Experiment: M9+starch
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19650 and DDA3937_RS19655 are separated by 56 nucleotides DDA3937_RS19655 and DDA3937_RS19660 are separated by 169 nucleotides DDA3937_RS19660 and DDA3937_RS19665 are separated by 12 nucleotides
DDA3937_RS19650: DDA3937_RS19650 - DNA utilization protein GntX, at 4,471,231 to 4,471,935
_RS19650
DDA3937_RS19655: DDA3937_RS19655 - Fe-S biogenesis protein NfuA, at 4,471,992 to 4,472,567
_RS19655
DDA3937_RS19660: DDA3937_RS19660 - 4-alpha-glucanotransferase, at 4,472,737 to 4,474,923
_RS19660
DDA3937_RS19665: DDA3937_RS19665 - maltodextrin phosphorylase, at 4,474,936 to 4,477,353
_RS19665
Position (kb) 4472
4473
4474
4475 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4471.817 kb on + strand, within DDA3937_RS19650 at 4471.878 kb on - strand at 4471.951 kb on + strand at 4471.952 kb on - strand at 4471.954 kb on + strand at 4471.954 kb on + strand at 4471.954 kb on + strand at 4471.954 kb on + strand at 4471.955 kb on - strand at 4471.956 kb on + strand at 4471.956 kb on + strand at 4471.957 kb on - strand at 4471.977 kb on + strand at 4471.986 kb on - strand at 4472.559 kb on + strand at 4472.559 kb on + strand at 4472.560 kb on - strand at 4472.560 kb on - strand at 4472.560 kb on - strand at 4472.569 kb on - strand at 4472.580 kb on + strand at 4472.580 kb on + strand at 4472.580 kb on + strand at 4472.580 kb on + strand at 4472.580 kb on + strand at 4472.580 kb on + strand at 4472.580 kb on + strand at 4472.580 kb on + strand at 4472.580 kb on + strand at 4472.581 kb on - strand at 4472.583 kb on + strand at 4472.583 kb on + strand at 4472.583 kb on + strand at 4472.584 kb on - strand at 4472.584 kb on - strand at 4472.584 kb on - strand at 4472.587 kb on + strand at 4472.588 kb on - strand at 4472.588 kb on - strand at 4472.588 kb on - strand at 4472.588 kb on - strand at 4472.652 kb on - strand at 4472.769 kb on + strand at 4472.769 kb on + strand at 4472.769 kb on + strand at 4472.770 kb on - strand at 4472.770 kb on - strand at 4472.770 kb on - strand at 4472.770 kb on - strand at 4472.786 kb on - strand at 4472.786 kb on - strand at 4472.855 kb on - strand at 4472.903 kb on + strand at 4472.904 kb on - strand at 4473.056 kb on + strand, within DDA3937_RS19660 at 4473.057 kb on - strand, within DDA3937_RS19660 at 4473.057 kb on - strand, within DDA3937_RS19660 at 4473.203 kb on - strand, within DDA3937_RS19660 at 4473.218 kb on + strand, within DDA3937_RS19660 at 4473.218 kb on + strand, within DDA3937_RS19660 at 4473.219 kb on - strand, within DDA3937_RS19660 at 4473.219 kb on - strand, within DDA3937_RS19660 at 4473.377 kb on + strand, within