Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13945

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
3,167,444	-				+1.0
3,167,444	-				+0.1
3,167,452	-				+0.4
3,167,455	+				+2.6
3,167,455	+				+1.6
3,167,499	-				-0.2
3,167,503	+				-0.8
3,167,503	+				-0.1
3,167,503	+				-0.6
3,167,503	+				+0.6
3,167,503	+				+1.2
3,167,504	-				-0.8
3,167,504	-				+1.0
3,167,504	-				+0.2
3,167,504	-				+0.4
3,167,507	+				+1.1
3,167,508	-				+0.6
3,167,508	-				-1.2
3,167,508	-				-0.6
3,167,603	-		DDA3937_RS13935	0.20	+0.4
3,167,672	+		DDA3937_RS13935	0.36	+0.2
3,167,689	+		DDA3937_RS13935	0.41	+1.3
3,167,690	-		DDA3937_RS13935	0.41	+0.7
3,167,692	+		DDA3937_RS13935	0.41	+1.4
3,167,693	-		DDA3937_RS13935	0.42	-0.0
3,167,693	-		DDA3937_RS13935	0.42	+1.4
3,167,693	-		DDA3937_RS13935	0.42	-1.0
3,167,698	-		DDA3937_RS13935	0.43	-0.8
3,167,791	+		DDA3937_RS13935	0.65	+0.9
3,167,791	+		DDA3937_RS13935	0.65	+0.4
3,167,791	+		DDA3937_RS13935	0.65	-2.0
3,167,791	+		DDA3937_RS13935	0.65	-1.2
3,167,791	+		DDA3937_RS13935	0.65	-0.5
3,167,792	-		DDA3937_RS13935	0.66	+0.6
3,167,792	-		DDA3937_RS13935	0.66	+0.1
3,167,792	-		DDA3937_RS13935	0.66	-0.3
3,167,792	-		DDA3937_RS13935	0.66	+0.9
3,167,792	-		DDA3937_RS13935	0.66	-2.7
3,167,792	-		DDA3937_RS13935	0.66	-1.8
3,167,792	-		DDA3937_RS13935	0.66	-0.6
3,167,792	-		DDA3937_RS13935	0.66	-2.5
3,167,880	+		DDA3937_RS13935	0.87	-0.2
3,167,880	+		DDA3937_RS13935	0.87	+0.8
3,167,881	-		DDA3937_RS13935	0.87	+0.6
3,167,881	-		DDA3937_RS13935	0.87	-1.6
3,167,881	-		DDA3937_RS13935	0.87	+0.0
3,167,944	+				+2.1
3,168,018	+				-0.2
3,168,018	+				-0.0
3,168,019	-				-0.8
3,168,019	-				-0.2
3,168,019	-				+1.4
3,168,022	+				+0.5
3,168,044	+		DDA3937_RS13940	0.12	-0.0
3,168,122	+		DDA3937_RS13940	0.32	-0.1
3,168,126	+		DDA3937_RS13940	0.33	+0.4
3,168,126	+		DDA3937_RS13940	0.33	+0.1
3,168,126	+		DDA3937_RS13940	0.33	-0.8
3,168,127	-		DDA3937_RS13940	0.33	+1.4
3,168,127	-		DDA3937_RS13940	0.33	-0.6
3,168,127	-				+0.5
3,168,127	-		DDA3937_RS13940	0.33	-0.2
3,168,127	-		DDA3937_RS13940	0.33	-0.2
3,168,127	-		DDA3937_RS13940	0.33	+0.5
3,168,127	-		DDA3937_RS13940	0.33	+2.2
3,168,161	+		DDA3937_RS13940	0.42	-0.8
3,168,161	+		DDA3937_RS13940	0.42	+0.6
3,168,161	+		DDA3937_RS13940	0.42	+1.4
3,168,161	+				-0.8
3,168,161	+		DDA3937_RS13940	0.42	-0.2
3,168,162	-		DDA3937_RS13940	0.42	-0.8
3,168,364	+				+1.2
3,168,365	-				-0.2
3,168,365	-				-1.6
3,168,365	-				+4.1
3,168,365	-				+1.8
3,168,365	-				+1.9
3,168,365	-				+0.7
3,168,365	-				+0.1
3,168,388	+				+0.1
3,168,389	-				+0.4
3,168,419	+				+0.8
3,168,420	-				+1.3
3,168,420	-				+1.9
3,168,433	+				-0.4
3,168,433	+				+0.6
3,168,433	+				+0.9
3,168,434	-				+1.5
3,168,434	-				+1.5
