Strain Fitness in Pseudomonas putida KT2440 around PP_0134

Experiment: Nonanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0133 and PP_0134 are separated by 210 nucleotidesPP_0134 and PP_5428 are separated by 174 nucleotidesPP_5428 and PP_0135 are separated by 43 nucleotidesPP_0135 and PP_0136 are separated by 2 nucleotides PP_0133: PP_0133 - Alginate biosynthesis transcriptional regulatory protein AlgB, at 140,500 to 141,846 _0133 PP_0134: PP_0134 - conserved exported protein of unknown function, at 142,057 to 142,878 _0134 PP_5428: PP_5428 - conserved exported protein of unknown function, at 143,053 to 143,343 _5428 PP_0135: PP_0135 - conserved exported protein of unknown function, at 143,387 to 143,548 _0135 PP_0136: PP_0136 - conserved exported protein of unknown function, at 143,551 to 144,021 _0136 Position (kb) 142 143Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 141.119 kb on - strand, within PP_0133at 141.199 kb on + strand, within PP_0133at 141.200 kb on - strand, within PP_0133at 141.200 kb on - strand, within PP_0133at 141.396 kb on + strand, within PP_0133at 141.396 kb on + strand, within PP_0133at 141.397 kb on - strand, within PP_0133at 141.427 kb on + strand, within PP_0133at 141.428 kb on - strand, within PP_0133at 141.530 kb on + strand, within PP_0133at 141.530 kb on + strand, within PP_0133at 141.559 kb on + strand, within PP_0133at 141.559 kb on + strand, within PP_0133at 141.560 kb on - strand, within PP_0133at 141.622 kb on - strand, within PP_0133at 141.682 kb on + strand, within PP_0133at 141.682 kb on + strand, within PP_0133at 141.682 kb on + strand, within PP_0133at 141.683 kb on - strand, within PP_0133at 141.683 kb on - strand, within PP_0133at 141.683 kb on - strand, within PP_0133at 141.683 kb on - strand, within PP_0133at 141.683 kb on - strand, within PP_0133at 141.683 kb on - strand, within PP_0133at 141.683 kb on - strand, within PP_0133at 141.707 kb on - strand, within PP_0133at 141.749 kb on + strandat 141.750 kb on - strandat 141.874 kb on + strandat 141.874 kb on + strandat 141.875 kb on - strandat 141.875 kb on - strandat 141.875 kb on - strandat 141.879 kb on - strandat 141.879 kb on - strandat 141.940 kb on + strandat 141.962 kb on + strandat 141.963 kb on - strandat 141.963 kb on - strandat 141.963 kb on - strandat 141.991 kb on + strandat 141.991 kb on + strandat 141.992 kb on - strandat 141.992 kb on - strandat 141.992 kb on - strandat 142.074 kb on + strandat 142.074 kb on + strandat 142.075 kb on - strandat 142.111 kb on - strandat 142.316 kb on + strand, within PP_0134at 142.317 kb on - strand, within PP_0134at 142.376 kb on - strand, within PP_0134at 142.458 kb on + strand, within PP_0134at 142.458 kb on + strand, within PP_0134at 142.458 kb on + strand, within PP_0134at 142.458 kb on + strand, within PP_0134at 142.459 kb on - strand, within PP_0134at 142.459 kb on - strand, within PP_0134at 142.459 kb on - strand, within PP_0134at 142.459 kb on - strand, within PP_0134at 142.460 kb on + strand, within PP_0134at 142.460 kb on + strand, within