Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15655

Experiment: M9+glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose
3,585,159	+		DDA3937_RS15650	0.80	+0.9
3,585,159	+		DDA3937_RS15650	0.80	-1.0
3,585,160	-		DDA3937_RS15650	0.80	-1.3
3,585,289	+		DDA3937_RS15650	0.89	+0.3
3,585,290	-		DDA3937_RS15650	0.89	-1.0
3,585,296	-		DDA3937_RS15650	0.89	-1.5
3,585,296	-		DDA3937_RS15650	0.89	-0.5
3,585,339	+				+0.4
3,585,340	-				+0.0
3,585,348	+				-0.5
3,585,392	-				-0.3
3,585,479	-				+1.6
3,585,479	-				+0.2
3,585,505	+				+0.6
3,585,506	-				-2.9
3,585,506	-				+0.3
3,585,521	+				-0.3
3,585,521	+				-0.3
3,585,522	-				+1.0
3,585,675	+				+2.0
3,585,675	+				-0.5
3,585,676	-				-2.2
3,585,676	-				+1.3
3,585,676	-				+1.3
3,585,676	-				-0.8
3,585,676	-				+0.2
3,585,738	-				+1.4
3,585,754	+				+0.0
3,585,755	-				-0.5
3,585,760	+				+1.0
3,585,760	+				-0.0
3,585,761	-				+1.0
3,585,761	-				-0.5
3,585,782	+				-0.5
3,585,782	+				+1.0
3,585,783	-				+0.2
3,585,808	-				-1.7
3,585,818	+				+1.0
3,585,819	-				-0.6
3,585,948	-				+0.1
3,585,971	+				+0.2
3,585,972	-				+0.5
3,586,084	+				-0.5
3,586,084	+				+1.0
3,586,084	+				-0.4
3,586,084	+				+1.0
3,586,084	+				-1.7
3,586,085	-				-0.4
3,586,085	-				+0.5
3,586,085	-				+0.5
3,586,085	-				+0.7
3,586,085	-				+0.5
3,586,137	-				-0.9
3,586,191	+				-2.5
3,586,191	+				-3.6
3,586,191	+				-3.4
3,586,191	+				-0.2
3,586,191	+				-3.0
3,586,192	-				-3.1
3,586,192	-				-4.2
3,586,285	-				-4.8
3,586,350	-				-2.8
3,586,370	+				+0.0
3,586,370	+				+0.0
3,586,371	-				-1.2
3,586,371	-				-2.9
3,586,641	+		DDA3937_RS15655	0.12	-3.8
3,586,642	-		DDA3937_RS15655	0.12	-3.3
3,586,642	-		DDA3937_RS15655	0.12	-2.6
3,586,645	+		DDA3937_RS15655	0.13	-3.0
3,586,645	+		DDA3937_RS15655	0.13	-1.0
3,586,645	+		DDA3937_RS15655	0.13	-3.8
3,586,645	+		DDA3937_RS15655	0.13	-1.1
3,586,646	-		DDA3937_RS15655	0.13	-3.7
3,586,646	-		DDA3937_RS15655	0.13	-2.5
3,586,646	-		DDA3937_RS15655	0.13	-1.3
3,586,646	-		DDA3937_RS15655	0.13	-1.5
3,586,646	-		DDA3937_RS15655	0.13	-2.7
3,586,646	-		DDA3937_RS15655	0.13	-1.3
3,586,646	-		DDA3937_RS15655	0.13	-3.1
3,586,760	+		DDA3937_RS15655	0.15	-1.0
3,586,801	+		DDA3937_RS15655	0.17	+0.7
3,586,801	+		DDA3937_RS15655	0.17	-1.3
3,586,801	+		DDA3937_RS15655	0.17	-4.3
3,586,802	-		DDA3937_RS15655	0.17	-2.8
3,586,802	-		DDA3937_RS15655	0.17	-2.0
3,586,806	+		DDA3937_RS15655	0.17	-3.1
3,586,833	+		DDA3937_RS15655	0.17	-3.0
3,586,833	+		DDA3937_RS15655	0.17	-1.5
3,586,833	+		DDA3937_RS15655	0.17	-1.1
3,586,834	-		DDA3937_RS15655	0.17	-3.8
3,586,834	-		DDA3937_RS15655	0.17	-3.3
3,586,839	+		DDA3937_RS15655	0.18	-2.3
3,586,839	+		DDA3937_RS15655	0.18	-1.5
3,586,839	+		DDA3937_RS15655	0.18	-2.3
