Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17970

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
4,101,444	+		DDA3937_RS17965	0.37	+0.4
4,101,444	+		DDA3937_RS17965	0.37	-0.5
4,101,444	+		DDA3937_RS17965	0.37	-0.1
4,101,444	+		DDA3937_RS17965	0.37	-0.7
4,101,445	-		DDA3937_RS17965	0.37	+0.6
4,101,445	-		DDA3937_RS17965	0.37	+0.4
4,101,445	-		DDA3937_RS17965	0.37	+0.3
4,101,496	+		DDA3937_RS17965	0.40	+1.1
4,101,496	+		DDA3937_RS17965	0.40	-0.9
4,101,496	+		DDA3937_RS17965	0.40	+0.9
4,101,497	-		DDA3937_RS17965	0.40	+1.3
4,101,497	-		DDA3937_RS17965	0.40	+0.9
4,101,497	-		DDA3937_RS17965	0.40	-2.3
4,101,497	-		DDA3937_RS17965	0.40	-0.5
4,101,633	-		DDA3937_RS17965	0.50	-0.4
4,101,648	+		DDA3937_RS17965	0.51	+0.6
4,101,648	+		DDA3937_RS17965	0.51	+0.7
4,101,648	+		DDA3937_RS17965	0.51	+0.8
4,101,649	-		DDA3937_RS17965	0.51	+0.1
4,101,649	-		DDA3937_RS17965	0.51	+0.3
4,101,687	-		DDA3937_RS17965	0.53	-0.5
4,101,687	-		DDA3937_RS17965	0.53	-0.5
4,101,815	+		DDA3937_RS17965	0.62	-2.1
4,101,815	+		DDA3937_RS17965	0.62	+0.1
4,101,815	+		DDA3937_RS17965	0.62	-0.2
4,101,816	-		DDA3937_RS17965	0.62	-0.8
4,101,816	-		DDA3937_RS17965	0.62	+0.2
4,101,893	+		DDA3937_RS17965	0.67	+1.0
4,101,894	-		DDA3937_RS17965	0.68	+0.0
4,101,903	-		DDA3937_RS17965	0.68	-0.4
4,101,903	-		DDA3937_RS17965	0.68	+0.6
4,101,903	-		DDA3937_RS17965	0.68	+0.6
4,101,957	+		DDA3937_RS17965	0.72	+0.3
4,101,977	+		DDA3937_RS17965	0.73	+0.4
4,101,977	+		DDA3937_RS17965	0.73	+3.4
4,101,977	+		DDA3937_RS17965	0.73	-1.2
4,101,977	+		DDA3937_RS17965	0.73	-1.5
4,101,977	+		DDA3937_RS17965	0.73	-0.2
4,101,977	+		DDA3937_RS17965	0.73	-1.5
4,101,977	+		DDA3937_RS17965	0.73	+0.1
4,101,977	+		DDA3937_RS17965	0.73	+1.0
4,101,977	+		DDA3937_RS17965	0.73	+0.7
4,101,978	-		DDA3937_RS17965	0.73	+0.3
4,101,978	-		DDA3937_RS17965	0.73	-0.6
4,101,978	-		DDA3937_RS17965	0.73	+0.6
4,101,978	-		DDA3937_RS17965	0.73	+1.3
4,102,012	+		DDA3937_RS17965	0.76	+0.1
4,102,012	+		DDA3937_RS17965	0.76	-0.9
4,102,012	+		DDA3937_RS17965	0.76	+0.4
4,102,012	+		DDA3937_RS17965	0.76	-1.8
4,102,012	+		DDA3937_RS17965	0.76	-4.3
4,102,012	+		DDA3937_RS17965	0.76	+0.7
4,102,012	+		DDA3937_RS17965	0.76	-0.7
4,102,013	-		DDA3937_RS17965	0.76	-0.4
4,102,013	-		DDA3937_RS17965	0.76	+0.3
4,102,013	-		DDA3937_RS17965	0.76	+1.3
