Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09760

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
2,202,395	+				+0.7
2,202,395	+				-0.1
2,202,396	-				-0.3
2,202,416	-				-0.2
2,202,426	-				-0.2
2,202,431	+				-1.5
2,202,431	+				+0.1
2,202,432	-				+0.3
2,202,432	-				-0.1
2,202,435	+				-1.2
2,202,435	+				+0.1
2,202,435	+				+0.1
2,202,436	-				-1.3
2,202,436	-				-1.3
2,202,436	-				+0.7
2,202,497	+				+2.1
2,202,497	+				-0.3
2,202,497	+				-0.6
2,202,498	-				-1.9
2,202,498	-				+0.2
2,202,535	+				+0.5
2,202,535	+				-0.2
2,202,536	-				+1.1
2,202,536	-				-0.1
2,202,593	-				+0.1
2,202,643	-				+0.0
2,202,683	+				+0.1
2,202,683	+				+0.2
2,202,683	+				-0.1
2,202,683	+				+0.6
2,202,684	-				-0.2
2,202,684	-				+0.1
2,202,684	-				+1.1
2,202,720	+		DDA3937_RS09755	0.14	+0.1
2,202,720	+		DDA3937_RS09755	0.14	-1.6
2,202,721	-		DDA3937_RS09755	0.14	-0.2
2,202,770	+		DDA3937_RS09755	0.21	+0.7
2,202,770	+		DDA3937_RS09755	0.21	-0.3
2,202,770	+		DDA3937_RS09755	0.21	+0.5
2,202,868	+		DDA3937_RS09755	0.34	+0.7
2,202,890	+		DDA3937_RS09755	0.37	-0.7
2,202,891	-		DDA3937_RS09755	0.37	-0.4
2,202,891	-		DDA3937_RS09755	0.37	-1.1
2,202,921	+		DDA3937_RS09755	0.41	-0.7
2,202,922	-		DDA3937_RS09755	0.42	-0.5
2,202,922	-		DDA3937_RS09755	0.42	+0.6
2,202,925	+		DDA3937_RS09755	0.42	-1.9
2,202,925	+		DDA3937_RS09755	0.42	+0.2
2,202,926	-		DDA3937_RS09755	0.42	+1.1
2,202,926	-		DDA3937_RS09755	0.42	+0.3
2,202,926	-		DDA3937_RS09755	0.42	+0.1
2,202,926	-		DDA3937_RS09755	0.42	+0.1
2,202,982	-		DDA3937_RS09755	0.50	+0.4
2,203,002	+		DDA3937_RS09755	0.53	-0.7
2,203,003	-		DDA3937_RS09755	0.53	+0.4
2,203,003	-		DDA3937_RS09755	0.53	-1.3
2,203,039	+		DDA3937_RS09755	0.58	-0.0
2,203,039	+				-0.3
2,203,039	+		DDA3937_RS09755	0.58	+1.0
2,203,039	+		DDA3937_RS09755	0.58	-1.3
2,203,039	+		DDA3937_RS09755	0.58	-1.7
2,203,040	-		DDA3937_RS09755	0.58	+1.6
2,203,040	-		DDA3937_RS09755	0.58	+0.5
2,203,040	-		DDA3937_RS09755	0.58	-0.3
2,203,040	-		DDA3937_RS09755	0.58	+0.1
2,203,137	+		DDA3937_RS09755	0.71	+0.3
2,203,137	+		DDA3937_RS09755	0.71	+0.0
2,203,137	+		DDA3937_RS09755	0.71	-1.2
2,203,138	-		DDA3937_RS09755	0.71	+0.0
2,203,138	-		DDA3937_RS09755	0.71	+0.3
2,203,138	-		DDA3937_RS09755	0.71	+1.5
2,203,167	+		DDA3937_RS09755	0.75	-0.9
2,203,167	+		DDA3937_RS09755	0.75	+1.2
2,203,167	+		DDA3937_RS09755	0.75	-0.9
2,203,168	-		DDA3937_RS09755	0.75	-0.4
2,203,168	-		DDA3937_RS09755	0.75	+0.7
2,203,186	+		DDA3937_RS09755	0.78	-2.2
