Strain Fitness in Pseudomonas putida KT2440 around PP_3776

Experiment: Oleic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3775 and PP_3776 overlap by 8 nucleotidesPP_3776 and PP_3777 are separated by 5 nucleotidesPP_3777 and PP_3778 are separated by 17 nucleotides PP_3775: PP_3775 - putative sarcosine oxidase, at 4,303,154 to 4,304,302 _3775 PP_3776: PP_3776 - putative permease (RarD protein), at 4,304,295 to 4,305,209 _3776 PP_3777: PP_3777 - conserved protein of unknown function, at 4,305,215 to 4,306,054 _3777 PP_3778: PP_3778 - Pyrroline-5-carboxylate reductase, at 4,306,072 to 4,306,866 _3778 Position (kb) 4304 4305 4306Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4303.347 kb on + strand, within PP_3775at 4303.347 kb on + strand, within PP_3775at 4303.348 kb on - strand, within PP_3775at 4303.348 kb on - strand, within PP_3775at 4303.348 kb on - strand, within PP_3775at 4303.348 kb on - strand, within PP_3775at 4303.348 kb on - strand, within PP_3775at 4303.348 kb on - strand, within PP_3775at 4303.348 kb on - strand, within PP_3775at 4303.349 kb on + strand, within PP_3775at 4303.349 kb on + strand, within PP_3775at 4303.349 kb on + strand, within PP_3775at 4303.349 kb on + strand, within PP_3775at 4303.350 kb on - strand, within PP_3775at 4303.350 kb on - strand, within PP_3775at 4303.350 kb on - strand, within PP_3775at 4303.350 kb on - strand, within PP_3775at 4303.350 kb on - strand, within PP_3775at 4303.404 kb on - strand, within PP_3775at 4303.404 kb on - strand, within PP_3775at 4303.416 kb on - strand, within PP_3775at 4303.520 kb on - strand, within PP_3775at 4303.539 kb on + strand, within PP_3775at 4303.539 kb on + strand, within PP_3775at 4303.539 kb on + strand, within PP_3775at 4303.540 kb on - strand, within PP_3775at 4303.540 kb on - strand, within PP_3775at 4303.540 kb on - strand, within PP_3775at 4303.540 kb on - strand, within PP_3775at 4303.566 kb on + strand, within PP_3775at 4303.671 kb on - strandat 4303.748 kb on + strand, within PP_3775at 4303.748 kb on + strand, within PP_3775at 4303.749 kb on - strand, within PP_3775at 4303.886 kb on + strand, within PP_3775at 4303.886 kb on + strand, within PP_3775at 4303.966 kb on + strand, within PP_3775at 4304.044 kb on - strand, within PP_3775at 4304.044 kb on - strand, within PP_3775at 4304.065 kb on + strand, within PP_3775at 4304.066 kb on - strand, within PP_3775at 4304.114 kb on + strand, within PP_3775at 4304.115 kb on - strand, within PP_3775at 4304.115 kb on - strand, within PP_3775at 4304.115 kb on - strand, within PP_3775at 4304.115 kb on - strand, within PP_3775at 4304.115 kb on - strand, within PP_3775at 4304.118 kb on + strand, within PP_3775at 4304.166 kb on + strand, within PP_3775at 4304.166 kb on + strand, within PP_3775at 4304.167 kb on - strand, within PP_3775at 4304.167 kb on - strand, within PP_3775at 4304.289 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.297 kb on - strandat 4304.297 kb on - strandat 4304.297 kb