DDA3937_RS19660 at 4473.377 kb on + strand, within DDA3937_RS19660 at 4473.377 kb on + strand, within DDA3937_RS19660 at 4473.378 kb on - strand, within DDA3937_RS19660 at 4473.378 kb on - strand, within DDA3937_RS19660 at 4473.378 kb on - strand, within DDA3937_RS19660 at 4473.378 kb on - strand, within DDA3937_RS19660 at 4473.378 kb on - strand, within DDA3937_RS19660 at 4473.383 kb on + strand, within DDA3937_RS19660 at 4473.383 kb on + strand, within DDA3937_RS19660 at 4473.383 kb on + strand, within DDA3937_RS19660 at 4473.384 kb on - strand, within DDA3937_RS19660 at 4473.509 kb on + strand, within DDA3937_RS19660 at 4473.518 kb on + strand, within DDA3937_RS19660 at 4473.518 kb on + strand, within DDA3937_RS19660 at 4473.518 kb on + strand, within DDA3937_RS19660 at 4473.518 kb on + strand, within DDA3937_RS19660 at 4473.518 kb on + strand, within DDA3937_RS19660 at 4473.518 kb on + strand, within DDA3937_RS19660 at 4473.518 kb on + strand, within DDA3937_RS19660 at 4473.518 kb on + strand, within DDA3937_RS19660 at 4473.518 kb on + strand, within DDA3937_RS19660 at 4473.518 kb on + strand, within DDA3937_RS19660 at 4473.518 kb on + strand, within DDA3937_RS19660 at 4473.518 kb on + strand, within DDA3937_RS19660 at 4473.519 kb on - strand, within DDA3937_RS19660 at 4473.519 kb on - strand, within DDA3937_RS19660 at 4473.519 kb on - strand, within DDA3937_RS19660 at 4473.812 kb on + strand, within DDA3937_RS19660 at 4473.812 kb on + strand, within DDA3937_RS19660 at 4473.896 kb on + strand, within DDA3937_RS19660 at 4473.896 kb on + strand, within DDA3937_RS19660 at 4473.896 kb on + strand, within DDA3937_RS19660 at 4473.897 kb on - strand, within DDA3937_RS19660 at 4473.897 kb on - strand, within DDA3937_RS19660 at 4473.897 kb on - strand, within DDA3937_RS19660 at 4473.904 kb on + strand, within DDA3937_RS19660 at 4473.904 kb on + strand, within DDA3937_RS19660 at 4473.904 kb on + strand, within DDA3937_RS19660 at 4473.904 kb on + strand, within DDA3937_RS19660 at 4473.904 kb on + strand, within DDA3937_RS19660 at 4473.904 kb on + strand, within DDA3937_RS19660 at 4473.905 kb on - strand, within DDA3937_RS19660 at 4473.905 kb on - strand, within DDA3937_RS19660 at 4473.905 kb on - strand, within DDA3937_RS19660 at 4473.905 kb on - strand, within DDA3937_RS19660 at 4473.962 kb on + strand, within DDA3937_RS19660 at 4474.034 kb on + strand, within DDA3937_RS19660 at 4474.035 kb on - strand at 4474.035 kb on - strand, within DDA3937_RS19660 at 4474.035 kb on - strand, within DDA3937_RS19660 at 4474.035 kb on - strand, within DDA3937_RS19660 at 4474.293 kb on + strand, within DDA3937_RS19660 at 4474.295 kb on + strand, within