Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12270

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
2,786,410	+		DDA3937_RS12260	0.86	+0.1
2,786,653	+				-1.3
2,786,654	-				-0.4
2,786,672	+				+0.2
2,786,673	-				+0.6
2,786,706	+		DDA3937_RS12265	0.14	-0.3
2,786,707	-		DDA3937_RS12265	0.14	+1.0
2,786,995	+		DDA3937_RS12265	0.55	+0.5
2,786,996	-		DDA3937_RS12265	0.55	+0.4
2,787,004	+		DDA3937_RS12265	0.57	-1.4
2,787,005	-		DDA3937_RS12265	0.57	+1.5
2,787,015	+		DDA3937_RS12265	0.58	+1.0
2,787,016	-		DDA3937_RS12265	0.58	+0.2
2,787,082	+		DDA3937_RS12265	0.68	-1.4
2,787,120	-		DDA3937_RS12265	0.73	-0.4
2,787,122	+		DDA3937_RS12265	0.74	+2.2
2,787,122	+		DDA3937_RS12265	0.74	-0.4
2,787,123	-		DDA3937_RS12265	0.74	+1.4
2,787,167	-		DDA3937_RS12265	0.80	+0.4
2,787,197	+		DDA3937_RS12265	0.84	-0.1
2,787,282	+				-0.4
2,787,283	-				+0.2
2,787,283	-				+0.0
2,787,283	-				+1.2
2,787,292	+				+1.1
2,787,292	+				+0.2
2,787,292	+				-1.8
2,787,360	+				-0.8
2,787,360	+				+0.8
2,787,360	+				+0.3
2,787,360	+				-0.4
2,787,361	-				+0.6
2,787,361	-				-1.6
2,787,361	-				+0.2
2,787,361	-				+1.3
2,787,361	-				+0.2
2,787,361	-				+0.6
2,787,363	+				-1.4
2,787,363	+				+0.6
2,787,364	-				+0.6
2,787,364	-				+0.6
2,787,391	+				+0.1
2,787,486	-				-0.6
2,787,486	-				+1.4
2,787,675	-				-0.6
2,787,821	-		DDA3937_RS12270	0.11	-0.9
2,787,821	-		DDA3937_RS12270	0.11	-0.6
2,787,829	+		DDA3937_RS12270	0.11	-0.7
2,788,004	+		DDA3937_RS12270	0.15	-0.9
2,788,017	-		DDA3937_RS12270	0.16	+0.1
2,788,038	+		DDA3937_RS12270	0.16	-1.1
2,788,039	-		DDA3937_RS12270	0.16	-1.2
2,788,058	+		DDA3937_RS12270	0.17	+0.6
2,788,058	+		DDA3937_RS12270	0.17	+0.9
2,788,058	+		DDA3937_RS12270	0.17	+0.9
2,788,202	+		DDA3937_RS12270	0.20	-2.2
2,788,224	-		DDA3937_RS12270	0.21	+0.1
2,788,254	+		DDA3937_RS12270	0.22	-0.9
2,788,255	-		DDA3937_RS12270	0.22	+0.2
2,788,538	+		DDA3937_RS12270	0.29	-0.5
2,788,539	-		DDA3937_RS12270	0.29	-0.2
2,788,652	-		DDA3937_RS12270	0.32	+2.1
2,788,721	+		DDA3937_RS12270	0.34	-0.4
2,788,721	+				-0.5
2,788,722	-		DDA3937_RS12270	0.34	-0.0
2,788,722	-		DDA3937_RS12270	0.34	+1.0
2,788,722	-		DDA3937_RS12270	0.34	-2.2
2,788,914	-		DDA3937_RS12270	0.39	-2.4
2,789,099	+		DDA3937_RS12270	0.44	-2.4
2,789,100	-		DDA3937_RS12270	0.44	-0.9
2,789,100	-		DDA3937_RS12270	0.44	-1.7
2,789,100	-		DDA3937_RS12270	0.44	+1.1
2,789,135	+		DDA3937_RS12270	0.44	-0.3
2,789,136	-		DDA3937_RS12270	0.44	+0.1
2,789,198	+		DDA3937_RS12270	0.46	-0.9
2,789,516	+		DDA3937_RS12270	0.54	-0.2
2,789,516	+		DDA3937_RS12270	0.54	-0.4
2,789,517	-		DDA3937_RS12270	0.54	-0.4
2,789,520	+		DDA3937_RS12270	0.54	-0.3
2,789,521	-		DDA3937_RS12270	0.54	-1.8
2,789,546	+		DDA3937_RS12270	0.55	-0.8
2,789,546	+		DDA3937_RS12270	0.55	+1.1
2,789,546	+		DDA3937_RS12270	0.55	+1.6
2,789,546	+		DDA3937_RS12270	0.55	+0.6
2,789,546	+		DDA3937_RS12270	0.55	-1.9
2,789,547	-		DDA3937_RS12270	0.55	-0.4
2,789,547	-		DDA3937_RS12270	0.55	+0.4
2,789,555	+		DDA3937_RS12270	0.55	+0.9
2,789,923	-		DDA3937_RS12270	0.65	-1.7
2,790,071	+		DDA3937_RS12270	0.69	-0.2