3,586,840	-		DDA3937_RS15655	0.18	-2.1
3,586,846	-		DDA3937_RS15655	0.18	-3.4
3,586,846	-		DDA3937_RS15655	0.18	+0.0
3,586,991	-		DDA3937_RS15655	0.21	-2.7
3,586,991	-		DDA3937_RS15655	0.21	-3.9
3,587,109	+		DDA3937_RS15655	0.24	-4.3
3,587,109	+		DDA3937_RS15655	0.24	-4.5
3,587,110	-		DDA3937_RS15655	0.24	-1.0
3,587,127	-		DDA3937_RS15655	0.25	-2.1
3,587,127	-		DDA3937_RS15655	0.25	-2.9
3,587,127	-		DDA3937_RS15655	0.25	-5.8
3,587,186	+		DDA3937_RS15655	0.26	-3.0
3,587,186	+		DDA3937_RS15655	0.26	-2.1
3,587,186	+		DDA3937_RS15655	0.26	-3.9
3,587,187	-				-1.5
3,587,187	-		DDA3937_RS15655	0.26	-2.8
3,587,221	+		DDA3937_RS15655	0.27	+0.0
3,587,472	+		DDA3937_RS15655	0.34	-4.0
3,587,473	-		DDA3937_RS15655	0.34	-3.1
3,587,490	+		DDA3937_RS15655	0.34	-3.6
3,587,490	+		DDA3937_RS15655	0.34	-1.5
3,587,491	-		DDA3937_RS15655	0.34	-1.3
3,587,611	-		DDA3937_RS15655	0.37	-0.5
3,587,724	+		DDA3937_RS15655	0.40	-3.5
3,587,789	+		DDA3937_RS15655	0.42	-1.0
3,587,789	+		DDA3937_RS15655	0.42	-1.8
3,587,789	+		DDA3937_RS15655	0.42	-3.7
3,587,789	+		DDA3937_RS15655	0.42	-1.0
3,587,789	+		DDA3937_RS15655	0.42	-2.0
3,587,790	-		DDA3937_RS15655	0.42	-2.7
3,587,790	-		DDA3937_RS15655	0.42	+0.0
3,587,932	-		DDA3937_RS15655	0.46	-2.4
3,587,978	+		DDA3937_RS15655	0.47	-2.7
3,587,979	-		DDA3937_RS15655	0.47	-2.0
3,587,979	-		DDA3937_RS15655	0.47	-3.0
3,587,981	+		DDA3937_RS15655	0.47	-1.3
3,587,981	+		DDA3937_RS15655	0.47	-3.6
3,587,981	+		DDA3937_RS15655	0.47	-2.0
3,587,981	+		DDA3937_RS15655	0.47	-0.5
3,587,981	+		DDA3937_RS15655	0.47	-0.5
3,587,981	+		DDA3937_RS15655	0.47	-2.6
3,587,981	+		DDA3937_RS15655	0.47	-2.5
3,587,982	-		DDA3937_RS15655	0.47	-4.2
3,587,982	-		DDA3937_RS15655	0.47	-2.7
3,587,982	-		DDA3937_RS15655	0.47	-4.4
3,587,982	-		DDA3937_RS15655	0.47	-3.0
3,587,982	-		DDA3937_RS15655	0.47	-5.0
3,587,982	-		DDA3937_RS15655	0.47	-2.0
3,587,982	-		DDA3937_RS15655	0.47	-2.9
3,587,982	-		DDA3937_RS15655	0.47	+0.6
3,587,982	-		DDA3937_RS15655	0.47	-4.8
3,587,982	-		DDA3937_RS15655	0.47	-1.0
3,587,982	-		DDA3937_RS15655	0.47	-4.2
3,587,982	-		DDA3937_RS15655	0.47	-3.1
3,587,982	-		DDA3937_RS15655	0.47	-2.9
3,587,982	-		DDA3937_RS15655	0.47	-2.7
3,587,982	-		DDA3937_RS15655	0.47	-3.7
3,587,985	+		DDA3937_RS15655	0.47	-2.4
3,588,155	+		DDA3937_RS15655	0.51	-0.5
3,588,252	+		DDA3937_RS15655	0.54	-5.5
3,588,253	-		DDA3937_RS15655	0.54	-3.7
3,588,264	+		DDA3937_RS15655	0.54	-4.7
3,588,265	-		DDA3937_RS15655	0.54	+0.0
3,588,330	-		DDA3937_RS15655	0.56	-3.2
3,588,398	+				+2.0
3,588,398	+		DDA3937_RS15655	0.58	-2.1
3,588,398	+		DDA3937_RS15655	0.58	-3.7
3,588,399	-		DDA3937_RS15655	0.58	-2.0
3,588,399	-		DDA3937_RS15655	0.58	-1.3
3,588,399	-		DDA3937_RS15655	0.58	-2.3