PP_0134at 142.460 kb on + strand, within PP_0134at 142.460 kb on + strand, within PP_0134at 142.461 kb on - strand, within PP_0134at 142.461 kb on - strand, within PP_0134at 142.461 kb on - strand, within PP_0134at 142.461 kb on - strand, within PP_0134at 142.461 kb on - strand, within PP_0134at 142.461 kb on - strand, within PP_0134at 142.461 kb on - strand, within PP_0134at 142.466 kb on + strand, within PP_0134at 142.466 kb on + strand, within PP_0134at 142.467 kb on - strand, within PP_0134at 142.564 kb on + strand, within PP_0134at 142.564 kb on + strand, within PP_0134at 142.565 kb on - strand, within PP_0134at 142.565 kb on - strand, within PP_0134at 142.565 kb on - strand, within PP_0134at 142.691 kb on - strand, within PP_0134at 142.691 kb on - strand, within PP_0134at 142.921 kb on - strandat 142.921 kb on - strandat 142.921 kb on - strandat 143.009 kb on + strandat 143.157 kb on - strand, within PP_5428at 143.158 kb on + strand, within PP_5428at 143.158 kb on + strand, within PP_5428at 143.158 kb on + strand, within PP_5428at 143.158 kb on + strand, within PP_5428at 143.159 kb on - strand, within PP_5428at 143.161 kb on + strand, within PP_5428at 143.161 kb on + strand, within PP_5428at 143.161 kb on + strand, within PP_5428at 143.162 kb on - strand, within PP_5428at 143.162 kb on - strand, within PP_5428at 143.383 kb on + strandat 143.383 kb on + strandat 143.383 kb on + strandat 143.384 kb on - strandat 143.384 kb on - strandat 143.384 kb on - strandat 143.384 kb on - strandat 143.436 kb on + strand, within PP_0135at 143.436 kb on + strand, within PP_0135at 143.437 kb on - strand, within PP_0135at 143.467 kb on + strand, within PP_0135at 143.467 kb on + strand, within PP_0135at 143.467 kb on + strand, within PP_0135at 143.468 kb on - strand, within PP_0135at 143.468 kb on - strand, within PP_0135at 143.468 kb on - strand, within PP_0135at 143.514 kb on + strand, within PP_0135at 143.515 kb on - strand, within PP_0135at 143.525 kb on + strand, within PP_0135at 143.788 kb on + strand, within PP_0136at 143.788 kb on + strand, within PP_0136at 143.788 kb on + strand, within PP_0136at 143.788 kb on + strand, within PP_0136at 143.788 kb on + strand, within PP_0136at 143.789 kb on - strand, within PP_0136at 143.789 kb on - strand, within PP_0136at 143.789 kb on - strand, within PP_0136at 143.789 kb on - strand, within PP_0136at 143.789 kb on - strand, within PP_0136at 143.789 kb on - strand, within PP_0136at 143.831 kb on - strand, within PP_0136at 143.831 kb on - strand, within PP_0136at 143.831 kb on - strand, within PP_0136at 143.831 kb on - strand, within PP_0136at 143.875 kb on + strand, within PP_0136

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Per-strain Table

Position Strand Gene LocusTag Fraction Nonanoic (C)
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141,119 - PP_0133 0.46 -0.7
141,199 + PP_0133 0.52 +0.2
141,200 - PP_0133 0.52 -0.1
141,200 - PP_0133 0.52 -1.2
141,396 + PP_0133 0.67 +0.9
141,396 + PP_0133 0.67 +0.0
141,397 - PP_0133 0.67 +0.2
141,427 + PP_0133 0.69 -0.3
