Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01390

Experiment: M9+glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01385 and DDA3937_RS01390 overlap by 11 nucleotidesDDA3937_RS01390 and DDA3937_RS01395 are separated by 193 nucleotides DDA3937_RS01385: DDA3937_RS01385 - sodium/pantothenate symporter, at 309,925 to 311,376 _RS01385 DDA3937_RS01390: DDA3937_RS01390 - YhdT family protein, at 311,366 to 311,608 _RS01390 DDA3937_RS01395: DDA3937_RS01395 - acetyl-CoA carboxylase biotin carboxylase subunit, at 311,802 to 313,145 _RS01395 Position (kb) 311 312Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 310.531 kb on + strand, within DDA3937_RS01385at 310.532 kb on - strand, within DDA3937_RS01385at 310.532 kb on - strand, within DDA3937_RS01385at 310.763 kb on + strand, within DDA3937_RS01385at 310.764 kb on - strand, within DDA3937_RS01385at 310.764 kb on - strand, within DDA3937_RS01385at 310.764 kb on - strand, within DDA3937_RS01385at 310.764 kb on - strand, within DDA3937_RS01385at 310.862 kb on + strand, within DDA3937_RS01385at 310.862 kb on + strand, within DDA3937_RS01385at 310.862 kb on + strand, within DDA3937_RS01385at 310.862 kb on + strand, within DDA3937_RS01385at 310.862 kb on + strand, within DDA3937_RS01385at 310.863 kb on - strand, within DDA3937_RS01385at 310.863 kb on - strand, within DDA3937_RS01385at 310.863 kb on - strand, within DDA3937_RS01385at 310.863 kb on - strand, within DDA3937_RS01385at 310.863 kb on - strand, within DDA3937_RS01385at 310.876 kb on - strand, within DDA3937_RS01385at 310.876 kb on - strand, within DDA3937_RS01385at 310.876 kb on - strand, within DDA3937_RS01385at 310.876 kb on - strand, within DDA3937_RS01385at 310.889 kb on - strand, within DDA3937_RS01385at 310.905 kb on - strand, within DDA3937_RS01385at 310.905 kb on - strand, within DDA3937_RS01385at 310.905 kb on - strand, within DDA3937_RS01385at 310.905 kb on - strand, within DDA3937_RS01385at 310.905 kb on - strandat 311.033 kb on + strandat 311.033 kb on + strand, within DDA3937_RS01385at 311.033 kb on + strand, within DDA3937_RS01385at 311.034 kb on - strand, within DDA3937_RS01385at 311.034 kb on - strand, within DDA3937_RS01385at 311.064 kb on - strand, within DDA3937_RS01385at 311.162 kb on + strand, within DDA3937_RS01385at 311.162 kb on + strand, within DDA3937_RS01385at 311.168 kb on + strand, within DDA3937_RS01385at 311.169 kb on - strand, within DDA3937_RS01385at 311.210 kb on + strand, within DDA3937_RS01385at 311.210 kb on + strand, within DDA3937_RS01385at 311.210 kb on + strand, within DDA3937_RS01385at 311.210 kb on + strand, within DDA3937_RS01385at 311.210 kb on + strand, within DDA3937_RS01385at 311.210 kb on + strand, within DDA3937_RS01385at 311.210 kb on + strand, within DDA3937_RS01385at 311.211 kb on - strand, within DDA3937_RS01385at 311.211 kb on - strand, within DDA3937_RS01385at 311.211 kb on - strand, within DDA3937_RS01385at 311.211 kb on - strand, within DDA3937_RS01385at 311.211 kb on - strand, within DDA3937_RS01385at 311.211 kb on - strand, within DDA3937_RS01385at 311.211 kb on - strand, within DDA3937_RS01385at 311.211 kb on - strand, within DDA3937_RS01385at 311.215 kb on - strand, within DDA3937_RS01385at 311.312 kb on + strandat 311.312 kb on + strandat 311.313 kb on - strandat 311.338 kb on + strandat 311.338 kb on + strandat 311.338 kb on + strandat 311.338 kb on + strandat 311.339 kb