3,168,434	-				+2.4
3,168,525	-				+1.4
3,168,525	-				+0.6
3,168,527	-				+1.8
3,168,527	-				+1.7
3,168,545	+		DDA3937_RS13945	0.11	+0.5
3,168,545	+		DDA3937_RS13945	0.11	+0.4
3,168,545	+		DDA3937_RS13945	0.11	+2.3
3,168,545	+		DDA3937_RS13945	0.11	+1.1
3,168,545	+		DDA3937_RS13945	0.11	+2.1
3,168,546	-		DDA3937_RS13945	0.11	+1.0
3,168,546	-		DDA3937_RS13945	0.11	+0.8
3,168,546	-		DDA3937_RS13945	0.11	+2.0
3,168,546	-		DDA3937_RS13945	0.11	+2.1
3,168,546	-		DDA3937_RS13945	0.11	+1.8
3,168,546	-		DDA3937_RS13945	0.11	+1.9
3,168,546	-		DDA3937_RS13945	0.11	+0.5
3,168,644	+		DDA3937_RS13945	0.18	+2.0
3,168,645	-		DDA3937_RS13945	0.18	+2.4
3,168,695	+		DDA3937_RS13945	0.22	+1.3
3,168,696	-		DDA3937_RS13945	0.22	+2.5
3,168,706	+		DDA3937_RS13945	0.23	+1.1
3,168,707	-		DDA3937_RS13945	0.23	+2.1
3,168,707	-		DDA3937_RS13945	0.23	+0.2
3,168,825	+		DDA3937_RS13945	0.32	+0.0
3,168,826	-		DDA3937_RS13945	0.32	+1.3
3,168,878	+		DDA3937_RS13945	0.36	+0.9
3,168,878	+		DDA3937_RS13945	0.36	+0.6
3,168,878	+		DDA3937_RS13945	0.36	-0.4
3,168,878	+		DDA3937_RS13945	0.36	+0.6
3,168,878	+		DDA3937_RS13945	0.36	+1.0
3,168,879	-		DDA3937_RS13945	0.36	+1.8
3,168,879	-		DDA3937_RS13945	0.36	+2.4
3,168,879	-		DDA3937_RS13945	0.36	+0.9
3,168,884	+		DDA3937_RS13945	0.36	+1.8
3,168,885	-		DDA3937_RS13945	0.37	+2.0
3,168,902	-		DDA3937_RS13945	0.38	+2.0
3,168,908	+		DDA3937_RS13945	0.38	+0.8
3,168,909	-		DDA3937_RS13945	0.38	-0.5
3,168,909	-		DDA3937_RS13945	0.38	+1.7
3,168,942	+		DDA3937_RS13945	0.41	+0.0
3,168,942	+		DDA3937_RS13945	0.41	+0.2
3,168,943	-		DDA3937_RS13945	0.41	+0.6
3,168,943	-		DDA3937_RS13945	0.41	+0.6
3,168,957	-		DDA3937_RS13945	0.42	+2.6
3,169,018	+		DDA3937_RS13945	0.47	+1.2
3,169,018	+		DDA3937_RS13945	0.47	+2.3
3,169,019	-		DDA3937_RS13945	0.47	+1.5
3,169,021	+		DDA3937_RS13945	0.47	+0.6
3,169,022	-		DDA3937_RS13945	0.47	+1.8
3,169,054	+		DDA3937_RS13945	0.49	+1.4
3,169,054	+		DDA3937_RS13945	0.49	+0.8
3,169,054	+		DDA3937_RS13945	0.49	-0.3
3,169,054	+		DDA3937_RS13945	0.49	+1.4
3,169,055	-		DDA3937_RS13945	0.49	+1.5
3,169,055	-		DDA3937_RS13945	0.49	+1.1
3,169,055	-		DDA3937_RS13945	0.49	+2.0
3,169,097	+		DDA3937_RS13945	0.53	-0.1
3,169,098	-		DDA3937_RS13945	0.53	+1.8
3,169,153	+		DDA3937_RS13945	0.57	-1.0
3,169,154	-		DDA3937_RS13945	0.57	+1.4
3,169,154	-		DDA3937_RS13945	0.57	+0.6
3,169,309	+		DDA3937_RS13945	0.69	-1.2
3,169,309	+		DDA3937_RS13945	0.69	+0.2
3,169,310	-		DDA3937_RS13945	0.69	+2.6
3,169,370	-		DDA3937_RS13945	0.73	+2.5
3,169,370	-		DDA3937_RS13945	0.73	+1.1
3,169,381	+		DDA3937_RS13945	0.74	+0.2
3,169,382	-				+1.6
3,169,382	-		DDA3937_RS13945	0.74	+1.7
3,169,502	+		DDA3937_RS13945	0.83	-1.2
3,169,502	+		DDA3937_RS13945	0.83	+0.8