4,102,125	+		DDA3937_RS17965	0.83	+0.9
4,102,128	+		DDA3937_RS17965	0.84	+0.0
4,102,146	+		DDA3937_RS17965	0.85	-0.1
4,102,201	+		DDA3937_RS17965	0.89	+1.1
4,102,201	+		DDA3937_RS17965	0.89	-0.3
4,102,202	-		DDA3937_RS17965	0.89	+0.1
4,102,202	-		DDA3937_RS17965	0.89	-0.6
4,102,362	+				+1.1
4,102,381	+				+0.1
4,102,382	-				+1.2
4,102,392	+				+0.7
4,102,393	-				-0.7
4,102,393	-				-0.8
4,102,393	-				+0.2
4,102,451	+				+1.1
4,102,468	-				-0.2
4,102,468	-				-1.1
4,102,468	-				+0.2
4,102,468	-				+0.9
4,102,468	-				+0.5
4,102,521	+		DDA3937_RS17970	0.12	+0.1
4,102,521	+		DDA3937_RS17970	0.12	+0.9
4,102,521	+		DDA3937_RS17970	0.12	+0.3
4,102,522	-		DDA3937_RS17970	0.12	-0.0
4,102,522	-		DDA3937_RS17970	0.12	+0.2
4,102,522	-		DDA3937_RS17970	0.12	-1.5
4,102,522	-		DDA3937_RS17970	0.12	+1.8
4,102,588	+		DDA3937_RS17970	0.18	+0.4
4,102,588	+		DDA3937_RS17970	0.18	-0.5
4,102,714	+		DDA3937_RS17970	0.28	+0.2
4,102,714	+		DDA3937_RS17970	0.28	-0.9
4,102,714	+		DDA3937_RS17970	0.28	+1.1
4,102,714	+		DDA3937_RS17970	0.28	-0.0
4,102,715	-		DDA3937_RS17970	0.28	-0.5
4,102,715	-		DDA3937_RS17970	0.28	+1.5
4,102,818	+		DDA3937_RS17970	0.37	+0.2
4,102,897	+		DDA3937_RS17970	0.43	+0.4
4,102,897	+		DDA3937_RS17970	0.43	+3.1
4,102,898	-		DDA3937_RS17970	0.43	-1.2
4,102,918	+		DDA3937_RS17970	0.45	-0.1
4,102,919	-		DDA3937_RS17970	0.45	+0.0
4,102,919	-		DDA3937_RS17970	0.45	-1.2
4,102,928	-		DDA3937_RS17970	0.46	+0.5
4,102,928	-		DDA3937_RS17970	0.46	-0.9
4,102,950	+		DDA3937_RS17970	0.48	+0.1
4,102,950	+		DDA3937_RS17970	0.48	+0.6
4,102,950	+		DDA3937_RS17970	0.48	-0.1
4,102,950	+		DDA3937_RS17970	0.48	-0.0
4,102,950	+		DDA3937_RS17970	0.48	+0.3
4,102,950	+		DDA3937_RS17970	0.48	+1.0
4,102,950	+		DDA3937_RS17970	0.48	+1.9
4,102,950	+		DDA3937_RS17970	0.48	-2.2
4,102,951	-		DDA3937_RS17970	0.48	-0.1
4,103,056	+		DDA3937_RS17970	0.57	+1.0
4,103,056	+		DDA3937_RS17970	0.57	-0.6
4,103,056	+		DDA3937_RS17970	0.57	+0.4
4,103,077	+		DDA3937_RS17970	0.58	+0.5
4,103,077	+		DDA3937_RS17970	0.58	-1.3
4,103,077	+		DDA3937_RS17970	0.58	-0.5
4,103,078	-		DDA3937_RS17970	0.58	-0.5
4,103,120	-		DDA3937_RS17970	0.62	-0.5
4,103,132	-		DDA3937_RS17970	0.63	-0.1
4,103,132	-		DDA3937_RS17970	0.63	-0.2
4,103,140	+		DDA3937_RS17970	0.64	+0.9
4,103,141	-		DDA3937_RS17970	0.64	+0.3
4,103,141	-		DDA3937_RS17970	0.64	-0.2
