kb on - strand, within DDA3937_RS18550 at 4242.417 kb on - strand, within DDA3937_RS18550 at 4242.459 kb on + strand, within DDA3937_RS18550 at 4242.459 kb on + strand, within DDA3937_RS18550 at 4242.459 kb on + strand, within DDA3937_RS18550 at 4242.459 kb on + strand, within DDA3937_RS18550 at 4242.459 kb on + strand, within DDA3937_RS18550 at 4242.463 kb on + strand, within DDA3937_RS18550 at 4242.463 kb on + strand, within DDA3937_RS18550 at 4242.463 kb on + strand, within DDA3937_RS18550 at 4242.463 kb on + strand, within DDA3937_RS18550 at 4242.463 kb on + strand, within DDA3937_RS18550 at 4242.464 kb on - strand, within DDA3937_RS18550 at 4242.464 kb on - strand, within DDA3937_RS18550 at 4242.464 kb on - strand, within DDA3937_RS18550 at 4242.464 kb on - strand at 4242.464 kb on - strand, within DDA3937_RS18550 at 4242.464 kb on - strand, within DDA3937_RS18550 at 4242.464 kb on - strand, within DDA3937_RS18550 at 4242.464 kb on - strand, within DDA3937_RS18550 at 4242.464 kb on - strand, within DDA3937_RS18550 at 4242.522 kb on + strand, within DDA3937_RS18550 at 4242.577 kb on + strand, within DDA3937_RS18550 at 4242.577 kb on + strand, within DDA3937_RS18550 at 4242.578 kb on - strand, within DDA3937_RS18550 at 4242.578 kb on - strand, within DDA3937_RS18550 at 4242.578 kb on - strand, within DDA3937_RS18550 at 4242.578 kb on - strand, within DDA3937_RS18550 at 4242.578 kb on - strand, within DDA3937_RS18550 at 4242.583 kb on + strand, within DDA3937_RS18550 at 4242.583 kb on + strand, within DDA3937_RS18550 at 4242.583 kb on + strand, within DDA3937_RS18550 at 4242.584 kb on - strand, within DDA3937_RS18550 at 4242.584 kb on - strand, within DDA3937_RS18550 at 4242.584 kb on - strand, within DDA3937_RS18550 at 4242.584 kb on - strand, within DDA3937_RS18550 at 4242.599 kb on - strand, within DDA3937_RS18550 at 4242.599 kb on - strand, within DDA3937_RS18550 at 4242.705 kb on - strand at 4242.724 kb on + strand at 4242.724 kb on + strand at 4242.724 kb on + strand at 4242.724 kb on + strand at 4242.725 kb on - strand at 4242.725 kb on - strand at 4242.725 kb on - strand at 4242.761 kb on + strand at 4242.762 kb on - strand at 4242.762 kb on - strand at 4242.762 kb on - strand at 4242.764 kb on + strand at 4242.764 kb on + strand at 4242.764 kb on + strand at 4242.764 kb on + strand at 4242.765 kb on - strand at 4242.765 kb on - strand at 4242.765 kb on - strand at 4242.765 kb on - strand at 4242.781 kb on + strand at 4242.782 kb on - strand at 4242.782 kb on - strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.784 kb on - strand