Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09400

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
2,118,547	+				-1.0
2,118,548	-				+0.5
2,118,604	+		DDA3937_RS09395	0.19	+0.2
2,118,773	+		DDA3937_RS09395	0.46	+0.3
2,118,785	+		DDA3937_RS09395	0.48	+0.1
2,118,785	+		DDA3937_RS09395	0.48	-0.5
2,118,785	+		DDA3937_RS09395	0.48	+0.0
2,118,786	-		DDA3937_RS09395	0.48	-1.2
2,118,788	-		DDA3937_RS09395	0.48	+0.6
2,118,788	-		DDA3937_RS09395	0.48	-0.0
2,118,788	-		DDA3937_RS09395	0.48	-0.1
2,118,788	-		DDA3937_RS09395	0.48	+0.9
2,118,840	+		DDA3937_RS09395	0.57	+0.4
2,118,841	-		DDA3937_RS09395	0.57	+0.2
2,118,860	-		DDA3937_RS09395	0.60	-1.0
2,118,860	-		DDA3937_RS09395	0.60	+0.1
2,118,860	-		DDA3937_RS09395	0.60	+1.8
2,118,922	-		DDA3937_RS09395	0.70	+0.1
2,118,977	-		DDA3937_RS09395	0.79	+0.2
2,119,099	-				-0.0
2,119,133	+				-0.0
2,119,192	+				-1.5
2,119,197	-				-0.1
2,119,197	-				-1.2
2,119,211	-				+0.3
2,119,224	+				-3.0
2,119,230	+				-1.7
2,119,231	-				-0.4
2,119,231	-				+0.5
2,119,231	-				+0.6
2,119,233	-				+0.6
2,119,233	-				+0.6
2,119,233	-				+0.5
2,119,254	+				-0.8
2,119,278	-				-0.4
2,119,311	+				+0.6
2,119,317	+				+0.8
2,119,317	+				-0.1
2,119,319	+				-0.3
2,119,349	+				+0.5
2,119,361	+				+0.9
2,119,372	+				-1.7
2,119,391	+				+0.5
2,119,391	+				+0.2
2,119,391	+				+1.0
2,119,391	+				-0.1
2,119,391	+				+1.4
2,119,391	+				+1.1
2,119,391	+				-1.7
2,119,391	+				+1.0
2,119,391	+				+0.2
2,119,391	+				-2.0
2,119,391	+				-2.3
2,119,391	+				-0.8
2,119,391	+				-1.5
2,119,391	+				-0.2
2,119,391	+				+0.6
2,119,391	+				-2.4
2,119,391	+				+0.4
2,119,392	-				-0.0
2,119,392	-				+0.4
2,119,392	-				-1.1
2,119,392	-				+0.9
2,119,392	-				+0.1
2,119,392	-				+0.9
2,119,392	-				+0.5
2,119,392	-				-0.2
2,119,392	-				-1.5
2,119,392	-				-0.6
2,119,392	-				+0.4
2,119,392	-				-0.4
2,119,392	-				-0.8
2,119,392	-				+0.1
2,119,392	-				-1.7
2,119,392	-				-0.5
2,119,392	-				-0.7
2,119,392	-				-1.5
2,119,392	-				+0.3
2,119,392	-				-0.1
2,119,392	-				+0.7
2,119,392	-				-3.0
2,119,392	-				-0.2
2,119,392	-				-1.1
2,119,392	-				-0.2
2,119,393	+				-0.5
2,119,393	+				-0.2
2,119,393	+				+1.7
2,119,394	-				-2.5
2,119,394	-				-0.6
2,119,394	-				+0.3
2,119,394	-				+0.3
2,119,394	-				-2.2
2,119,394	-				+0.2
2,119,397	+				-0.2
2,119,397	+				-0.7
2,119,397	+				-0.4
2,119,397	+				-0.1
2,119,398	-				+1.4
2,119,398	-				+0.6
2,119,398	-				-1.4
2,119,398	-				+1.4
2,119,402	+				+0.2
2,119,415	+				-0.6
2,119,415	+				+0.2