3,169,502	+		DDA3937_RS13945	0.83	+0.4
3,169,506	+		DDA3937_RS13945	0.84	+0.9
3,169,506	+		DDA3937_RS13945	0.84	-1.6
3,169,506	+		DDA3937_RS13945	0.84	-1.5
3,169,506	+		DDA3937_RS13945	0.84	-0.2
3,169,507	-				+1.5
3,169,507	-		DDA3937_RS13945	0.84	+1.1
3,169,507	-		DDA3937_RS13945	0.84	+1.0
3,169,507	-		DDA3937_RS13945	0.84	-1.2
3,169,507	-		DDA3937_RS13945	0.84	+0.8
3,169,513	+		DDA3937_RS13945	0.84	+0.8
3,169,513	+		DDA3937_RS13945	0.84	+0.2
3,169,513	+		DDA3937_RS13945	0.84	-0.2
3,169,514	-		DDA3937_RS13945	0.84	+1.5
3,169,517	+		DDA3937_RS13945	0.85	+1.4
3,169,517	+		DDA3937_RS13945	0.85	+0.8
3,169,517	+		DDA3937_RS13945	0.85	-0.5
3,169,517	+		DDA3937_RS13945	0.85	-0.4
3,169,517	+				+2.4
3,169,518	-		DDA3937_RS13945	0.85	+0.8
3,169,518	-		DDA3937_RS13945	0.85	-0.1
3,169,518	-		DDA3937_RS13945	0.85	+0.6
3,169,518	-		DDA3937_RS13945	0.85	-0.2
3,169,535	-		DDA3937_RS13945	0.86	+1.8
3,169,598	+				+1.8
3,169,599	-				-0.6
3,169,602	-				-1.1
3,169,633	+				+0.4
3,169,633	+				-1.4
3,169,652	+				+0.8
3,169,652	+				+0.0
3,169,653	-				-1.0
3,169,653	-				-0.2
3,169,655	-				-0.8
3,169,676	+				+1.8
3,169,677	-				-0.6
3,169,677	-				+0.1
3,169,677	-				-2.2
3,169,677	-				+1.0
3,169,677	-				-0.0
3,169,746	-				+2.1
3,169,752	+				+2.2
3,169,752	+				+1.1
3,169,753	-				+2.4
3,169,753	-				+1.0
3,169,759	-				+0.4
3,169,785	+				+2.7
3,169,785	+				+1.7
3,169,786	-				+1.6
3,169,786	-				+1.6
3,169,831	+		DDA3937_RS22360	0.11	+0.4
3,169,831	+		DDA3937_RS22360	0.11	+1.9
3,169,832	-		DDA3937_RS22360	0.11	+2.0
3,169,832	-		DDA3937_RS22360	0.11	+1.4
3,169,832	-		DDA3937_RS22360	0.11	-0.7
3,169,879	+		DDA3937_RS22360	0.17	-0.8
3,169,887	+		DDA3937_RS22360	0.18	+0.8
3,169,887	+				-2.2
3,169,888	-		DDA3937_RS22360	0.18	+2.5
3,169,888	-		DDA3937_RS22360	0.18	+2.1
3,169,896	+		DDA3937_RS22360	0.19	+1.2
3,169,896	+		DDA3937_RS22360	0.19	+0.9
3,169,908	+				+1.0
3,169,908	+		DDA3937_RS22360	0.20	+2.2
3,169,908	+		DDA3937_RS22360	0.20	+0.8
3,169,909	-		DDA3937_RS22360	0.20	+1.2
3,169,909	-		DDA3937_RS22360	0.20	+2.6
3,169,909	-		DDA3937_RS22360	0.20	+1.8
3,169,909	-		DDA3937_RS22360	0.20	+1.3
3,169,909	-		DDA3937_RS22360	0.20	+2.1
3,169,912	+		DDA3937_RS22360	0.21	+1.6
3,169,913	-		DDA3937_RS22360	0.21	+2.0
3,169,913	-		DDA3937_RS22360	0.21	+2.0
3,169,923	+		DDA3937_RS22360	0.22	+1.4
3,169,923	+		DDA3937_RS22360	0.22	+1.6
3,169,947	+		DDA3937_RS22360	0.25	+1.9
3,169,948	-		DDA3937_RS22360	0.25	+0.6
3,169,955	-		DDA3937_RS22360	0.25	+1.8
3,170,015	+		DDA3937_RS22360	0.32	+1.7
3,170,028	-		DDA3937_RS22360	0.34	-0.3
3,170,072	+		DDA3937_RS22360	0.39	+1.8
3,170,075	+		DDA3937_RS22360	0.39	+1.5
3,170,075	+		DDA3937_RS22360	0.39	+1.4
3,170,075	+		DDA3937_RS22360	0.39	+1.8