2,203,243	+		DDA3937_RS09755	0.86	-0.5
2,203,259	-		DDA3937_RS09755	0.88	-0.6
2,203,371	+				-1.1
2,203,371	+				-1.0
2,203,372	-				-0.6
2,203,372	-				-0.5
2,203,373	+				+2.2
2,203,373	+				-0.0
2,203,373	+				+1.1
2,203,373	+				-0.8
2,203,373	+				-0.7
2,203,374	-				+0.2
2,203,374	-				+0.5
2,203,374	-				+1.1
2,203,374	-				+1.5
2,203,374	-				-2.7
2,203,374	-				-0.6
2,203,374	-				+1.0
2,203,374	-				+0.9
2,203,374	-				-1.5
2,203,374	-				-0.2
2,203,374	-				+0.1
2,203,374	-				+2.0
2,203,375	+				-0.1
2,203,375	+				+0.9
2,203,376	-				+0.4
2,203,376	-				-0.3
2,203,406	-				-1.1
2,203,461	+				-0.0
2,203,461	+				+0.3
2,203,461	+				+0.3
2,203,461	+				+0.4
2,203,462	-				-0.9
2,203,462	-				-0.9
2,203,462	-				+0.1
2,203,462	-				-0.3
2,203,462	-				+0.4
2,203,611	+		DDA3937_RS09760	0.15	-1.1
2,203,611	+		DDA3937_RS09760	0.15	-0.6
2,203,611	+		DDA3937_RS09760	0.15	+0.7
2,203,611	+		DDA3937_RS09760	0.15	-1.5
2,203,611	+		DDA3937_RS09760	0.15	-0.8
2,203,611	+		DDA3937_RS09760	0.15	+0.5
2,203,612	-		DDA3937_RS09760	0.15	+0.9
2,203,612	-		DDA3937_RS09760	0.15	-1.9
2,203,612	-		DDA3937_RS09760	0.15	-2.4
2,203,629	+		DDA3937_RS09760	0.16	+1.7
2,203,651	+		DDA3937_RS09760	0.18	-0.9
2,203,651	+		DDA3937_RS09760	0.18	+1.2
2,203,651	+				+0.9
2,203,652	-		DDA3937_RS09760	0.18	+0.2
2,203,652	-		DDA3937_RS09760	0.18	-0.1
2,203,658	+		DDA3937_RS09760	0.18	+0.9
2,203,658	+		DDA3937_RS09760	0.18	-0.8
2,203,659	-		DDA3937_RS09760	0.18	+1.2
2,203,659	-				+0.7
2,203,674	-		DDA3937_RS09760	0.19	+0.5
2,203,674	-		DDA3937_RS09760	0.19	-0.0
2,203,729	+				-1.7
2,203,730	-		DDA3937_RS09760	0.23	-0.9
2,203,785	+		DDA3937_RS09760	0.26	+1.3
2,203,785	+		DDA3937_RS09760	0.26	-0.9
2,203,785	+		DDA3937_RS09760	0.26	-0.1
2,203,881	+		DDA3937_RS09760	0.32	-0.7
2,203,882	-		DDA3937_RS09760	0.32	+0.4
2,203,882	-		DDA3937_RS09760	0.32	-0.2
2,203,981	-		DDA3937_RS09760	0.38	+0.5
2,204,101	+		DDA3937_RS09760	0.46	-0.3
2,204,101	+		DDA3937_RS09760	0.46	-1.3
2,204,102	-		DDA3937_RS09760	0.46	-0.8
2,204,134	+		DDA3937_RS09760	0.48	+0.1
2,204,149	+		DDA3937_RS09760	0.49	-2.3
2,204,149	+		DDA3937_RS09760	0.49	-1.3
2,204,149	+		DDA3937_RS09760	0.49	-0.3
2,204,149	+		DDA3937_RS09760	0.49	-0.3
2,204,150	-		DDA3937_RS09760	0.49	+0.7
2,204,155	+		DDA3937_RS09760	0.49	+0.8
2,204,304	+		DDA3937_RS09760	0.59	-1.0
2,204,305	-		DDA3937_RS09760	0.59	+0.5
2,204,510	+		DDA3937_RS09760	0.71	-1.6
2,204,510	+		DDA3937_RS09760	0.71	-1.4
2,204,511	-		DDA3937_RS09760	0.71	-0.3
