Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16760

Experiment: M9+glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose
3,811,582	-		DDA3937_RS16750	0.75	+0.4
3,811,600	+		DDA3937_RS16750	0.80	-0.4
3,811,601	-		DDA3937_RS16750	0.80	-1.8
3,811,601	-		DDA3937_RS16750	0.80	-2.1
3,811,601	-		DDA3937_RS16750	0.80	+1.0
3,811,604	-		DDA3937_RS16750	0.81	-3.2
3,811,604	-		DDA3937_RS16750	0.81	-0.5
3,811,630	-		DDA3937_RS16750	0.89	-1.1
3,811,636	+				+1.1
3,811,636	+				+0.7
3,811,636	+				+2.4
3,811,636	+				+0.5
3,811,637	-				-0.7
3,811,637	-				-0.4
3,811,637	-				-0.7
3,811,639	+				+0.8
3,811,639	+				+0.2
3,811,640	-				-1.0
3,811,640	-				-0.3
3,811,640	-				-1.3
3,811,640	-				-0.5
3,811,640	-				-1.5
3,811,643	+				+1.1
3,811,643	+				-0.8
3,811,643	+				-0.2
3,811,643	+				-0.4
3,811,644	-				-2.3
3,811,644	-				-1.2
3,811,644	-				-1.8
3,811,644	-				-0.6
3,811,672	-				-2.9
3,811,672	-				-1.6
3,811,672	-				+0.1
3,811,707	+				+0.9
3,811,708	-				-1.0
3,811,708	-				-0.3
3,811,708	-				-0.0
3,811,738	-				-3.1
3,811,738	-				-0.6
3,811,758	-				-1.0
3,811,758	-				-1.9
3,811,758	-				+1.0
3,811,764	+				-0.0
3,811,787	-				-2.2
3,811,790	+				-0.9
3,811,795	-				-1.4
3,811,810	+				-0.5
3,811,810	+				-1.5
3,811,880	+				-1.4
3,811,880	+				-3.2
3,811,881	-				-1.8
3,811,946	+		DDA3937_RS16755	0.20	-2.3
3,811,946	+		DDA3937_RS16755	0.20	+0.0
3,811,946	+		DDA3937_RS16755	0.20	-2.5
3,811,946	+		DDA3937_RS16755	0.20	-0.8
3,811,946	+		DDA3937_RS16755	0.20	-2.3
3,811,947	-		DDA3937_RS16755	0.20	-4.2
3,811,947	-		DDA3937_RS16755	0.20	-2.7
3,811,947	-		DDA3937_RS16755	0.20	-2.3
3,811,979	+		DDA3937_RS16755	0.27	-1.6
3,811,979	+		DDA3937_RS16755	0.27	+0.9
3,811,979	+		DDA3937_RS16755	0.27	-3.0
3,811,980	-		DDA3937_RS16755	0.27	-2.6
3,812,027	+		DDA3937_RS16755	0.36	-2.7
3,812,182	-		DDA3937_RS16755	0.66	-2.0
3,812,187	+		DDA3937_RS16755	0.67	-2.6
3,812,187	+		DDA3937_RS16755	0.67	-2.0
3,812,187	+		DDA3937_RS16755	0.67	-2.6
3,812,187	+		DDA3937_RS16755	0.67	-2.5
3,812,187	+		DDA3937_RS16755	0.67	-0.8
3,812,187	+		DDA3937_RS16755	0.67	+0.0
3,812,187	+		DDA3937_RS16755	0.67	-1.9
3,812,188	-		DDA3937_RS16755	0.67	-1.6
3,812,188	-		DDA3937_RS16755	0.67	-1.2
3,812,188	-		DDA3937_RS16755	0.67	-2.3
3,812,188	-		DDA3937_RS16755	0.67	-1.3
3,812,188	-		DDA3937_RS16755	0.67	-1.0
3,812,188	-		DDA3937_RS16755	0.67	-2.9
3,812,188	-		DDA3937_RS16755	0.67	-2.5
3,812,252	+		DDA3937_RS16755	0.80	-1.4
3,812,352	+				-0.7
3,812,352	+				-0.3
3,812,353	-				-2.5
3,812,409	+				+0.0
3,812,410	-				-0.3
3,812,410	-				-0.6
3,812,410	-				-3.2
3,812,420	+				-0.9
3,812,421	-				-1.6
3,812,514	-				+1.0
3,812,564	+				+1.0
3,812,564	+				-1.8
3,812,564	+				+0.3
3,812,564	+				-0.4