DDA3937_RS19660 at 4474.295 kb on + strand, within DDA3937_RS19660 at 4474.295 kb on + strand, within DDA3937_RS19660 at 4474.295 kb on + strand, within DDA3937_RS19660 at 4474.295 kb on + strand, within DDA3937_RS19660 at 4474.296 kb on - strand, within DDA3937_RS19660 at 4474.296 kb on - strand, within DDA3937_RS19660 at 4474.296 kb on - strand, within DDA3937_RS19660 at 4474.296 kb on - strand, within DDA3937_RS19660 at 4474.296 kb on - strand, within DDA3937_RS19660 at 4474.296 kb on - strand, within DDA3937_RS19660 at 4474.296 kb on - strand, within DDA3937_RS19660 at 4474.296 kb on - strand, within DDA3937_RS19660 at 4474.299 kb on + strand, within DDA3937_RS19660 at 4474.299 kb on + strand, within DDA3937_RS19660 at 4474.300 kb on - strand, within DDA3937_RS19660 at 4474.300 kb on - strand, within DDA3937_RS19660 at 4474.300 kb on - strand, within DDA3937_RS19660 at 4474.303 kb on - strand, within DDA3937_RS19660 at 4474.303 kb on - strand at 4474.381 kb on - strand, within DDA3937_RS19660 at 4474.480 kb on - strand, within DDA3937_RS19660 at 4474.481 kb on + strand, within DDA3937_RS19660 at 4474.481 kb on + strand, within DDA3937_RS19660 at 4474.481 kb on + strand, within DDA3937_RS19660 at 4474.481 kb on + strand, within DDA3937_RS19660 at 4474.482 kb on - strand, within DDA3937_RS19660 at 4474.482 kb on - strand, within DDA3937_RS19660 at 4474.482 kb on - strand, within DDA3937_RS19660 at 4474.482 kb on - strand, within DDA3937_RS19660 at 4474.482 kb on - strand, within DDA3937_RS19660 at 4474.482 kb on - strand, within DDA3937_RS19660 at 4474.538 kb on + strand, within DDA3937_RS19660 at 4474.539 kb on - strand, within DDA3937_RS19660 at 4474.598 kb on - strand, within DDA3937_RS19660 at 4474.689 kb on - strand, within DDA3937_RS19660 at 4474.707 kb on - strand at 4474.734 kb on + strand at 4474.734 kb on + strand at 4474.735 kb on - strand at 4474.838 kb on - strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.869 kb on - strand at 4474.869 kb on - strand at 4474.869 kb on - strand at 4474.869 kb on - strand at 4474.872 kb on + strand at 4474.872 kb on + strand at 4474.872 kb on + strand at 4474.872 kb on + strand at 4474.873 kb on - strand at 4474.873 kb on - strand at 4474.873 kb on - strand at 4474.873 kb on - strand at 4474.873 kb on - strand at 4474.873 kb on - strand at 4474.926 kb on + strand at 4474.926 kb on + strand at 4474.968 kb on - strand at 4475.005 kb on - strand at 4475.055 kb on - strand at 4475.087 kb on + strand at 4475.131 kb on + strand at 4475.131 kb on + strand at 4475.132 kb on - strand at 4475.167 kb on - strand at 4475.215 kb on + strand, within DDA3937_RS19665 at 4475.237 kb