Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05515

Experiment: M9+glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS05505 and DDA3937_RS05510 are separated by 120 nucleotidesDDA3937_RS05510 and DDA3937_RS05515 are separated by 22 nucleotidesDDA3937_RS05515 and DDA3937_RS05520 are separated by 60 nucleotides DDA3937_RS05505: DDA3937_RS05505 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 1,231,715 to 1,232,827 _RS05505 DDA3937_RS05510: DDA3937_RS05510 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,232,948 to 1,233,421 _RS05510 DDA3937_RS05515: DDA3937_RS05515 - transcription antitermination factor NusB, at 1,233,444 to 1,233,863 _RS05515 DDA3937_RS05520: DDA3937_RS05520 - thiamine-phosphate kinase, at 1,233,924 to 1,234,898 _RS05520 Position (kb) 1233 1234Strain fitness (log2 ratio) -2 -1 0 1 2at 1232.825 kb on + strandat 1232.825 kb on + strandat 1232.826 kb on - strandat 1232.826 kb on - strandat 1232.826 kb on - strandat 1232.828 kb on + strandat 1232.828 kb on + strandat 1232.829 kb on - strandat 1232.829 kb on - strandat 1232.829 kb on - strandat 1232.829 kb on - strandat 1232.897 kb on + strandat 1232.897 kb on + strandat 1232.897 kb on + strandat 1232.897 kb on + strandat 1232.902 kb on + strandat 1232.927 kb on + strandat 1233.711 kb on + strand, within DDA3937_RS05515at 1233.923 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glucose
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1,232,825 + +1.1
1,232,825 + -0.7
1,232,826 - -0.5
1,232,826 - +0.5
1,232,826 - +0.5
1,232,828 + +0.5
1,232,828 + -2.1
1,232,829 - +0.9
1,232,829 - -0.4
1,232,829 - -0.5
1,232,829 - -1.9
1,232,897 + +0.3
1,232,897 + -0.7
1,232,897 + -0.5
1,232,897 + -0.7
1,232,902 + -1.7
1,232,927 + -1.6
1,233,711 + DDA3937_RS05515 0.64 -2.4
1,233,923 + +2.1

Or see this region's nucleotide sequence