4,103,144	+		DDA3937_RS17970	0.64	+0.0
4,103,144	+		DDA3937_RS17970	0.64	-0.5
4,103,144	+		DDA3937_RS17970	0.64	-0.9
4,103,145	-		DDA3937_RS17970	0.64	-2.2
4,103,145	-		DDA3937_RS17970	0.64	+0.0
4,103,145	-		DDA3937_RS17970	0.64	-1.9
4,103,152	+		DDA3937_RS17970	0.65	+0.2
4,103,152	+		DDA3937_RS17970	0.65	-0.4
4,103,183	+		DDA3937_RS17970	0.67	+0.1
4,103,324	+		DDA3937_RS17970	0.79	+0.4
4,103,325	-		DDA3937_RS17970	0.79	+0.6
4,103,347	-		DDA3937_RS17970	0.81	+0.4
4,103,347	-		DDA3937_RS17970	0.81	+1.0
4,103,431	-		DDA3937_RS17970	0.88	+0.3
4,103,431	-		DDA3937_RS17970	0.88	-0.5
4,103,441	+		DDA3937_RS17970	0.88	-0.2
4,103,488	+				+0.1
4,103,488	+				+0.1
4,103,535	+				+0.0
4,103,535	+				-0.5
4,103,535	+				-0.8
4,103,535	+				+0.3
4,103,535	+				+0.1
4,103,535	+				-0.2
4,103,535	+				+1.9
4,103,535	+				-2.2
4,103,535	+				+0.7
4,103,535	+				+0.1
4,103,536	-				-0.3
4,103,536	-				+0.7
4,103,536	-				+1.6
4,103,536	-				-0.2
4,103,536	-				+2.1
4,103,536	-				+0.3
4,103,593	+				-1.9
4,103,593	+				+0.7
4,103,593	+				-1.0
4,103,593	+				+0.2
4,103,593	+				+0.1
4,103,593	+				+0.9
4,103,593	+				-0.9
4,103,593	+				-0.5
4,103,593	+				+0.2
4,103,594	-				+1.4
4,103,594	-				-1.5
4,103,594	-				+0.2
4,103,594	-				+0.2
4,103,594	-				-0.3
4,103,594	-				-1.5
4,103,594	-				-0.5
4,103,594	-				+0.0
4,103,594	-				-0.7
4,103,595	+				+0.1
4,103,595	+				-0.9
4,103,595	+				+0.6
4,103,595	+				-0.4
4,103,595	+				+1.0
4,103,595	+				-0.6
4,103,595	+				+0.3
4,103,595	+				-0.5
4,103,595	+				+0.1
4,103,595	+				+0.2
4,103,595	+				+0.6
4,103,595	+				-0.6
4,103,595	+				-0.6
4,103,595	+				-0.3
4,103,595	+				+1.1
4,103,595	+				-1.5
4,103,595	+				-1.5
4,103,596	-				-1.3
4,103,596	-				+0.7
4,103,596	-				-2.0
4,103,596	-				+0.7
4,103,596	-				-0.3
4,103,596	-				-0.9
4,103,596	-				+0.8
4,103,596	-				+2.1
4,103,596	-				-0.3
4,103,596	-				+0.2
4,103,596	-				-2.0
4,103,596	-				-1.3
4,103,614	+				+0.9
4,103,614	+				+1.1
4,103,640	+				+0.5
4,103,640	+				-1.3
4,103,641	-				-0.2
4,103,641	-				+0.9
4,103,641	-				+0.5
4,103,682	+				+0.1
4,103,683	-				+1.1
4,103,683	-				-0.9
4,103,683	-				-1.0
4,103,683	-				+0.2
4,103,683	-				+0.7
4,103,683	-				-0.2
4,103,683	-				-1.2
4,103,683	-				-0.2
4,103,683	-				-1.2
4,103,691	+				-0.5
4,103,691	+				-0.0