on + strand, within DDA3937_RS19665 at 4475.250 kb on + strand at 4475.251 kb on - strand, within DDA3937_RS19665 at 4475.444 kb on - strand, within DDA3937_RS19665 at 4475.567 kb on + strand, within DDA3937_RS19665 at 4475.567 kb on + strand, within DDA3937_RS19665 at 4475.567 kb on + strand, within DDA3937_RS19665 at 4475.567 kb on + strand, within DDA3937_RS19665 at 4475.568 kb on - strand, within DDA3937_RS19665 at 4475.568 kb on - strand, within DDA3937_RS19665 at 4475.568 kb on - strand, within DDA3937_RS19665 at 4475.568 kb on - strand, within DDA3937_RS19665 at 4475.568 kb on - strand, within DDA3937_RS19665 at 4475.568 kb on - strand, within DDA3937_RS19665 at 4475.571 kb on + strand, within DDA3937_RS19665 at 4475.571 kb on + strand, within DDA3937_RS19665 at 4475.571 kb on + strand, within DDA3937_RS19665 at 4475.572 kb on - strand, within DDA3937_RS19665 at 4475.669 kb on + strand, within DDA3937_RS19665 at 4475.669 kb on + strand, within DDA3937_RS19665 at 4475.669 kb on + strand, within DDA3937_RS19665 at 4475.669 kb on + strand, within DDA3937_RS19665 at 4475.669 kb on + strand, within DDA3937_RS19665 at 4475.670 kb on - strand, within DDA3937_RS19665 at 4475.670 kb on - strand, within DDA3937_RS19665 at 4475.670 kb on - strand, within DDA3937_RS19665 at 4475.711 kb on + strand, within DDA3937_RS19665 at 4475.712 kb on - strand, within DDA3937_RS19665 at 4475.712 kb on - strand, within DDA3937_RS19665 at 4475.752 kb on - strand, within DDA3937_RS19665
Per-strain Table
Position Strand Gene LocusTag Fraction M9+starch remove 4,471,817 + DDA3937_RS19650 0.83 +0.3 4,471,878 - -1.4 4,471,951 + -0.3 4,471,952 - +0.7 4,471,954 + -0.4 4,471,954 + -1.0 4,471,954 + -1.3 4,471,954 + +0.1 4,471,955 - +0.3 4,471,956 + -0.5 4,471,956 + -0.8 4,471,957 - -0.3 4,471,977 + -0.5 4,471,986 - -0.1 4,472,559 + +0.7 4,472,559 + -0.3 4,472,560 - +1.3 4,472,560 - +0.4 4,472,560 - -0.1 4,472,569 - -0.2 4,472,580 + +1.3 4,472,580 + -0.3 4,472,580 + +0.8 4,472,580 + -2.3 4,472,580 + -0.5 4,472,580 + +0.9 4,472,580 + -0.8 4,472,580 + +1.3 4,472,580 + -0.7 4,472,581 - -1.3 4,472,583 + -0.5 4,472,583 + -0.3 4,472,583 + -1.5 4,472,584 - +0.3 4,472,584 - +0.1 4,472,584 - -0.4 4,472,587 + +1.7 4,472,588 - +0.2 4,472,588 - +0.9 4,472,588 - +1.5 4,472,588 - -0.3 4,472,652 - -1.7 4,472,769 + -1.1 4,472,769 + -1.0 4,472,769 + +0.1 4,472,770 - -1.5 4,472,770 - -1.9 4,472,770 - -1.2 4,472,770 - -0.9 4,472,786 - -2.4 4,472,786 - -2.4 4,472,855 - -0.3 4,472,903 + -1.0 4,472,904 - -2.6 4,473,056 + DDA3937_RS19660 0.15 -1.0 4,473,057 - DDA3937_RS19660 0.15 -2.0 4,473,057 - DDA3937_RS19660 0.15 -1.0 4,473,203 - DDA3937_RS19660 0.21 -1.4 4,473,218 + DDA3937_RS19660 