at 4242.784 kb on - strand at 4242.784 kb on - strand at 4242.784 kb on - strand at 4242.784 kb on - strand at 4242.864 kb on + strand at 4242.864 kb on + strand at 4242.864 kb on + strand at 4242.875 kb on + strand at 4242.876 kb on - strand at 4242.876 kb on - strand at 4242.876 kb on - strand at 4242.876 kb on - strand at 4242.876 kb on - strand at 4243.028 kb on + strand, within DDA3937_RS18555 at 4243.028 kb on + strand, within DDA3937_RS18555 at 4243.028 kb on + strand, within DDA3937_RS18555 at 4243.029 kb on - strand, within DDA3937_RS18555 at 4243.195 kb on - strand, within DDA3937_RS18555 at 4243.383 kb on - strand, within DDA3937_RS18555 at 4243.383 kb on - strand, within DDA3937_RS18555 at 4243.416 kb on + strand, within DDA3937_RS18555 at 4243.416 kb on + strand, within DDA3937_RS18555 at 4243.417 kb on - strand, within DDA3937_RS18555 at 4243.518 kb on + strand, within DDA3937_RS18555 at 4243.525 kb on - strand, within DDA3937_RS18555 at 4243.525 kb on - strand, within DDA3937_RS18555 at 4243.621 kb on + strand at 4243.621 kb on + strand at 4243.621 kb on + strand at 4243.670 kb on + strand at 4243.734 kb on + strand, within DDA3937_RS18560 at 4243.734 kb on + strand, within DDA3937_RS18560 at 4243.734 kb on + strand, within DDA3937_RS18560 at 4243.734 kb on + strand at 4243.737 kb on - strand at 4243.737 kb on - strand, within DDA3937_RS18560 at 4243.806 kb on + strand, within DDA3937_RS18560 at 4243.812 kb on + strand, within DDA3937_RS18560 at 4243.914 kb on + strand, within DDA3937_RS18560 at 4243.923 kb on + strand, within DDA3937_RS18560 at 4243.923 kb on + strand, within DDA3937_RS18560 at 4243.923 kb on + strand, within DDA3937_RS18560 at 4243.924 kb on - strand, within DDA3937_RS18560 at 4243.924 kb on - strand, within DDA3937_RS18560 at 4243.924 kb on - strand, within DDA3937_RS18560 at 4244.286 kb on + strand, within DDA3937_RS18560 at 4244.529 kb on - strand at 4244.532 kb on - strand at 4244.583 kb on + strand at 4244.611 kb on + strand at 4244.611 kb on + strand at 4244.611 kb on + strand at 4244.611 kb on + strand at 4244.611 kb on + strand at 4244.611 kb on + strand at 4244.612 kb on - strand at 4244.612 kb on - strand at 4244.612 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 4,241,897 - DDA3937_RS18545 0.89 -1.3 4,241,950 + +0.3 4,241,950 + +1.2 4,241,951 - -0.2 4,242,002 + +0.3 4,242,002 + +0.8 4,242,003 - -0.2 4,242,014 - +0.2 4,242,014 - +1.8 4,242,051 + +0.5 4,242,051 + -2.8 4,242,051 + +0.4 4,242,051 + -0.6 4,242,051 + -0.1 4,242,051 + +1.2 4,242,129 + DDA3937_RS18550 0.11 +0.2 4,242,129 + DDA3937_RS18550 