2,119,415	+				+0.3
2,119,416	-				-0.9
2,119,416	-				+1.0
2,119,433	+				-0.4
2,119,433	+				+0.0
2,119,441	+				-0.4
2,119,441	+				-0.7
2,119,441	+				-0.2
2,119,441	+				+0.3
2,119,442	-				-2.4
2,119,523	+		DDA3937_RS09400	0.11	+0.8
2,119,524	-		DDA3937_RS09400	0.11	-2.0
2,119,524	-		DDA3937_RS09400	0.11	-1.0
2,119,524	-		DDA3937_RS09400	0.11	-0.0
2,119,524	-		DDA3937_RS09400	0.11	-0.6
2,119,526	+		DDA3937_RS09400	0.11	-1.0
2,119,527	-		DDA3937_RS09400	0.11	-0.2
2,119,527	-		DDA3937_RS09400	0.11	+2.5
2,119,531	+		DDA3937_RS09400	0.11	+0.5
2,119,531	+		DDA3937_RS09400	0.11	-0.0
2,119,531	+		DDA3937_RS09400	0.11	+1.2
2,119,532	-		DDA3937_RS09400	0.12	-1.1
2,119,569	-		DDA3937_RS09400	0.16	+0.4
2,119,605	+		DDA3937_RS09400	0.20	-2.1
2,119,635	+		DDA3937_RS09400	0.24	+0.4
2,119,636	-		DDA3937_RS09400	0.24	-3.2
2,119,661	+		DDA3937_RS09400	0.27	-0.1
2,119,671	-		DDA3937_RS09400	0.28	-1.0
2,119,694	+		DDA3937_RS09400	0.31	-1.8
2,119,694	+		DDA3937_RS09400	0.31	+0.2
2,119,694	+		DDA3937_RS09400	0.31	-3.1
2,119,695	-		DDA3937_RS09400	0.31	-0.8
2,119,695	-				-2.2
2,119,702	-		DDA3937_RS09400	0.32	-0.6
2,119,702	-		DDA3937_RS09400	0.32	-0.6
2,119,779	+		DDA3937_RS09400	0.41	-0.5
2,119,779	+		DDA3937_RS09400	0.41	+0.5
2,119,779	+		DDA3937_RS09400	0.41	+0.1
2,119,779	+		DDA3937_RS09400	0.41	+0.5
2,119,780	-		DDA3937_RS09400	0.41	+0.0
2,119,780	-		DDA3937_RS09400	0.41	-0.7
2,119,780	-		DDA3937_RS09400	0.41	-2.5
2,119,787	+		DDA3937_RS09400	0.42	+0.3
2,120,000	+		DDA3937_RS09400	0.67	+0.6
2,120,162	+		DDA3937_RS09400	0.86	+0.4
2,120,187	+		DDA3937_RS09400	0.89	+0.5
2,120,201	+				+0.2
2,120,329	-				+0.4
2,120,364	-				+0.2
2,120,438	-				-0.6
2,120,452	+				+0.8
2,120,564	+		DDA3937_RS09405	0.13	-0.1
2,120,564	+		DDA3937_RS09405	0.13	-2.0
2,120,565	-		DDA3937_RS09405	0.14	-0.5
2,120,579	+		DDA3937_RS09405	0.15	+0.2
2,120,579	+		DDA3937_RS09405	0.15	-1.8
2,120,580	-		DDA3937_RS09405	0.15	-0.5
2,120,580	-		DDA3937_RS09405	0.15	+0.1
2,120,582	+		DDA3937_RS09405	0.15	-0.1
2,120,582	+		DDA3937_RS09405	0.15	+0.6
2,120,582	+		DDA3937_RS09405	0.15	+0.5
2,120,582	+		DDA3937_RS09405	0.15	+0.6
2,120,583	-		DDA3937_RS09405	0.15	-2.4
2,120,583	-		DDA3937_RS09405	0.15	+0.5
2,120,583	-		DDA3937_RS09405	0.15	-0.7
2,120,583	-		DDA3937_RS09405	0.15	-1.7
2,120,583	-		DDA3937_RS09405	0.15	+0.9
2,120,583	-		DDA3937_RS09405	0.15	+0.2
2,120,583	-		DDA3937_RS09405	0.15	-0.3
2,120,588	-		DDA3937_RS09405	0.16	+0.1
2,120,588	-		DDA3937_RS09405	0.16	-0.1
2,121,110	+		DDA3937_RS09405	0.67	+0.0