0.22 +0.3 4,473,218 + DDA3937_RS19660 0.22 -1.5 4,473,219 - DDA3937_RS19660 0.22 -1.0 4,473,219 - DDA3937_RS19660 0.22 -3.3 4,473,377 + DDA3937_RS19660 0.29 -4.1 4,473,377 + DDA3937_RS19660 0.29 -1.7 4,473,377 + DDA3937_RS19660 0.29 -2.1 4,473,378 - DDA3937_RS19660 0.29 -1.2 4,473,378 - DDA3937_RS19660 0.29 -1.5 4,473,378 - DDA3937_RS19660 0.29 +0.3 4,473,378 - DDA3937_RS19660 0.29 -1.7 4,473,378 - DDA3937_RS19660 0.29 +0.3 4,473,383 + DDA3937_RS19660 0.30 -2.5 4,473,383 + DDA3937_RS19660 0.30 -2.2 4,473,383 + DDA3937_RS19660 0.30 -3.0 4,473,384 - DDA3937_RS19660 0.30 -3.7 4,473,509 + DDA3937_RS19660 0.35 -1.5 4,473,518 + DDA3937_RS19660 0.36 -2.9 4,473,518 + DDA3937_RS19660 0.36 -3.5 4,473,518 + DDA3937_RS19660 0.36 -1.3 4,473,518 + DDA3937_RS19660 0.36 -2.3 4,473,518 + DDA3937_RS19660 0.36 -2.7 4,473,518 + DDA3937_RS19660 0.36 -2.2 4,473,518 + DDA3937_RS19660 0.36 -0.1 4,473,518 + DDA3937_RS19660 0.36 +0.7 4,473,518 + DDA3937_RS19660 0.36 -0.8 4,473,518 + DDA3937_RS19660 0.36 -1.9 4,473,518 + DDA3937_RS19660 0.36 -2.2 4,473,518 + DDA3937_RS19660 0.36 -1.7 4,473,519 - DDA3937_RS19660 0.36 -2.2 4,473,519 - DDA3937_RS19660 0.36 -1.5 4,473,519 - DDA3937_RS19660 0.36 -3.0 4,473,812 + DDA3937_RS19660 0.49 -2.6 4,473,812 + DDA3937_RS19660 0.49 -3.2 4,473,896 + DDA3937_RS19660 0.53 -1.4 4,473,896 + DDA3937_RS19660 0.53 -1.5 4,473,896 + DDA3937_RS19660 0.53 -1.2 4,473,897 - DDA3937_RS19660 0.53 -2.5 4,473,897 - DDA3937_RS19660 0.53 -1.8 4,473,897 - DDA3937_RS19660 0.53 -1.0 4,473,904 + DDA3937_RS19660 0.53 -2.0 4,473,904 + DDA3937_RS19660 0.53 -1.5 4,473,904 + DDA3937_RS19660 0.53 -0.7 4,473,904 + DDA3937_RS19660 0.53 +0.3 4,473,904 + DDA3937_RS19660 0.53 -1.5 4,473,904 + DDA3937_RS19660 0.53 -1.9 4,473,905 - DDA3937_RS19660 0.53 -2.4 4,473,905 - DDA3937_RS19660 0.53 -2.0 4,473,905 - DDA3937_RS19660 0.53 +1.0 4,473,905 - DDA3937_RS19660 0.53 -0.7 4,473,962 + DDA3937_RS19660 0.56 -0.7 4,474,034 + DDA3937_RS19660 0.59 -2.9 4,474,035 - -1.5 4,474,035 - DDA3937_RS19660 0.59 -1.5 4,474,035 - DDA3937_RS19660 0.59 -0.8 4,474,035 - DDA3937_RS19660 0.59 -1.8 4,474,293 + DDA3937_RS19660 0.71 -0.3 4,474,295 + DDA3937_RS19660 0.71 -0.8 4,474,295 + DDA3937_RS19660 0.71 -0.9 4,474,295 + DDA3937_RS19660 0.71 -1.3 4,474,295 + DDA3937_RS19660 0.71 -2.1 4,474,295 + DDA3937_RS19660 0.71 -0.7 4,474,296 - DDA3937_RS19660 0.71 -2.8 4,474,296 - DDA3937_RS19660 0.71 +0.3 4,474,296 - DDA3937_RS19660 0.71 -1.3 4,474,296 - DDA3937_RS19660 0.71 +1.0 4,474,296 - DDA3937_RS19660 0.71 -4.4 4,474,296 - DDA3937_RS19660 0.71 +0.9 4,474,296 - DDA3937_RS19660 0.71 -2.2 4,474,296 - DDA3937_RS19660 0.71 -2.2 4,474,299 + DDA3937_RS19660 0.71 -2.4 4,474,299 + DDA3937_RS19660 0.71 -1.5 4,474,300 - DDA3937_RS19660 0.71 -1.5 4,474,300 - DDA3937_RS19660 0.71 -2.1 4,474,300 - DDA3937_RS19660 0.71 -2.6 4,474,303 - DDA3937_RS19660 0.72 -3.2 4,474,303 - -1.9 4,474,381 - DDA3937_RS19660 0.75 -2.3 4,474,480 - DDA3937_RS19660 0.80 -2.7 4,474,481 + DDA3937_RS19660 0.80 -1.7 4,474,481 + DDA3937_RS19660 0.80 -2.5 4,474,481 + DDA3937_RS19660 0.80 -1.0 4,474,481 + DDA3937_RS19660 0.80 +0.3 4,474,482 - DDA3937_RS19660 0.80 -2.3 4,474,482 - DDA3937_RS19660 0.80 -3.8 4,474,482 - DDA3937_RS19660 0.80 -2.2 4,474,482 - DDA3937_RS19660 0.80 -1.5 4,474,482 - DDA3937_RS19660 0.80 -0.4 4,474,482 - DDA3937_RS19660 0.80 -2.8 4,474,538 + DDA3937_RS19660 0.82 -2.2 4,474,539 - DDA3937_RS19660 0.82 -2.2 4,474,598 - DDA3937_RS19660 0.85 -0.8 4,474,689 - DDA3937_RS19660 0.89 -3.2 4,474,707 - -0.2 4,474,734 + -2.0 4,474,734 + -2.2 4,474,735 - -2.7 4,474,838 - -2.7 4,474,868 + -1.0 4,474,868 + -2.4 4,474,868 + -2.2 4,474,868 + -2.9 4,474,868 + -1.6 4,474,868 + -1.5 4,474,868 + -2.0 4,474,868 + -1.3 4,474,868 + -1.0 4,474,868 + -2.2 4,474,868 + -0.0 4,474,869 - -1.2 4,474,869 - -2.8 4,474,869 - -0.3 4,474,869 - -2.0 4,474,872 + +0.3 4,474,872 + -2.0 4,474,872 + -1.9 4,474,872 + -1.8 4,474,873 - -1.5 4,474,873 - -1.9 4,474,873 - -3.3 4,474,873 - -2.2 4,474,873 - -2.2 4,474,873 - -1.9 4,474,926 + -2.4 4,474,926 + -1.5 4,474,968 - -1.0 4,475,005 - -1.5 4,475,055 - +1.9 4,475,087 + -0.9 4,475,131 + -0.0 4,475,131 + -2.5 4,475,132 - -0.1 4,475,167 - -0.5 4,475,215 + DDA3937_RS19665 0.12 +0.5 4,475,237 + DDA3937_RS19665 0.12 -1.2 4,475,250 + -0.7 4,475,251 - DDA3937_RS19665 0.13 +0.6 4,475,444 - DDA3937_RS19665 0.21 +0.1 4,475,567 + DDA3937_RS19665 0.26 -2.3 4,475,567 + DDA3937_RS19665 0.26 -2.0 4,475,567 + DDA3937_RS19665 0.26 -0.1 4,475,567 + DDA3937_RS19665 0.26 -1.8 4,475,568 - DDA3937_RS19665 0.26 +0.7 4,475,568 - DDA3937_RS19665 0.26 +0.2 4,475,568 - DDA3937_RS19665 0.26 +0.4 4,475,568 - DDA3937_RS19665 0.26 -1.1 4,475,568 - DDA3937_RS19665 0.26 +0.7 4,475,568 - DDA3937_RS19665 0.26 +0.8 4,475,571 + DDA3937_RS19665 0.26 +0.7 4,475,571 + DDA3937_RS19665 0.26 -0.3 4,475,571 + DDA3937_RS19665 0.26 -1.9 4,475,572 - DDA3937_RS19665 0.26 -0.3 4,475,669 + DDA3937_RS19665 0.30 -1.0 4,475,669 + DDA3937_RS19665 0.30 -2.9 4,475,669 + DDA3937_RS19665 0.30 -2.0 4,475,669 + DDA3937_RS19665 0.30 +1.1 4,475,669 + DDA3937_RS19665 0.30 -0.6 4,475,670 - DDA3937_RS19665 0.30 +1.4 4,475,670 - DDA3937_RS19665 0.30 +1.5 4,475,670 - DDA3937_RS19665 0.30 -1.3 4,475,711 + DDA3937_RS19665 0.32 -2.1 4,475,712 - DDA3937_RS19665 0.32 -1.0 4,475,712 - DDA3937_RS19665 0.32 -1.3 4,475,752 - DDA3937_RS19665 0.34 -0.9
Or see this region's nucleotide sequence