2,204,511	-		DDA3937_RS09760	0.71	-0.1
2,204,567	-		DDA3937_RS09760	0.75	+0.7
2,204,567	-		DDA3937_RS09760	0.75	-0.7
2,204,613	-		DDA3937_RS09760	0.78	-2.1
2,204,674	-		DDA3937_RS09760	0.82	-2.1
2,204,674	-		DDA3937_RS09760	0.82	-0.1
2,204,707	+		DDA3937_RS09760	0.84	+0.7
2,204,708	-		DDA3937_RS09760	0.84	+0.5
2,204,708	-		DDA3937_RS09760	0.84	-1.7
2,204,708	-		DDA3937_RS09760	0.84	-0.2
2,204,731	+		DDA3937_RS09760	0.85	-0.5
2,204,732	-		DDA3937_RS09760	0.85	+0.4
2,204,742	-		DDA3937_RS09760	0.86	-2.1
2,204,742	-		DDA3937_RS09760	0.86	-0.3
2,204,801	-		DDA3937_RS09760	0.90	+0.1
2,204,801	-		DDA3937_RS09760	0.90	+0.7
2,204,801	-				-0.1
2,204,850	+				+0.8
2,204,851	-				-0.7
2,204,877	+				-0.6
2,204,877	+				-1.0
2,204,878	-				-1.5
2,204,878	-				-0.1
2,204,880	+				-0.3
2,204,926	-				+0.7
2,204,926	-				-0.9
2,204,966	-				-0.6
2,204,966	-				+0.3
2,205,007	-				-0.5
2,205,011	+				-2.1
2,205,011	+				-0.4
2,205,025	+				-0.2
2,205,167	-				+0.4
2,205,358	+				-0.8
2,205,358	+				-0.6
2,205,414	+				+0.7
2,205,539	+		DDA3937_RS09765	0.11	-0.5
2,205,540	-		DDA3937_RS09765	0.11	-0.5
2,205,560	+		DDA3937_RS09765	0.12	+0.3
2,205,705	+		DDA3937_RS09765	0.23	+0.3
2,205,705	+		DDA3937_RS09765	0.23	+0.7
2,205,706	-		DDA3937_RS09765	0.23	-0.5
2,205,706	-		DDA3937_RS09765	0.23	-2.2
2,205,706	-		DDA3937_RS09765	0.23	+0.7
2,205,708	+		DDA3937_RS09765	0.23	-0.4
2,205,730	+		DDA3937_RS09765	0.25	-0.7
2,205,740	+		DDA3937_RS09765	0.25	+0.0
2,205,741	-				-2.3
2,205,741	-		DDA3937_RS09765	0.25	-0.3
2,205,741	-		DDA3937_RS09765	0.25	+0.7
2,205,741	-		DDA3937_RS09765	0.25	+2.1
2,205,741	-		DDA3937_RS09765	0.25	+0.3
2,205,746	+		DDA3937_RS09765	0.26	+0.7
2,205,746	+		DDA3937_RS09765	0.26	+1.3
2,205,746	+		DDA3937_RS09765	0.26	+0.6
2,205,746	+		DDA3937_RS09765	0.26	-0.0
2,205,747	-		DDA3937_RS09765	0.26	-0.9
2,205,753	+		DDA3937_RS09765	0.26	+0.3
2,205,775	-				+0.7
2,205,775	-		DDA3937_RS09765	0.28	+0.2
2,205,780	+		DDA3937_RS09765	0.28	-0.3
2,205,780	+		DDA3937_RS09765	0.28	+1.3
2,205,780	+		DDA3937_RS09765	0.28	+1.2
2,205,780	+		DDA3937_RS09765	0.28	-0.9
2,205,781	-		DDA3937_RS09765	0.28	-0.9
2,205,781	-		DDA3937_RS09765	0.28	-0.4
2,205,781	-		DDA3937_RS09765	0.28	-0.8
2,205,781	-		DDA3937_RS09765	0.28	-0.0
2,205,781	-		DDA3937_RS09765	0.28	-1.7
2,205,781	-		DDA3937_RS09765	0.28	+0.0
2,205,781	-		DDA3937_RS09765	0.28	-2.0
2,205,783	-		DDA3937_RS09765	0.29	+0.5
2,205,851	+		DDA3937_RS09765	0.33	+0.2
2,205,864	-		DDA3937_RS09765	0.34	-0.8