141,428 - PP_0133 0.69 -1.3
141,530 + PP_0133 0.76 +0.9
141,530 + PP_0133 0.76 -0.1
141,559 + PP_0133 0.79 +0.7
141,559 + PP_0133 0.79 +0.3
141,560 - PP_0133 0.79 +0.3
141,622 - PP_0133 0.83 +0.3
141,682 + PP_0133 0.88 +0.8
141,682 + PP_0133 0.88 +1.3
141,682 + PP_0133 0.88 +0.4
141,683 - PP_0133 0.88 -0.6
141,683 - PP_0133 0.88 -0.2
141,683 - PP_0133 0.88 +0.3
141,683 - PP_0133 0.88 -0.0
141,683 - PP_0133 0.88 +0.1
141,683 - PP_0133 0.88 -0.5
141,683 - PP_0133 0.88 +0.5
141,707 - PP_0133 0.90 +0.8
141,749 + -0.0
141,750 - -0.2
141,874 + -0.0
141,874 + -0.9
141,875 - +0.8
141,875 - +1.2
141,875 - +0.6
141,879 - -0.2
141,879 - +0.5
141,940 + +0.8
141,962 + -0.5
141,963 - +0.2
141,963 - +0.5
141,963 - +0.3
141,991 + +0.3
141,991 + -0.1
141,992 - -0.6
141,992 - +0.9
141,992 - +0.5
142,074 + +0.8
142,074 + -0.7
142,075 - +0.2
142,111 - +0.5
142,316 + PP_0134 0.32 -0.4
142,317 - PP_0134 0.32 +0.5
142,376 - PP_0134 0.39 +0.1
142,458 + PP_0134 0.49 -0.2
142,458 + PP_0134 0.49 +0.2
142,458 + PP_0134 0.49 +0.6
142,458 + PP_0134 0.49 +0.6
142,459 - PP_0134 0.49 +0.9
142,459 - PP_0134 0.49 +0.6
142,459 - PP_0134 0.49 -0.1
142,459 - PP_0134 0.49 +3.9
142,460 + PP_0134 0.49 +0.2
142,460 + PP_0134 0.49 +0.2
142,460 + PP_0134 0.49 +0.3
142,460 + PP_0134 0.49 +0.9
142,461 - PP_0134 0.49 +1.0
142,461 - PP_0134 0.49 -0.3
142,461 - PP_0134 0.49 +0.6
142,461 - PP_0134 0.49 +0.1
142,461 - PP_0134 0.49 +0.3
142,461 - PP_0134 0.49 +1.4
142,461 - PP_0134 0.49 +2.4
142,466 + PP_0134 0.50 +1.2
142,466 + PP_0134 0.50 +0.7
142,467 - PP_0134 0.50 +0.1
142,564 + PP_0134 0.62 -0.4
142,564 + PP_0134 0.62 +1.1
142,565 - PP_0134 0.62 +0.8
142,565 - PP_0134 0.62 +1.0
142,565 - PP_0134 0.62 +0.6
142,691 - PP_0134 0.77 +0.1
142,691 - PP_0134 0.77 -2.0
142,921 - -0.4
142,921 - +0.1
142,921 - +0.4
143,009 + -0.7
143,157 - PP_5428 0.36 -1.6
143,158 + PP_5428 0.36 +0.6
143,158 + PP_5428 0.36 -0.7
143,158 + PP_5428 0.36 +1.2
143,158 + PP_5428 0.36 +0.1
143,159 - PP_5428 0.36 +0.8
143,161 + PP_5428 0.37 +0.4
143,161 + PP_5428 0.37 +0.5
143,161 + PP_5428 0.37 +0.1
143,162 - PP_5428 0.37 -0.1
143,162 - PP_5428 0.37 +0.9
143,383 + +1.7
143,383 + -0.7
143,383 + +0.9
143,384 - -1.2
143,384 - -0.2
143,384 - -1.9
143,384 - +0.4
143,436 + PP_0135 0.30 -0.5
143,436 + PP_0135 0.30 +0.3
143,437 - PP_0135 0.31 +1.1
143,467 + PP_0135 0.49 +1.9
143,467 + PP_0135 0.49 -1.0
143,467 + PP_0135 0.49 -0.9
143,468 - PP_0135 0.50 +0.1
143,468 - PP_0135 0.50 +0.1
143,468 - PP_0135 0.50 -0.5
143,514 + PP_0135 0.78 -0.4
143,515 - PP_0135 0.79 +0.6
143,525 + PP_0135 0.85 -0.6
143,788 + PP_0136 0.50 +0.3
143,788 + PP_0136 0.50 -1.5
143,788 + PP_0136 0.50 +0.6
143,788 + PP_0136 0.50 -0.2
143,788 + PP_0136 0.50 -1.5
143,789 - PP_0136 0.51 +0.3
143,789 - PP_0136 0.51 +0.9
143,789 - PP_0136 0.51 +0.6
143,789 - PP_0136 0.51 +0.5
143,789 - PP_0136 0.51 -1.0
143,789 - PP_0136 0.51 -0.5
143,831 - PP_0136 0.59 -1.0
143,831 - PP_0136 0.59 +0.2
143,831 - PP_0136 0.59 -0.4
143,831 - PP_0136 0.59 -0.3
143,875 + PP_0136 0.69 +0.5

Or see this region's nucleotide sequence