on - strandat 4304.297 kb on - strandat 4304.297 kb on - strandat 4304.297 kb on - strandat 4304.297 kb on - strandat 4304.297 kb on - strandat 4304.336 kb on + strandat 4304.337 kb on - strandat 4304.355 kb on + strandat 4304.355 kb on + strandat 4304.415 kb on + strand, within PP_3776at 4304.415 kb on + strand, within PP_3776at 4304.416 kb on - strand, within PP_3776at 4304.416 kb on - strand, within PP_3776at 4304.425 kb on + strand, within PP_3776at 4304.425 kb on + strand, within PP_3776at 4304.425 kb on + strand, within PP_3776at 4304.425 kb on + strand, within PP_3776at 4304.425 kb on + strand, within PP_3776at 4304.426 kb on - strand, within PP_3776at 4304.426 kb on - strand, within PP_3776at 4304.426 kb on - strand, within PP_3776at 4304.713 kb on + strand, within PP_3776at 4304.713 kb on + strand, within PP_3776at 4304.713 kb on + strand, within PP_3776at 4304.713 kb on + strand, within PP_3776at 4304.713 kb on + strand, within PP_3776at 4304.714 kb on - strand, within PP_3776at 4304.714 kb on - strand, within PP_3776at 4304.714 kb on - strand, within PP_3776at 4304.782 kb on + strand, within PP_3776at 4304.800 kb on - strand, within PP_3776at 4304.800 kb on - strand, within PP_3776at 4304.800 kb on - strand, within PP_3776at 4304.891 kb on - strand, within PP_3776at 4304.935 kb on - strand, within PP_3776at 4304.935 kb on - strand, within PP_3776at 4305.024 kb on + strand, within PP_3776at 4305.025 kb on - strand, within PP_3776at 4305.128 kb on - strandat 4305.128 kb on - strandat 4305.174 kb on + strandat 4305.255 kb on + strandat 4305.256 kb on - strandat 4305.367 kb on + strand, within PP_3777at 4305.367 kb on + strand, within PP_3777at 4305.367 kb on + strand, within PP_3777at 4305.367 kb on + strand, within PP_3777at 4305.368 kb on - strand, within PP_3777at 4305.368 kb on - strand, within PP_3777at 4305.369 kb on + strandat 4305.369 kb on + strand, within PP_3777at 4305.369 kb on + strand, within PP_3777at 4305.369 kb on + strand, within PP_3777at 4305.369 kb on + strand, within PP_3777at 4305.369 kb on + strand, within PP_3777at 4305.369 kb on + strand, within PP_3777at 4305.369 kb on + strand, within PP_3777at 4305.370 kb on - strand, within PP_3777at 4305.370 kb on - strand, within PP_3777at 4305.371 kb on + strand, within PP_3777at 4305.371 kb on + strand, within PP_3777at 4305.371 kb on + strand, within PP_3777at 4305.371 kb on + strand, within PP_3777at 4305.371 kb on + strand, within PP_3777at 4305.372 kb on - strand, within PP_3777at 4305.372 kb on - strand, within PP_3777at 4305.372 kb on - strand, within PP_3777at 4305.372 kb on - strand, within PP_3777at 4305.372 kb on - strand, within PP_3777at 4305.441 kb on + strand, within PP_3777at 4305.441 kb on + strand, within PP_3777at 4305.441 kb on + strand, within PP_3777at 4305.442 kb on - strand, within PP_3777at 4305.562 kb on - strand, within PP_3777at 4305.562 kb on - strand, within PP_3777at 4305.562 kb on - strand, within PP_3777at 4305.608 kb on + strand, within PP_3777at 4305.608 kb on + strand, within PP_3777at 4305.659 kb on + strand, within PP_3777at 4305.672 kb on + strand, within PP_3777at 4305.672 kb on + strand, within PP_3777at 4305.806 kb on - strand, within PP_3777at 4305.806 kb on - strand, within PP_3777at 4305.818 kb on + strand, within PP_3777at 4305.819 kb on - strand, within PP_3777at 4305.819 kb on - strand, within PP_3777at 4305.819 kb on - strand, within PP_3777at 4305.819 kb on - strand, within PP_3777at 4305.833 kb on + strand, within PP_3777at 4305.905 kb on - strand, within PP_3777at 4305.973 kb on + strandat 4305.997 kb on - strandat 4306.003 kb on + strandat 4306.003 kb on + strandat 4306.004 kb on - strandat 4306.006 kb on - strandat 4306.006 kb on - strandat 4306.045 kb on + strandat 4306.045 kb on + strandat 4306.045 kb on + strandat 4306.045 kb on + strandat 4306.046 kb on - strandat 4306.046 kb on - strandat 4306.046 kb on - strandat 4306.046 kb on - strandat 4306.046 kb on - strandat 4306.046 kb on - strandat 4306.046 kb on - strandat 4306.161 kb on + strand, within PP_3778

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Per-strain Table

Position Strand Gene LocusTag Fraction Oleic (C)
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4,303,347 + PP_3775 0.17 +0.5
4,303,347 + PP_3775 0.17 +0.1
4,303,348 - PP_3775 0.17 +0.8
4,303,348 - PP_3775 0.17 -1.7
4,303,348 - PP_3775 0.17 +0.6
4,303,348 - PP_3775 0.17 -0.4
4,303,348 - PP_3775 0.17 +0.4
4,303,348 - PP_3775 0.17 +0.5
4,303,348 - PP_3775 0.17 -0.3
4,303,349 + PP_3775 0.17 +1.2
4,303,349 + PP_3775 0.17 +0.8
4,303,349 + PP_3775 0.17 +0.1
4,303,349 + PP_3775 0.17 -2.5
4,303,350 - PP_3775 0.17 +0.5
4,303,350 - PP_3775 0.17 -0.8
4,303,350 - PP_3775 0.17 -0.2
4,303,350 - PP_3775 0.17 +0.4
4,303,350 - PP_3775 0.17 +0.4
4,303,404 - PP_3775 0.22 -0.6
4,303,404 - PP_3775 0.22 -0.7
4,303,416 - PP_3775 0.23 -1.2
4,303,520 - PP_3775 0.32 +0.0
4,303,539 + PP_3775 0.34 +0.9
4,303,539 + PP_3775 0.34 -1.2
4,303,539 + PP_3775 0.34 -0.4
4,303,540 - PP_3775 0.34 +0.4
4,303,540 - PP_3775 0.34 -0.1
4,303,540 - PP_3775 0.34 +1.7
4,303,540 - PP_3775 0.34 -0.6
4,303,566 + PP_3775 0.36 +1.3
4,303,671 - -0.8
4,303,748 + PP_3775 0.52 -0.7
4,303,748 + PP_3775 0.52 -0.9
4,303,749 - PP_3775 0.52 -0.3
4,303,886 + PP_3775 0.64 -0.3
4,303,886 + PP_3775 0.64 -0.6
4,303,966 + PP_3775 0.71 -1.0
4,304,044 - PP_3775 0.77 +0.7
4,304,044 - PP_3775 0.77 -0.4
4,304,065 + PP_3775 0.79 -0.1
4,304,066 - PP_3775 0.79 +1.2
4,304,114 + PP_3775 0.84 -1.3
4,304,115 - PP_3775 0.84 -0.5
4,304,115 - PP_3775 0.84 -1.0
4,304,115 - PP_3775 0.84 +0.2
4,304,115 - PP_3775 0.84 +0.2
4,304,115 - PP_3775 0.84 -0.2
4,304,118 + PP_3775 0.84 -0.7
4,304,166 + PP_3775 0.88 -0.1
4,304,166 + PP_3775 0.88 +0.3
4,304,167 - PP_3775 0.88 +1.1
4,304,167 - PP_3775 0.88 +1.0
4,304,289 + -2.0
4,304,296 + +0.3
4,304,296 + -0.2
4,304,296 + +0.3
4,304,296 + +1.0
4,304,296 + +0.0
4,304,296 + +0.3
4,304,296 + +1.3
4,304,296 + -0.7
4,304,296 + +0.3
4,304,296 + +0.0