on - strandat 311.339 kb on - strandat 311.339 kb on - strandat 311.339 kb on - strandat 311.339 kb on - strandat 311.339 kb on - strandat 311.339 kb on - strandat 311.339 kb on - strandat 311.343 kb on - strandat 311.406 kb on - strand, within DDA3937_RS01390at 311.537 kb on + strand, within DDA3937_RS01390at 311.544 kb on + strand, within DDA3937_RS01390at 311.544 kb on + strand, within DDA3937_RS01390at 311.544 kb on + strand, within DDA3937_RS01390at 311.545 kb on - strand, within DDA3937_RS01390at 311.559 kb on - strand, within DDA3937_RS01390at 311.594 kb on - strandat 311.653 kb on + strandat 311.653 kb on + strandat 311.654 kb on - strandat 311.654 kb on - strandat 311.654 kb on - strandat 311.660 kb on + strandat 311.685 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glucose
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310,531 + DDA3937_RS01385 0.42 +0.7
310,532 - DDA3937_RS01385 0.42 -0.1
310,532 - DDA3937_RS01385 0.42 +0.6
310,763 + DDA3937_RS01385 0.58 +0.4
310,764 - DDA3937_RS01385 0.58 +0.2
310,764 - DDA3937_RS01385 0.58 +0.8
310,764 - DDA3937_RS01385 0.58 +0.8
310,764 - DDA3937_RS01385 0.58 +0.6
310,862 + DDA3937_RS01385 0.65 +0.9
310,862 + DDA3937_RS01385 0.65 +0.1
310,862 + DDA3937_RS01385 0.65 +1.5
310,862 + DDA3937_RS01385 0.65 +0.0
310,862 + DDA3937_RS01385 0.65 +0.1
310,863 - DDA3937_RS01385 0.65 +0.6
310,863 - DDA3937_RS01385 0.65 -0.3
310,863 - DDA3937_RS01385 0.65 -0.0
310,863 - DDA3937_RS01385 0.65 +1.1
310,863 - DDA3937_RS01385 0.65 +1.7
310,876 - DDA3937_RS01385 0.65 +0.4
310,876 - DDA3937_RS01385 0.65 -0.3
310,876 - DDA3937_RS01385 0.65 +1.6
310,876 - DDA3937_RS01385 0.65 +0.3
310,889 - DDA3937_RS01385 0.66 -0.0
310,905 - DDA3937_RS01385 0.67 -2.3
310,905 - DDA3937_RS01385 0.67 +0.1
310,905 - DDA3937_RS01385 0.67 -2.9
310,905 - DDA3937_RS01385 0.67 -1.2
310,905 - -0.3
311,033 + -1.5
311,033 + DDA3937_RS01385 0.76 +0.6
311,033 + DDA3937_RS01385 0.76 -0.1
311,034 - DDA3937_RS01385 0.76 +1.4
311,034 - DDA3937_RS01385 0.76 +1.4
311,064 - DDA3937_RS01385 0.78 +0.9
311,162 + DDA3937_RS01385 0.85 -0.9
311,162 + DDA3937_RS01385 0.85 +0.1
311,168 + DDA3937_RS01385 0.86 -0.1
311,169 - DDA3937_RS01385 0.86 +1.5
311,210 + DDA3937_RS01385 0.88 -0.7
311,210 + DDA3937_RS01385 0.88 -0.5
311,210 + DDA3937_RS01385 0.88 -0.7
311,210 + DDA3937_RS01385 0.88 +0.5
311,210 + DDA3937_RS01385 0.88 +2.3
311,210 + DDA3937_RS01385 0.88 +0.9
311,210 + DDA3937_RS01385 0.88 +0.5
311,211 - DDA3937_RS01385 0.89 +1.9
311,211 - DDA3937_RS01385 0.89 +0.8
311,211 - DDA3937_RS01385 0.89 -1.6
311,211 - DDA3937_RS01385 0.89 -0.3
311,211 - DDA3937_RS01385 0.89 +0.2
311,211 - DDA3937_RS01385 0.89 +1.7
311,211 - DDA3937_RS01385 0.89 -0.3
311,211 - DDA3937_RS01385 0.89 +1.0
311,215 - DDA3937_RS01385 0.89 +0.6
311,312 + -1.7
311,312 + +1.9
311,313 - +1.2
311,338 + -1.3
311,338 + +0.4
311,338 + -0.4
311,338 + -1.7
311,339 - +1.3
311,339 - +0.8
311,339 - -0.4
311,339 - +0.3
311,339 - +1.0
311,339 - +1.5
311,339 - -0.0
311,339 - -2.1
311,343 - -1.0
311,406 - DDA3937_RS01390 0.16 +1.6
311,537 + DDA3937_RS01390 0.70 +0.0
311,544 + DDA3937_RS01390 0.73 -0.0
311,544 + DDA3937_RS01390 0.73 +1.6
311,544 + DDA3937_RS01390 0.73 -1.7
311,545 - DDA3937_RS01390 0.74 +0.4
311,559 - DDA3937_RS01390 0.79 +1.6
311,594 - +0.6
311,653 + -0.6
311,653 + +0.7
311,654 - -0.6
311,654 - -0.7
311,654 - +1.1
311,660 + -1.0
311,685 + +0.9

Or see this region's nucleotide sequence