4,103,691	+				-0.5
4,103,691	+				+1.1
4,103,691	+				+0.1
4,103,691	+				+0.4
4,103,692	-				-1.6
4,103,692	-				-1.2
4,103,692	-				-0.0
4,103,693	+				+0.9
4,103,693	+				+0.3
4,103,693	+				-0.4
4,103,694	-				-0.1
4,103,694	-				+0.3
4,103,694	-				-0.1
4,103,694	-				-0.1
4,103,694	-				+0.6
4,103,694	-				-0.0
4,103,694	-				+0.3
4,103,794	+				+0.1
4,103,794	+				-0.1
4,103,794	+				+0.9
4,103,794	+				+1.5
4,103,794	+				-0.2
4,103,794	+				-1.3
4,103,795	-				-0.5
4,103,795	-				-1.3
4,103,795	-				+1.7
4,103,795	-				-0.2
4,103,795	-				-0.9
4,103,798	+				+0.9
4,103,798	+				-0.2
4,103,798	+				+0.3
4,103,798	+				+1.7
4,103,826	-		DDA3937_RS17975	0.12	-0.5
4,103,868	+		DDA3937_RS17975	0.16	-0.6
4,103,869	-		DDA3937_RS17975	0.16	-0.5
4,103,869	-				-0.9
4,103,877	-		DDA3937_RS17975	0.16	-0.5
4,103,894	-		DDA3937_RS17975	0.18	-1.3
4,103,947	+		DDA3937_RS17975	0.23	-2.6
4,104,080	+		DDA3937_RS17975	0.36	-0.5
4,104,218	+		DDA3937_RS17975	0.49	+0.5
4,104,218	+		DDA3937_RS17975	0.49	-0.1
4,104,219	-		DDA3937_RS17975	0.49	-1.5
4,104,219	-		DDA3937_RS17975	0.49	+0.5
4,104,219	-		DDA3937_RS17975	0.49	+1.2
4,104,219	-		DDA3937_RS17975	0.49	+2.5
4,104,221	+		DDA3937_RS17975	0.49	-0.1
4,104,221	+		DDA3937_RS17975	0.49	+0.0
4,104,221	+		DDA3937_RS17975	0.49	-0.0
4,104,221	+		DDA3937_RS17975	0.49	-0.4
4,104,222	-		DDA3937_RS17975	0.50	-1.0
4,104,222	-		DDA3937_RS17975	0.50	-1.2
4,104,240	+		DDA3937_RS17975	0.51	+0.8
4,104,240	+		DDA3937_RS17975	0.51	+0.2
4,104,240	+		DDA3937_RS17975	0.51	+0.7
4,104,241	-		DDA3937_RS17975	0.51	-0.8
4,104,241	-		DDA3937_RS17975	0.51	-0.0
4,104,241	-		DDA3937_RS17975	0.51	+0.1
4,104,294	-		DDA3937_RS17975	0.56	+0.1
4,104,365	+		DDA3937_RS17975	0.63	+0.8
4,104,365	+		DDA3937_RS17975	0.63	-0.2
4,104,365	+		DDA3937_RS17975	0.63	+0.4
4,104,365	+		DDA3937_RS17975	0.63	-1.2
4,104,366	-		DDA3937_RS17975	0.63	+0.3
4,104,372	-		DDA3937_RS17975	0.64	-1.1
4,104,372	-		DDA3937_RS17975	0.64	-0.6
4,104,476	+		DDA3937_RS17975	0.74	+2.3
4,104,476	+		DDA3937_RS17975	0.74	+0.7
4,104,477	-		DDA3937_RS17975	0.74	-0.3
4,104,477	-		DDA3937_RS17975	0.74	-0.6
4,104,477	-		DDA3937_RS17975	0.74	+0.7
4,104,572	+		DDA3937_RS17975	0.83	-0.7
4,104,572	+		DDA3937_RS17975	0.83	-0.5
4,104,572	+				-0.5
4,104,573	-		DDA3937_RS17975	0.83	-1.0
4,104,573	-		DDA3937_RS17975	0.83	+1.3