4,304,296 + -0.6
4,304,296 + -0.1
4,304,296 + +0.4
4,304,297 - +0.2
4,304,297 - -0.3
4,304,297 - -0.1
4,304,297 - +1.0
4,304,297 - -1.2
4,304,297 - +0.3
4,304,297 - +0.5
4,304,297 - +0.6
4,304,336 + -2.3
4,304,337 - -1.9
4,304,355 + -2.2
4,304,355 + +0.9
4,304,415 + PP_3776 0.13 -0.7
4,304,415 + PP_3776 0.13 -2.1
4,304,416 - PP_3776 0.13 -0.9
4,304,416 - PP_3776 0.13 -1.6
4,304,425 + PP_3776 0.14 -0.5
4,304,425 + PP_3776 0.14 -1.1
4,304,425 + PP_3776 0.14 -1.0
4,304,425 + PP_3776 0.14 -0.7
4,304,425 + PP_3776 0.14 -0.6
4,304,426 - PP_3776 0.14 -0.1
4,304,426 - PP_3776 0.14 -1.9
4,304,426 - PP_3776 0.14 -1.7
4,304,713 + PP_3776 0.46 +0.0
4,304,713 + PP_3776 0.46 -1.4
4,304,713 + PP_3776 0.46 -1.0
4,304,713 + PP_3776 0.46 -2.1
4,304,713 + PP_3776 0.46 +0.1
4,304,714 - PP_3776 0.46 -0.9
4,304,714 - PP_3776 0.46 -1.3
4,304,714 - PP_3776 0.46 +0.8
4,304,782 + PP_3776 0.53 +0.2
4,304,800 - PP_3776 0.55 -0.2
4,304,800 - PP_3776 0.55 -2.0
4,304,800 - PP_3776 0.55 -3.1
4,304,891 - PP_3776 0.65 -1.9
4,304,935 - PP_3776 0.70 -1.1
4,304,935 - PP_3776 0.70 -1.1
4,305,024 + PP_3776 0.80 -1.6
4,305,025 - PP_3776 0.80 -0.9
4,305,128 - -1.5
4,305,128 - -1.0
4,305,174 + +0.1
4,305,255 + -0.4
4,305,256 - +0.4
4,305,367 + PP_3777 0.18 -0.5
4,305,367 + PP_3777 0.18 +0.2
4,305,367 + PP_3777 0.18 +0.0
4,305,367 + PP_3777 0.18 +0.2
4,305,368 - PP_3777 0.18 -0.3
4,305,368 - PP_3777 0.18 +0.2
4,305,369 + -1.0
4,305,369 + PP_3777 0.18 -0.6
4,305,369 + PP_3777 0.18 +1.1
4,305,369 + PP_3777 0.18 -0.6
4,305,369 + PP_3777 0.18 -0.6
4,305,369 + PP_3777 0.18 -1.8
4,305,369 + PP_3777 0.18 -0.2
4,305,369 + PP_3777 0.18 -0.7
4,305,370 - PP_3777 0.18 +0.1
4,305,370 - PP_3777 0.18 +0.2
4,305,371 + PP_3777 0.19 -1.1
4,305,371 + PP_3777 0.19 +0.0
4,305,371 + PP_3777 0.19 -0.3
4,305,371 + PP_3777 0.19 -1.4
4,305,371 + PP_3777 0.19 +1.7
4,305,372 - PP_3777 0.19 +0.2
4,305,372 - PP_3777 0.19 +1.8
4,305,372 - PP_3777 0.19 -0.6
4,305,372 - PP_3777 0.19 +0.0
4,305,372 - PP_3777 0.19 -0.3
4,305,441 + PP_3777 0.27 -2.0
4,305,441 + PP_3777 0.27 -0.8
4,305,441 + PP_3777 0.27 -0.4
4,305,442 - PP_3777 0.27 -0.4
4,305,562 - PP_3777 0.41 +0.3
4,305,562 - PP_3777 0.41 +0.6
4,305,562 - PP_3777 0.41 +0.6
4,305,608 + PP_3777 0.47 +0.3
4,305,608 + PP_3777 0.47 +0.5
4,305,659 + PP_3777 0.53 -3.6
4,305,672 + PP_3777 0.54 -1.4
4,305,672 + PP_3777 0.54 -0.4
4,305,806 - PP_3777 0.70 -0.6
4,305,806 - PP_3777 0.70 +0.2
4,305,818 + PP_3777 0.72 +0.1
4,305,819 - PP_3777 0.72 -2.0
4,305,819 - PP_3777 0.72 -0.8
4,305,819 - PP_3777 0.72 -0.2
4,305,819 - PP_3777 0.72 -0.3
4,305,833 + PP_3777 0.74 -2.9
4,305,905 - PP_3777 0.82 +0.1
4,305,973 + -1.4
4,305,997 - -0.3
4,306,003 + -0.1
4,306,003 + -0.6
4,306,004 - -0.4
4,306,006 - +0.3
4,306,006 - +0.2
4,306,045 + -1.5
4,306,045 + -0.9
4,306,045 + -0.5
4,306,045 + -3.1
4,306,046 - -0.3
4,306,046 - +0.4
4,306,046 - -1.3
4,306,046 - -0.9
4,306,046 - +0.4
4,306,046 - +0.0
4,306,046 - +0.1
4,306,161 + PP_3778 0.11 -0.6

Or see this region's nucleotide sequence