2,790,072	-				-1.2
2,790,180	-		DDA3937_RS12270	0.71	+1.1
2,790,186	-		DDA3937_RS12270	0.72	-1.0
2,790,221	+		DDA3937_RS12270	0.72	+0.5
2,790,221	+		DDA3937_RS12270	0.72	-0.9
2,790,256	+		DDA3937_RS12270	0.73	-0.1
2,790,335	+		DDA3937_RS12270	0.75	+0.1
2,790,335	+		DDA3937_RS12270	0.75	-0.2
2,790,421	+		DDA3937_RS12270	0.78	+1.0
2,790,421	+		DDA3937_RS12270	0.78	-1.0
2,790,421	+		DDA3937_RS12270	0.78	+0.6
2,790,582	+		DDA3937_RS12270	0.82	+0.6
2,790,582	+		DDA3937_RS12270	0.82	-1.1
2,790,624	+		DDA3937_RS12270	0.83	-2.1
2,790,624	+		DDA3937_RS12270	0.83	-1.5
2,790,625	-		DDA3937_RS12270	0.83	+0.8
2,790,625	-		DDA3937_RS12270	0.83	-0.6
2,790,658	+		DDA3937_RS12270	0.84	+0.9
2,790,658	+		DDA3937_RS12270	0.84	+0.6
2,790,658	+		DDA3937_RS12270	0.84	-0.4
2,790,659	-		DDA3937_RS12270	0.84	+0.9
2,790,659	-		DDA3937_RS12270	0.84	+1.4
2,790,681	+		DDA3937_RS12270	0.84	-1.7
2,790,734	+		DDA3937_RS12270	0.86	-0.5
2,790,735	-		DDA3937_RS12270	0.86	-1.6
2,790,735	-		DDA3937_RS12270	0.86	+1.0
2,790,735	-		DDA3937_RS12270	0.86	+0.4
2,790,825	+		DDA3937_RS12270	0.88	-0.3
2,790,826	-		DDA3937_RS12270	0.88	-0.3
2,790,839	+		DDA3937_RS12270	0.88	-0.0
2,790,840	-		DDA3937_RS12270	0.88	+0.9
2,790,840	-		DDA3937_RS12270	0.88	-0.4
2,790,925	-				-0.1
2,791,093	+				-0.4
2,791,093	+				-0.1
2,791,250	-				+0.9
2,791,365	+				+0.2
2,791,365	+				-0.5
2,791,366	-				-1.5
2,791,377	-				+0.4
2,791,377	-				+0.2
2,791,388	-				+1.1
2,791,388	-				+1.6
2,791,388	-				-1.9
2,791,388	-				+0.9
2,791,398	+				-0.7
2,791,407	-				-2.3
2,791,417	+				+0.5
2,791,417	+				+0.0
2,791,417	+				-1.7
2,791,417	+				+0.2
2,791,417	+				-0.4
2,791,417	+				-1.5
2,791,418	-				-0.5
2,791,418	-				-0.8
2,791,418	-				+1.1
2,791,418	-				+0.2
2,791,418	-				-1.5
2,791,418	-				+0.1
2,791,424	+				-0.3
2,791,424	+				-0.0
2,791,435	+				+0.6
2,791,435	+				-1.4
2,791,436	-				-0.5
2,791,436	-				-1.1
2,791,444	-				+0.1
2,791,461	-				-1.9
2,791,461	-				-0.1
2,791,461	-				+0.4
2,791,461	-				+0.1
2,791,461	-				+0.1
2,791,481	+				-0.9
2,791,481	+				-0.0
2,791,483	+				-0.4
2,791,484	-				+1.2
2,791,538	+				+1.0
2,791,562	+				+0.7
2,791,563	-				+0.1
2,791,565	+				-1.2
2,791,565	+				-0.0
2,791,566	-				-1.7
2,791,566	-				-0.2
2,791,566	-				-0.1
2,791,636	+				-0.7
2,791,636	+				+0.4
2,791,637	-				+0.3
2,791,662	+				+1.4
2,791,662	+				-0.0
2,791,663	-				+1.2
2,791,681	+				-2.7
2,791,681	-				-2.8
2,791,940	+		DDA3937_RS12275	0.48	-0.4
2,791,941	-		DDA3937_RS12275	0.48	+1.1
2,791,941	-		DDA3937_RS12275	0.48	-2.2
2,791,941	-		DDA3937_RS12275	0.48	+0.4
2,791,973	+		DDA3937_RS12275	0.53	+1.0
2,791,973	+		DDA3937_RS12275	0.53	-1.6
2,791,973	+		DDA3937_RS12275	0.53	+0.6
2,791,973	+		DDA3937_RS12275	0.53	+0.6
2,791,973	+		DDA3937_RS12275	0.53	-1.4
2,791,973	+		DDA3937_RS12275	0.53	+0.3
2,791,974	-		DDA3937_RS12275	0.53	+0.6
2,792,117	+		DDA3937_RS12275	0.77	+0.7
2,792,117	+		DDA3937_RS12275	0.77	+0.1
2,792,117	+		DDA3937_RS12275	0.77	-1.4
2,792,117	+		DDA3937_RS12275	0.77	+0.6
2,792,118	-		DDA3937_RS12275	0.77	-0.9
2,792,225	-				-1.9
2,792,262	+				+0.6