3,588,418	-		DDA3937_RS15655	0.58	-4.3
3,588,553	-		DDA3937_RS15655	0.62	-1.5
3,588,826	-		DDA3937_RS15655	0.69	-1.3
3,588,831	-		DDA3937_RS15655	0.69	+0.0
3,588,838	+		DDA3937_RS15655	0.69	-1.0
3,588,839	-		DDA3937_RS15655	0.69	-2.3
3,588,839	-		DDA3937_RS15655	0.69	+0.4
3,588,875	+		DDA3937_RS15655	0.70	-2.0
3,588,875	+		DDA3937_RS15655	0.70	-1.5
3,588,876	-		DDA3937_RS15655	0.70	-1.0
3,588,876	-		DDA3937_RS15655	0.70	-4.3
3,588,876	-		DDA3937_RS15655	0.70	+0.0
3,588,876	-		DDA3937_RS15655	0.70	-2.5
3,588,876	-		DDA3937_RS15655	0.70	-7.0
3,588,876	-		DDA3937_RS15655	0.70	-3.2
3,588,876	-		DDA3937_RS15655	0.70	-4.5
3,588,880	-		DDA3937_RS15655	0.70	-3.1
3,588,975	+		DDA3937_RS15655	0.72	-4.4
3,589,014	+		DDA3937_RS15655	0.73	-3.4
3,589,014	+		DDA3937_RS15655	0.73	-3.3
3,589,014	+		DDA3937_RS15655	0.73	-1.5
3,589,212	-		DDA3937_RS15655	0.79	-1.5
3,589,279	-		DDA3937_RS15655	0.80	-2.4
3,589,279	-		DDA3937_RS15655	0.80	+0.5
3,589,280	+		DDA3937_RS15655	0.80	-1.7
3,589,281	-		DDA3937_RS15655	0.80	-3.5
3,589,281	-		DDA3937_RS15655	0.80	-3.0
3,589,281	-		DDA3937_RS15655	0.80	-0.5
3,589,295	+		DDA3937_RS15655	0.81	-2.9
3,589,295	+		DDA3937_RS15655	0.81	-1.5
3,589,295	+				-2.0
3,589,296	-		DDA3937_RS15655	0.81	-3.4
3,589,296	-		DDA3937_RS15655	0.81	-2.5
3,589,296	-		DDA3937_RS15655	0.81	-2.7
3,589,296	-		DDA3937_RS15655	0.81	-1.5
3,589,296	-		DDA3937_RS15655	0.81	-3.5
3,589,296	-		DDA3937_RS15655	0.81	-2.1
3,589,305	+		DDA3937_RS15655	0.81	-1.3
3,589,305	+		DDA3937_RS15655	0.81	-3.5
3,589,305	+		DDA3937_RS15655	0.81	-2.2
3,589,427	+		DDA3937_RS15655	0.84	-1.5
3,589,427	+				-2.1
3,589,427	+		DDA3937_RS15655	0.84	-3.4
3,589,427	+		DDA3937_RS15655	0.84	-2.5
3,589,427	+		DDA3937_RS15655	0.84	-1.9
3,589,427	+		DDA3937_RS15655	0.84	-2.7
3,589,427	+		DDA3937_RS15655	0.84	-2.0
3,589,427	+		DDA3937_RS15655	0.84	-5.1
3,589,427	+		DDA3937_RS15655	0.84	-4.1
3,589,427	+		DDA3937_RS15655	0.84	-1.8
3,589,428	-		DDA3937_RS15655	0.84	-4.3
3,589,428	-		DDA3937_RS15655	0.84	-2.0
3,589,428	-		DDA3937_RS15655	0.84	-2.5
3,589,428	-		DDA3937_RS15655	0.84	-2.0
3,589,428	-		DDA3937_RS15655	0.84	-1.1
3,589,482	-		DDA3937_RS15655	0.86	-3.2
3,589,709	+				-3.1
3,589,710	-				-2.3
3,589,710	-				-2.4
3,589,710	-				-3.5
3,589,710	-				-2.3
3,589,710	-				+0.0
3,589,710	-				-1.8
3,589,710	-				-0.8
3,589,866	-				-1.8
3,589,937	+				-3.8
3,589,938	-				-3.7
3,589,938	-				-4.3
3,589,938	-				-5.1
3,589,938	-				-2.3
3,589,938	-				-2.5
3,589,946	+				-3.4
3,589,946	+				-2.1
3,589,947	-				+0.0
3,589,970	+				-1.5
3,589,996	-				-1.3
3,590,036	-				-2.8
3,590,049	-				-2.0
3,590,115	+				-4.2
3,590,116	-				+0.3
3,590,118	+				-5.0
3,590,118	+				-3.8
3,590,119	-				+0.4
3,590,119	-				-1.1
3,590,119	-				+0.6