3,812,564	+				-1.0
3,812,564	+				-0.2
3,812,564	+				-1.0
3,812,565	-				-1.6
3,812,565	-				-2.5
3,812,565	-				-2.0
3,812,653	-		DDA3937_RS16760	0.11	-1.5
3,812,658	+		DDA3937_RS16760	0.11	+1.3
3,812,658	+		DDA3937_RS16760	0.11	+1.0
3,812,658	+		DDA3937_RS16760	0.11	+0.2
3,812,659	-		DDA3937_RS16760	0.11	-0.5
3,812,659	-		DDA3937_RS16760	0.11	-0.3
3,812,659	-		DDA3937_RS16760	0.11	-2.0
3,812,697	+		DDA3937_RS16760	0.14	-1.5
3,812,697	+		DDA3937_RS16760	0.14	+1.0
3,812,697	+		DDA3937_RS16760	0.14	-1.1
3,812,697	+		DDA3937_RS16760	0.14	-0.0
3,812,698	-		DDA3937_RS16760	0.14	-0.4
3,812,698	-		DDA3937_RS16760	0.14	-0.3
3,812,723	+		DDA3937_RS16760	0.16	+0.1
3,812,723	+		DDA3937_RS16760	0.16	+0.2
3,812,724	-		DDA3937_RS16760	0.17	-0.3
3,812,724	-		DDA3937_RS16760	0.17	-1.0
3,812,724	-		DDA3937_RS16760	0.17	-0.3
3,812,781	-		DDA3937_RS16760	0.21	-2.3
3,812,904	+		DDA3937_RS16760	0.32	-1.3
3,812,904	+		DDA3937_RS16760	0.32	+0.3
3,813,072	+		DDA3937_RS16760	0.46	-0.6
3,813,072	+		DDA3937_RS16760	0.46	-1.8
3,813,072	+		DDA3937_RS16760	0.46	-0.9
3,813,073	-		DDA3937_RS16760	0.46	+0.2
3,813,101	+		DDA3937_RS16760	0.49	-0.5
3,813,140	+		DDA3937_RS16760	0.52	-1.4
3,813,141	-		DDA3937_RS16760	0.52	-1.6
3,813,176	+		DDA3937_RS16760	0.55	-0.3
3,813,177	-		DDA3937_RS16760	0.55	-0.7
3,813,177	-		DDA3937_RS16760	0.55	-1.5
3,813,177	-		DDA3937_RS16760	0.55	+0.0
3,813,182	+		DDA3937_RS16760	0.56	-1.3
3,813,204	+		DDA3937_RS16760	0.57	+0.3
3,813,204	+		DDA3937_RS16760	0.57	+0.7
3,813,204	+		DDA3937_RS16760	0.57	-1.3
3,813,204	+		DDA3937_RS16760	0.57	-1.0
3,813,204	+		DDA3937_RS16760	0.57	-1.8
3,813,205	-		DDA3937_RS16760	0.57	+0.5
3,813,205	-		DDA3937_RS16760	0.57	+0.7
3,813,205	-		DDA3937_RS16760	0.57	-0.4
3,813,205	-		DDA3937_RS16760	0.57	-0.5
3,813,205	-		DDA3937_RS16760	0.57	-2.3
3,813,230	-		DDA3937_RS16760	0.60	-0.3
3,813,306	-		DDA3937_RS16760	0.66	+0.2
3,813,306	-		DDA3937_RS16760	0.66	-0.6
3,813,366	+		DDA3937_RS16760	0.71	-0.3
3,813,366	+		DDA3937_RS16760	0.71	-0.1
3,813,367	-				+0.3
3,813,384	+		DDA3937_RS16760	0.73	-0.2
3,813,385	-		DDA3937_RS16760	0.73	-0.7
3,813,400	+		DDA3937_RS16760	0.74	-1.0
3,813,401	-		DDA3937_RS16760	0.74	-0.7
3,813,497	+		DDA3937_RS16760	0.82	-0.8
3,813,498	-		DDA3937_RS16760	0.82	-2.0
3,813,498	-		DDA3937_RS16760	0.82	+0.0
3,813,498	-		DDA3937_RS16760	0.82	-1.0
3,813,498	-		DDA3937_RS16760	0.82	-1.3
3,813,498	-		DDA3937_RS16760	0.82	+0.7
3,813,498	-		DDA3937_RS16760	0.82	-2.0
3,813,561	-				-2.5
3,813,822	+				+0.3
3,813,822	+				-1.0
3,813,822	+				-1.6
3,813,822	+				-2.5
3,813,822	+				-1.4
3,813,822	+				-2.0
3,813,822	+				+1.0
3,813,823	-				-1.1
3,813,823	-				-0.6
3,813,823	-				-1.6
3,813,823	-				+0.1
3,813,823	-				+0.3
3,813,823	-				+2.0
