Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00800 and DDA3937_RS00805 are separated by 8 nucleotides DDA3937_RS00805 and DDA3937_RS00810 are separated by 251 nucleotides
DDA3937_RS00800: DDA3937_RS00800 - phage tail protein, at 187,676 to 188,968
_RS00800
DDA3937_RS00805: DDA3937_RS00805 - phage tail assembly chaperone, at 188,977 to 189,354
_RS00805
DDA3937_RS00810: DDA3937_RS00810 - phage tail protein, at 189,606 to 190,790
_RS00810
Position (kb) 187
188
189 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 186.681 kb on + strand at 186.681 kb on + strand at 186.695 kb on + strand at 186.695 kb on + strand at 186.695 kb on + strand at 186.695 kb on + strand at 186.696 kb on - strand at 186.835 kb on + strand at 186.835 kb on + strand at 186.836 kb on - strand at 186.836 kb on - strand at 186.904 kb on + strand at 186.905 kb on - strand at 186.933 kb on + strand at 186.990 kb on - strand at 187.044 kb on - strand at 187.160 kb on + strand at 187.204 kb on + strand at 187.234 kb on - strand at 187.238 kb on - strand at 187.339 kb on - strand at 187.340 kb on + strand at 187.555 kb on - strand at 187.652 kb on + strand at 187.653 kb on - strand at 187.689 kb on - strand at 187.694 kb on - strand at 187.694 kb on - strand at 187.694 kb on - strand at 187.694 kb on - strand at 187.895 kb on - strand, within DDA3937_RS00800 at 187.955 kb on + strand, within DDA3937_RS00800 at 187.955 kb on + strand, within DDA3937_RS00800 at 187.955 kb on + strand, within DDA3937_RS00800 at 187.955 kb on + strand, within DDA3937_RS00800 at 187.955 kb on + strand, within DDA3937_RS00800 at 187.955 kb on + strand, within DDA3937_RS00800 at 187.956 kb on - strand, within DDA3937_RS00800 at 187.956 kb on - strand, within DDA3937_RS00800 at 187.956 kb on - strand, within DDA3937_RS00800 at 187.956 kb on - strand, within DDA3937_RS00800 at 187.956 kb on - strand, within DDA3937_RS00800 at 188.003 kb on + strand, within DDA3937_RS00800 at 188.003 kb on + strand, within DDA3937_RS00800 at 188.004 kb on - strand, within DDA3937_RS00800 at 188.038 kb on - strand, within DDA3937_RS00800 at 188.071 kb on + strand, within DDA3937_RS00800 at 188.072 kb on - strand, within DDA3937_RS00800 at 188.127 kb on - strand, within DDA3937_RS00800 at 188.127 kb on - strand, within DDA3937_RS00800 at 188.127 kb on - strand, within DDA3937_RS00800 at 188.127 kb on - strand, within DDA3937_RS00800 at 188.127 kb on - strand at 188.146 kb on - strand, within DDA3937_RS00800 at 188.185 kb on + strand, within DDA3937_RS00800 at 188.192 kb on + strand, within DDA3937_RS00800 at 188.192 kb on + strand, within DDA3937_RS00800 at 188.218 kb on + strand, within DDA3937_RS00800 at 188.218 kb on + strand, within DDA3937_RS00800 at 188.219 kb on - strand, within DDA3937_RS00800 at 188.219 kb on - strand, within DDA3937_RS00800 at 188.219 kb on - strand, within DDA3937_RS00800 at 188.219 kb on - strand, within DDA3937_RS00800 at 188.246 kb on + strand, within DDA3937_RS00800 at 188.247 kb on - strand, within DDA3937_RS00800 at 188.344 kb on - strand, within DDA3937_RS00800 at 188.397 kb on + strand, within DDA3937_RS00800 at 188.398 kb on - strand, within DDA3937_RS00800 at 188.401 kb on + strand, within DDA3937_RS00800 at 188.401 kb on + strand, within DDA3937_RS00800 at 188.401 kb on + strand, within DDA3937_RS00800 at 188.456 kb on - strand, within DDA3937_RS00800 at 188.507 kb on - strand, within DDA3937_RS00800 at 188.544 kb on + strand, within DDA3937_RS00800 at 188.605 kb on - strand, within DDA3937_RS00800 at 188.705 kb on - strand, within DDA3937_RS00800 at 188.711 kb on - strand, within DDA3937_RS00800 at 188.749 kb on + strand, within