3,590,120	+				-2.1
3,590,120	+				-1.0
3,590,120	+				-1.0
3,590,121	-				-0.1
3,590,121	-				-0.3
3,590,121	-				+0.9
3,590,121	-				+0.6
3,590,195	+				-1.2
3,590,196	-				+1.5
3,590,196	-				-1.7
3,590,204	+				-1.5
3,590,204	+				-1.4
3,590,204	+				-0.1
3,590,204	+				+0.6
3,590,204	+				+0.3
3,590,204	+				+0.4
3,590,205	-				+0.5
3,590,205	-				-0.5
3,590,207	+				+0.5
3,590,208	-				-0.2
3,590,208	-				-0.1
3,590,267	+				-0.5
3,590,337	+				-0.7
3,590,337	+				+0.2
3,590,342	+				-2.7
3,590,395	+				-0.4
3,590,395	+				-0.5
3,590,396	-				-2.6
3,590,486	+		DDA3937_RS15660	0.11	-1.0
3,590,486	+		DDA3937_RS15660	0.11	-1.2
3,590,486	+		DDA3937_RS15660	0.11	-1.6
3,590,486	+		DDA3937_RS15660	0.11	-0.5
3,590,486	+		DDA3937_RS15660	0.11	-0.5
3,590,486	+		DDA3937_RS15660	0.11	+0.3
3,590,486	+		DDA3937_RS15660	0.11	-1.5
3,590,486	+		DDA3937_RS15660	0.11	-0.5
3,590,653	+		DDA3937_RS15660	0.23	-0.1
3,590,653	+		DDA3937_RS15660	0.23	-0.5
3,590,693	+		DDA3937_RS15660	0.26	+0.3
3,590,694	-		DDA3937_RS15660	0.26	-1.8
3,590,694	-		DDA3937_RS15660	0.26	-1.8
3,590,696	+		DDA3937_RS15660	0.26	-1.0
3,590,720	+		DDA3937_RS15660	0.27	+0.0
3,590,720	+		DDA3937_RS15660	0.27	-2.0
3,590,720	+		DDA3937_RS15660	0.27	-1.1
3,590,760	+		DDA3937_RS15660	0.30	+1.0
3,590,760	+		DDA3937_RS15660	0.30	-0.5
3,590,761	-		DDA3937_RS15660	0.30	-1.6
3,590,761	-		DDA3937_RS15660	0.30	-2.0
3,590,778	+		DDA3937_RS15660	0.31	-2.0
3,590,779	-		DDA3937_RS15660	0.31	+0.9
3,590,828	-		DDA3937_RS15660	0.35	-0.5
3,590,880	+		DDA3937_RS15660	0.38	-1.3
3,590,881	-		DDA3937_RS15660	0.38	+0.1
3,590,881	-		DDA3937_RS15660	0.38	-1.2
3,590,883	+		DDA3937_RS15660	0.39	-0.5
3,590,883	+		DDA3937_RS15660	0.39	-2.1
3,590,883	+		DDA3937_RS15660	0.39	-0.8
3,590,883	+		DDA3937_RS15660	0.39	+1.9
3,590,912	+		DDA3937_RS15660	0.41	-1.6
3,590,912	+		DDA3937_RS15660	0.41	-2.2
3,590,913	-		DDA3937_RS15660	0.41	+0.0
3,590,954	-		DDA3937_RS15660	0.43	-1.3
3,590,954	-		DDA3937_RS15660	0.43	-2.7
3,591,011	+		DDA3937_RS15660	0.47	-1.0
3,591,011	+		DDA3937_RS15660	0.47	+1.4
3,591,011	+		DDA3937_RS15660	0.47	-0.3
3,591,011	+		DDA3937_RS15660	0.47	+0.0
3,591,011	+		DDA3937_RS15660	0.47	-1.0
3,591,011	+		DDA3937_RS15660	0.47	-1.1
3,591,011	+		DDA3937_RS15660	0.47	-1.9
3,591,012	-		DDA3937_RS15660	0.47	-2.1
3,591,012	-		DDA3937_RS15660	0.47	-0.6
3,591,012	-		DDA3937_RS15660	0.47	+0.3
3,591,012	-		DDA3937_RS15660	0.47	-2.1
3,591,012	-		DDA3937_RS15660	0.47	+0.4
3,591,012	-		DDA3937_RS15660	0.47	-2.3
3,591,012	-		DDA3937_RS15660	0.47	-1.8
3,591,012	-		DDA3937_RS15660	0.47	+0.0
3,591,013	+		DDA3937_RS15660	0.47	-1.8
3,591,014	-		DDA3937_RS15660	0.48	-0.7
3,591,014	-		DDA3937_RS15660	0.48	+0.5
3,591,035	-		DDA3937_RS15660	0.49	-1.4