3,170,075	+		DDA3937_RS22360	0.39	+1.2
3,170,075	+		DDA3937_RS22360	0.39	+0.6
3,170,076	-		DDA3937_RS22360	0.39	+1.2
3,170,087	-		DDA3937_RS22360	0.41	+2.3
3,170,149	+		DDA3937_RS22360	0.48	+2.4
3,170,149	+		DDA3937_RS22360	0.48	+0.6
3,170,150	-		DDA3937_RS22360	0.48	+2.1
3,170,153	+		DDA3937_RS22360	0.48	+2.5
3,170,153	+		DDA3937_RS22360	0.48	+0.6
3,170,153	+		DDA3937_RS22360	0.48	-0.4
3,170,153	+		DDA3937_RS22360	0.48	+1.7
3,170,153	+		DDA3937_RS22360	0.48	+0.2
3,170,153	+		DDA3937_RS22360	0.48	+2.2
3,170,153	+		DDA3937_RS22360	0.48	+1.8
3,170,154	-		DDA3937_RS22360	0.48	+0.9
3,170,154	-		DDA3937_RS22360	0.48	+1.6
3,170,154	-		DDA3937_RS22360	0.48	+0.8
3,170,154	-		DDA3937_RS22360	0.48	+1.6
3,170,154	-		DDA3937_RS22360	0.48	+0.4
3,170,254	+		DDA3937_RS22360	0.60	+1.9
3,170,254	+		DDA3937_RS22360	0.60	+2.5
3,170,257	-		DDA3937_RS22360	0.60	+2.0
3,170,303	-		DDA3937_RS22360	0.65	+1.8
3,170,304	+		DDA3937_RS22360	0.65	+1.6
3,170,304	+		DDA3937_RS22360	0.65	+1.8
3,170,304	+		DDA3937_RS22360	0.65	-0.2
3,170,304	+		DDA3937_RS22360	0.65	+1.5
3,170,304	+		DDA3937_RS22360	0.65	-0.1
3,170,304	+		DDA3937_RS22360	0.65	+1.2
3,170,304	+		DDA3937_RS22360	0.65	+2.9
3,170,304	+		DDA3937_RS22360	0.65	+1.0
3,170,304	+		DDA3937_RS22360	0.65	+5.1
3,170,305	-		DDA3937_RS22360	0.66	+1.0
3,170,305	-		DDA3937_RS22360	0.66	+1.7
3,170,305	-		DDA3937_RS22360	0.66	+1.2
3,170,305	-		DDA3937_RS22360	0.66	+1.8
3,170,305	-		DDA3937_RS22360	0.66	+1.4
3,170,305	-		DDA3937_RS22360	0.66	+3.1
3,170,305	-		DDA3937_RS22360	0.66	+2.6
3,170,305	-		DDA3937_RS22360	0.66	-0.8
3,170,305	-		DDA3937_RS22360	0.66	-0.4
3,170,305	-		DDA3937_RS22360	0.66	+1.6
3,170,305	-		DDA3937_RS22360	0.66	+1.9
3,170,305	-		DDA3937_RS22360	0.66	+1.5
3,170,329	+		DDA3937_RS22360	0.68	+1.8
3,170,329	+		DDA3937_RS22360	0.68	+1.6
3,170,339	-		DDA3937_RS22360	0.69	+2.7
3,170,348	+		DDA3937_RS22360	0.70	+2.3
3,170,348	+		DDA3937_RS22360	0.70	+0.8
3,170,349	-		DDA3937_RS22360	0.71	+2.2
3,170,349	-		DDA3937_RS22360	0.71	+0.6
3,170,455	+		DDA3937_RS22360	0.83	+2.0
3,170,455	+		DDA3937_RS22360	0.83	+1.7
3,170,462	+		DDA3937_RS22360	0.84	+0.2
3,170,462	+		DDA3937_RS22360	0.84	+2.1
3,170,470	+		DDA3937_RS22360	0.84	+0.2
3,170,470	+		DDA3937_RS22360	0.84	+1.1
3,170,470	+		DDA3937_RS22360	0.84	+0.8
3,170,487	+		DDA3937_RS22360	0.86	+1.9
3,170,507	-		DDA3937_RS22360	0.89	+1.7
3,170,507	-		DDA3937_RS22360	0.89	+1.3
3,170,519	+				+2.8
3,170,519	+				+2.3
3,170,520	-				-2.9
3,170,520	-				+1.1
3,170,563	-				+1.9
3,170,572	+				+1.7
3,170,572	+				+1.6
3,170,572	+				+2.2
3,170,573	-				+2.2
3,170,582	+				+1.8
3,170,599	+				+1.1
3,170,621	+				-1.5
3,170,621	+				+0.2
3,170,622	-				-0.7
3,170,688	+		DDA3937_RS23265	0.14	+0.0