DDA3937_RS00800 at 188.753 kb on - strand, within DDA3937_RS00800 at 188.768 kb on - strand, within DDA3937_RS00800 at 188.772 kb on + strand, within DDA3937_RS00800 at 188.773 kb on - strand, within DDA3937_RS00800 at 188.773 kb on - strand, within DDA3937_RS00800 at 188.773 kb on - strand, within DDA3937_RS00800 at 188.773 kb on - strand, within DDA3937_RS00800 at 188.804 kb on - strand, within DDA3937_RS00800 at 188.832 kb on - strand, within DDA3937_RS00800 at 188.864 kb on - strand at 188.866 kb on + strand at 188.973 kb on + strand at 188.973 kb on + strand at 188.974 kb on - strand at 188.976 kb on + strand at 188.983 kb on + strand at 189.058 kb on - strand, within DDA3937_RS00805 at 189.068 kb on - strand, within DDA3937_RS00805 at 189.068 kb on - strand, within DDA3937_RS00805 at 189.068 kb on - strand, within DDA3937_RS00805 at 189.102 kb on + strand, within DDA3937_RS00805 at 189.111 kb on + strand, within DDA3937_RS00805 at 189.139 kb on - strand at 189.210 kb on - strand, within DDA3937_RS00805 at 189.284 kb on + strand, within DDA3937_RS00805 at 189.326 kb on + strand at 189.327 kb on - strand at 189.327 kb on - strand at 189.327 kb on - strand at 189.327 kb on - strand at 189.465 kb on - strand at 189.477 kb on + strand at 189.511 kb on + strand at 189.511 kb on + strand at 189.512 kb on - strand at 189.512 kb on - strand at 189.558 kb on + strand at 189.591 kb on - strand at 189.591 kb on - strand at 189.591 kb on - strand at 189.599 kb on - strand at 189.618 kb on + strand at 189.618 kb on + strand at 189.619 kb on - strand at 189.632 kb on + strand at 189.632 kb on + strand at 189.689 kb on + strand at 189.689 kb on + strand at 189.692 kb on + strand at 189.692 kb on + strand at 189.692 kb on + strand at 189.692 kb on + strand at 189.693 kb on - strand at 189.693 kb on - strand at 189.693 kb on - strand at 189.698 kb on + strand at 189.698 kb on + strand at 189.698 kb on + strand at 189.698 kb on + strand at 189.698 kb on + strand at 189.698 kb on + strand at 189.698 kb on + strand at 189.698 kb on + strand at 189.698 kb on + strand at 189.698 kb on + strand at 189.698 kb on + strand at 189.698 kb on + strand at 189.698 kb on + strand at 189.698 kb on + strand at 189.698 kb on + strand at 189.699 kb on - strand at 189.699 kb on - strand at 189.699 kb on - strand at 189.699 kb on - strand at 189.699 kb on - strand at 189.699 kb on - strand at 189.700 kb on + strand at 189.700 kb on + strand at 189.700 kb on + strand at 189.700 kb on + strand at 189.700 kb on + strand at 189.701 kb on - strand at 189.701 kb on - strand at 189.701 kb on - strand at 189.789 kb on + strand, within DDA3937_RS00810 at 189.789 kb on + strand, within DDA3937_RS00810 at 189.789 kb on + strand, within DDA3937_RS00810 at 189.789 kb on + strand, within DDA3937_RS00810 at 189.789 kb on + strand, within DDA3937_RS00810 at 189.789 kb on + strand, within DDA3937_RS00810 at 189.885 kb on + strand, within DDA3937_RS00810 at 189.933 kb on + strand, within DDA3937_RS00810 at 189.933 kb on + strand, within DDA3937_RS00810 at 189.933 kb on + strand, within DDA3937_RS00810
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 186,681 + -0.7 186,681 + +1.0 186,695 + +1.6 186,695 + +0.6 186,695 + +0.5 186,695 + -0.6 186,696 - +0.9 186,835 + -2.6 186,835 + +2.6 186,836 - +0.8 186,836 - +2.8 186,904 + +1.0 186,905 - -0.9 186,933 + -1.6 186,990 - +0.8 187,044 - -0.2 187,160 + -0.8 187,204 + +0.4 187,234 - -0.1 187,238 - +0.0 187,339 - -0.0 187,340 + -0.9 187,555 - -1.3 187,652 + +0.8 187,653 - -1.0 187,689 - -1.1 187,694 - -2.4 187,694 - -1.6 187,694 - +0.3 187,694 - -0.4 187,895 - DDA3937_RS00800 0.17 -0.0 187,955 + DDA3937_RS00800 