0.11 -1.3 4,242,129 + +0.4 4,242,129 + DDA3937_RS18550 0.11 +1.7 4,242,130 - DDA3937_RS18550 0.11 -0.9 4,242,130 - DDA3937_RS18550 0.11 -0.9 4,242,136 - DDA3937_RS18550 0.12 -0.8 4,242,136 - DDA3937_RS18550 0.12 -1.7 4,242,190 + DDA3937_RS18550 0.20 -0.6 4,242,190 + DDA3937_RS18550 0.20 +0.3 4,242,190 + DDA3937_RS18550 0.20 -0.4 4,242,190 + DDA3937_RS18550 0.20 -1.6 4,242,190 + DDA3937_RS18550 0.20 +0.8 4,242,191 - DDA3937_RS18550 0.20 +0.1 4,242,191 - DDA3937_RS18550 0.20 +0.1 4,242,191 - DDA3937_RS18550 0.20 -1.0 4,242,191 - DDA3937_RS18550 0.20 +0.2 4,242,191 - DDA3937_RS18550 0.20 -0.5 4,242,191 - DDA3937_RS18550 0.20 +0.4 4,242,201 + DDA3937_RS18550 0.21 -0.2 4,242,201 + DDA3937_RS18550 0.21 -0.4 4,242,201 + -1.8 4,242,201 + DDA3937_RS18550 0.21 -2.1 4,242,201 + DDA3937_RS18550 0.21 -0.5 4,242,201 + DDA3937_RS18550 0.21 +0.6 4,242,201 + DDA3937_RS18550 0.21 +0.0 4,242,202 - DDA3937_RS18550 0.21 -0.7 4,242,202 - DDA3937_RS18550 0.21 +0.9 4,242,372 + DDA3937_RS18550 0.46 +0.1 4,242,372 + DDA3937_RS18550 0.46 -0.2 4,242,372 + DDA3937_RS18550 0.46 -0.6 4,242,373 - DDA3937_RS18550 0.46 +1.9 4,242,373 - DDA3937_RS18550 0.46 +0.9 4,242,385 + DDA3937_RS18550 0.48 -0.6 4,242,395 + DDA3937_RS18550 0.49 -1.5 4,242,396 - DDA3937_RS18550 0.49 -1.3 4,242,416 + DDA3937_RS18550 0.52 +0.2 4,242,416 + DDA3937_RS18550 0.52 -0.9 4,242,416 + DDA3937_RS18550 0.52 +0.5 4,242,416 + DDA3937_RS18550 0.52 -0.2 4,242,416 + DDA3937_RS18550 0.52 -0.4 4,242,416 + DDA3937_RS18550 0.52 -0.0 4,242,416 + DDA3937_RS18550 0.52 -0.5 4,242,416 + DDA3937_RS18550 0.52 +0.3 4,242,417 - DDA3937_RS18550 0.52 -2.4 4,242,417 - DDA3937_RS18550 0.52 +1.3 4,242,417 - DDA3937_RS18550 0.52 -3.1 4,242,459 + DDA3937_RS18550 0.58 -1.6 4,242,459 + DDA3937_RS18550 0.58 -0.4 4,242,459 + DDA3937_RS18550 0.58 -2.5 4,242,459 + DDA3937_RS18550 0.58 -0.3 4,242,459 + DDA3937_RS18550 0.58 -0.8 4,242,463 + DDA3937_RS18550 0.59 +3.2 4,242,463 + DDA3937_RS18550 0.59 -1.2 4,242,463 + DDA3937_RS18550 0.59 -1.4 4,242,463 + DDA3937_RS18550 0.59 +0.3 4,242,463 + DDA3937_RS18550 0.59 -2.0 4,242,464 - DDA3937_RS18550 0.59 +0.3 4,242,464 - DDA3937_RS18550 0.59 +0.0 4,242,464 - DDA3937_RS18550 0.59 +0.9 4,242,464 - -0.1 4,242,464 - DDA3937_RS18550 0.59 +1.2 4,242,464 - DDA3937_RS18550 0.59 +0.5 4,242,464 - DDA3937_RS18550 0.59 -1.0 4,242,464 - DDA3937_RS18550 0.59 -0.9 4,242,464 - DDA3937_RS18550 0.59 -1.0 4,242,522 + DDA3937_RS18550 0.67 +0.8 4,242,577 + DDA3937_RS18550 0.75 -0.1 4,242,577 + DDA3937_RS18550 0.75 -1.5 4,242,578 - DDA3937_RS18550 0.75 -0.4 4,242,578 - DDA3937_RS18550 0.75 -0.8 4,242,578 - DDA3937_RS18550 0.75 +1.4 4,242,578 - DDA3937_RS18550 0.75 +0.9 4,242,578 - DDA3937_RS18550 0.75 +0.7 4,242,583 + DDA3937_RS18550 0.76 -0.7 4,242,583 + DDA3937_RS18550 0.76 +0.2 4,242,583 + DDA3937_RS18550 0.76 -0.6 4,242,584 - DDA3937_RS18550 0.76 -1.7 4,242,584 - DDA3937_RS18550 0.76 -0.2 4,242,584 - DDA3937_RS18550 0.76 -0.9 4,242,584 - DDA3937_RS18550 0.76 +0.7 4,242,599 - DDA3937_RS18550 0.78 +1.2 4,242,599 - DDA3937_RS18550 0.78 -1.7 4,242,705 - +0.5 4,242,724 + -0.8 4,242,724 + +0.4 4,242,724 + -1.6 4,242,724 + -0.9 4,242,725 - -1.0 4,242,725 - -1.0 4,242,725 - -1.4 4,242,761 + -0.1 4,242,762 - -0.8 4,242,762 - +1.0 4,242,762 - -0.4 4,242,764 + -0.1 4,242,764 + +0.2 4,242,764 + +0.5 4,242,764 + -1.0 4,242,765 - +0.5 4,242,765 - -0.4 4,242,765 - -0.7 4,242,765 - +1.4 4,242,781 + -0.6 4,242,782 - -0.5 4,242,782 - -0.8 4,242,783 + -1.0 4,242,783 + +0.1 4,242,783 + -0.1 4,242,783 + -0.2 4,242,783 + -0.4 4,242,783 + +0.2 4,242,783 + +1.8 4,242,783 + -0.1 4,242,783 + -0.9 4,242,784 - -0.2 4,242,784 - +1.6 4,242,784 - +0.6 4,242,784 - -0.4 4,242,784 - +1.0 4,242,864 + +0.3 4,242,864 + -0.2 4,242,864 + +2.2 4,242,875 + +0.8 4,242,876 - -0.4 4,242,876 - -0.8 4,242,876 - +0.7 4,242,876 - +0.2 4,242,876 - -0.5 4,243,028 + DDA3937_RS18555 0.20 -0.4 4,243,028 + DDA3937_RS18555 0.20 +0.5 4,243,028 + DDA3937_RS18555 0.20 -2.0 4,243,029 - DDA3937_RS18555 0.20 +0.5 4,243,195 - DDA3937_RS18555 0.43 +1.0 4,243,383 - DDA3937_RS18555 0.68 +1.1 4,243,383 - DDA3937_RS18555 0.68 -0.6 4,243,416 + DDA3937_RS18555 0.73 -0.6 4,243,416 + DDA3937_RS18555 0.73 -1.1 4,243,417 - DDA3937_RS18555 0.73 +2.4 4,243,518 + DDA3937_RS18555 0.87 +2.5 4,243,525 - DDA3937_RS18555 0.88 +1.5 4,243,525 - DDA3937_RS18555 0.88 +1.0 4,243,621 + -0.5 4,243,621 + +0.3 4,243,621 + -1.6 4,243,670 + -0.6 4,243,734 + DDA3937_RS18560 0.11 -1.4 4,243,734 + DDA3937_RS18560 0.11 +1.2 4,243,734 + DDA3937_RS18560 0.11 -0.4 4,243,734 + +0.2 4,243,737 - -1.4 4,243,737 - DDA3937_RS18560 0.12 +0.5 4,243,806 + DDA3937_RS18560 0.19 +0.2 4,243,812 + DDA3937_RS18560 0.19 -2.3 4,243,914 + DDA3937_RS18560 0.30 -2.3 4,243,923 + DDA3937_RS18560 0.31 -2.3 4,243,923 + DDA3937_RS18560 0.31 +0.2 4,243,923 + DDA3937_RS18560 0.31 -1.0 4,243,924 - DDA3937_RS18560 0.31 +0.2 4,243,924 - DDA3937_RS18560 0.31 -1.4 4,243,924 - DDA3937_RS18560 0.31 -1.6 4,244,286 + DDA3937_RS18560 0.69 -2.0 4,244,529 - +0.2 4,244,532 - +0.8 4,244,583 + +0.6 4,244,611 + -0.3 4,244,611 + +0.7 4,244,611 + +0.5 4,244,611 + +0.4 4,244,611 + -0.7 4,244,611 + +0.7 4,244,612 - -0.7 4,244,612 - -0.0 4,244,612 - -0.4
Or see this region's nucleotide sequence