3,813,823	-				-0.8
3,813,823	-				+2.0
3,813,823	-				-1.7
3,813,823	-				+0.1
3,813,823	-				+0.4
3,813,823	-				+0.0
3,813,823	-				-1.6
3,813,823	-				-1.2
3,813,823	-				-0.6
3,813,827	-				+0.2
3,813,827	-				-0.7
3,813,827	-				+0.7
3,813,827	-				-2.3
3,813,919	+		DDA3937_RS16765	0.13	+0.6
3,813,920	-		DDA3937_RS16765	0.13	+0.5
3,813,920	-		DDA3937_RS16765	0.13	-1.3
3,813,964	+		DDA3937_RS16765	0.16	+0.1
3,814,046	-		DDA3937_RS16765	0.21	+0.2
3,814,046	-		DDA3937_RS16765	0.21	-0.6
3,814,046	-		DDA3937_RS16765	0.21	-0.7
3,814,105	+		DDA3937_RS16765	0.25	-0.7
3,814,106	-		DDA3937_RS16765	0.25	-0.5
3,814,109	+		DDA3937_RS16765	0.25	-3.2
3,814,109	+		DDA3937_RS16765	0.25	-0.5
3,814,110	-		DDA3937_RS16765	0.25	-0.6
3,814,129	+		DDA3937_RS16765	0.27	+1.2
3,814,130	-		DDA3937_RS16765	0.27	+2.0
3,814,130	-		DDA3937_RS16765	0.27	-1.0
3,814,211	+		DDA3937_RS16765	0.32	-0.9
3,814,211	+		DDA3937_RS16765	0.32	+0.3
3,814,211	+		DDA3937_RS16765	0.32	-0.6
3,814,211	+				-1.0
3,814,212	-		DDA3937_RS16765	0.32	-0.6
3,814,212	-		DDA3937_RS16765	0.32	+0.3
3,814,212	-		DDA3937_RS16765	0.32	+0.5
3,814,234	+		DDA3937_RS16765	0.33	+0.3
3,814,235	-		DDA3937_RS16765	0.33	-1.4
3,814,235	-		DDA3937_RS16765	0.33	+0.5
3,814,235	-		DDA3937_RS16765	0.33	-1.1
3,814,235	-		DDA3937_RS16765	0.33	-0.2
3,814,235	-		DDA3937_RS16765	0.33	+0.1
3,814,235	-		DDA3937_RS16765	0.33	-0.4
3,814,237	+		DDA3937_RS16765	0.34	+0.4
3,814,242	+		DDA3937_RS16765	0.34	+0.0
3,814,243	-		DDA3937_RS16765	0.34	-2.8
3,814,243	-		DDA3937_RS16765	0.34	-0.7
3,814,248	+		DDA3937_RS16765	0.34	-0.3
3,814,249	-				+0.2
3,814,257	+		DDA3937_RS16765	0.35	+0.2
3,814,257	+		DDA3937_RS16765	0.35	+0.4
3,814,258	-		DDA3937_RS16765	0.35	+1.0
3,814,258	-		DDA3937_RS16765	0.35	+0.3
3,814,264	-		DDA3937_RS16765	0.35	-0.3
3,814,335	+		DDA3937_RS16765	0.40	+1.0
3,814,335	+		DDA3937_RS16765	0.40	+0.2
3,814,338	+		DDA3937_RS16765	0.40	+0.3
3,814,338	+		DDA3937_RS16765	0.40	+0.5
3,814,339	-		DDA3937_RS16765	0.40	-3.0
3,814,339	-		DDA3937_RS16765	0.40	-1.1
3,814,339	-		DDA3937_RS16765	0.40	-0.7
3,814,339	-		DDA3937_RS16765	0.40	-0.7
3,814,405	+		DDA3937_RS16765	0.45	+3.3
3,814,406	-		DDA3937_RS16765	0.45	-0.4
3,814,528	+		DDA3937_RS16765	0.53	+0.5
3,814,528	+		DDA3937_RS16765	0.53	-2.3
3,814,568	+		DDA3937_RS16765	0.55	+1.9
3,814,568	+		DDA3937_RS16765	0.55	+0.5
3,814,569	-		DDA3937_RS16765	0.55	+0.5
3,814,569	-		DDA3937_RS16765	0.55	-0.6
3,814,584	+		DDA3937_RS16765	0.56	-1.0
3,814,584	+		DDA3937_RS16765	0.56	-0.6
3,814,584	+		DDA3937_RS16765	0.56	+0.2
3,814,585	-		DDA3937_RS16765	0.56	-0.4
3,814,620	-		DDA3937_RS16765	0.59	-0.3
3,814,622	-		DDA3937_RS16765	0.59	-0.4
3,814,675	-		DDA3937_RS16765	0.62	+0.1
3,814,675	-		DDA3937_RS16765	0.62	-0.7