0.22 +0.5 187,955 + DDA3937_RS00800 0.22 -0.0 187,955 + DDA3937_RS00800 0.22 -0.0 187,955 + DDA3937_RS00800 0.22 +0.6 187,955 + DDA3937_RS00800 0.22 -0.1 187,955 + DDA3937_RS00800 0.22 -0.2 187,956 - DDA3937_RS00800 0.22 -0.8 187,956 - DDA3937_RS00800 0.22 -0.1 187,956 - DDA3937_RS00800 0.22 -0.6 187,956 - DDA3937_RS00800 0.22 -0.9 187,956 - DDA3937_RS00800 0.22 -0.5 188,003 + DDA3937_RS00800 0.25 -0.8 188,003 + DDA3937_RS00800 0.25 -0.2 188,004 - DDA3937_RS00800 0.25 +0.9 188,038 - DDA3937_RS00800 0.28 +0.3 188,071 + DDA3937_RS00800 0.31 +1.4 188,072 - DDA3937_RS00800 0.31 -0.3 188,127 - DDA3937_RS00800 0.35 +1.1 188,127 - DDA3937_RS00800 0.35 +0.6 188,127 - DDA3937_RS00800 0.35 -0.1 188,127 - DDA3937_RS00800 0.35 -0.3 188,127 - +1.1 188,146 - DDA3937_RS00800 0.36 +0.6 188,185 + DDA3937_RS00800 0.39 -0.2 188,192 + DDA3937_RS00800 0.40 +1.0 188,192 + DDA3937_RS00800 0.40 +0.2 188,218 + DDA3937_RS00800 0.42 -0.3 188,218 + DDA3937_RS00800 0.42 -2.6 188,219 - DDA3937_RS00800 0.42 -0.5 188,219 - DDA3937_RS00800 0.42 +0.7 188,219 - DDA3937_RS00800 0.42 -0.2 188,219 - DDA3937_RS00800 0.42 -2.4 188,246 + DDA3937_RS00800 0.44 +0.4 188,247 - DDA3937_RS00800 0.44 -0.0 188,344 - DDA3937_RS00800 0.52 +0.4 188,397 + DDA3937_RS00800 0.56 +0.0 188,398 - DDA3937_RS00800 0.56 +0.6 188,401 + DDA3937_RS00800 0.56 -0.3 188,401 + DDA3937_RS00800 0.56 +0.5 188,401 + DDA3937_RS00800 0.56 +0.4 188,456 - DDA3937_RS00800 0.60 -1.0 188,507 - DDA3937_RS00800 0.64 -1.1 188,544 + DDA3937_RS00800 0.67 -0.2 188,605 - DDA3937_RS00800 0.72 -0.8 188,705 - DDA3937_RS00800 0.80 -0.3 188,711 - DDA3937_RS00800 0.80 -1.6 188,749 + DDA3937_RS00800 0.83 +1.1 188,753 - DDA3937_RS00800 0.83 -2.4 188,768 - DDA3937_RS00800 0.84 -0.3 188,772 + DDA3937_RS00800 0.85 -1.3 188,773 - DDA3937_RS00800 0.85 -0.2 188,773 - DDA3937_RS00800 0.85 -0.8 188,773 - DDA3937_RS00800 0.85 +1.2 188,773 - DDA3937_RS00800 0.85 -1.4 188,804 - DDA3937_RS00800 0.87 -0.6 188,832 - DDA3937_RS00800 0.89 +0.3 188,864 - +0.0 188,866 + -0.2 188,973 + +0.1 188,973 + +0.7 188,974 - +1.6 188,976 + +0.1 188,983 + -0.0 189,058 - DDA3937_RS00805 0.21 -0.5 189,068 - DDA3937_RS00805 0.24 +0.0 189,068 - DDA3937_RS00805 0.24 +0.1 189,068 - DDA3937_RS00805 0.24 -0.5 189,102 + DDA3937_RS00805 0.33 -0.5 189,111 + DDA3937_RS00805 0.35 -1.3 189,139 - -1.9 189,210 - DDA3937_RS00805 0.62 +0.0 189,284 + DDA3937_RS00805 0.81 +0.0 189,326 + +0.4 189,327 - -0.5 189,327 - +1.1 189,327 - +0.1 189,327 - -0.4 189,465 - +1.0 189,477 + -0.7 189,511 + -0.8 189,511 + -0.7 189,512 - +0.5 189,512 - -0.4 189,558 + +0.7 189,591 - -0.3 189,591 - -0.7 189,591 - +0.5 189,599 - +0.6 189,618 + +0.0 189,618 + +1.0 189,619 - -0.8 189,632 + +0.5 189,632 + -0.5 189,689 + +0.4 189,689 + +1.0 189,692 + +1.4 189,692 + +0.2 189,692 + +2.4 189,692 + -0.6 189,693 - +2.4 189,693 - +0.7 189,693 - +0.4 189,698 + -0.5 189,698 + +0.4 189,698 + -0.7 189,698 + +0.2 189,698 + +0.2 189,698 + +0.0 189,698 + +0.3 189,698 + -0.2 189,698 + -0.6 189,698 + -0.6 189,698 + +0.9 189,698 + -2.3 189,698 + -1.8 189,698 + +0.3 189,698 + -0.6 189,699 - -0.6 189,699 - -0.2 189,699 - +0.5 189,699 - -0.8 189,699 - -0.0 189,699 - -1.3 189,700 + -0.4 189,700 + -1.0 189,700 + +1.0 189,700 + +0.4 189,700 + +0.5 189,701 - -0.8 189,701 - -0.1 189,701 - +0.8 189,789 + DDA3937_RS00810 0.15 +1.3 189,789 + DDA3937_RS00810 0.15 -0.2 189,789 + DDA3937_RS00810 0.15 +1.7 189,789 + DDA3937_RS00810 0.15 -0.2 189,789 + DDA3937_RS00810 0.15 +0.4 189,789 + DDA3937_RS00810 0.15 -0.0 189,885 + DDA3937_RS00810 0.24 -1.7 189,933 + DDA3937_RS00810 0.28 -0.1 189,933 + DDA3937_RS00810 0.28 -0.5 189,933 + DDA3937_RS00810 0.28 +0.7
Or see this region's nucleotide sequence