Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4503 and PP_4504 are separated by 162 nucleotides PP_4504 and PP_4505 are separated by 58 nucleotides PP_4505 and PP_4506 are separated by 130 nucleotides PP_4506 and PP_4507 are separated by 102 nucleotides
PP_4503: PP_4503 - DNA-binding response regulator, at 5,116,912 to 5,117,589
_4503
PP_4504: PP_4504 - conserved exported protein of unknown function, at 5,117,752 to 5,118,168
_4504
PP_4505: PP_4505 - Sensor histidine kinase, at 5,118,227 to 5,119,567
_4505
PP_4506: PP_4506 - Nitroreductase family protein, at 5,119,698 to 5,120,255
_4506
PP_4507: PP_4507 - potassium transporter, at 5,120,358 to 5,121,812
_4507
Position (kb) 5118
5119
5120 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5117.259 kb on - strand, within PP_4503 at 5117.318 kb on - strand, within PP_4503 at 5117.473 kb on + strand, within PP_4503 at 5117.474 kb on - strand, within PP_4503 at 5117.549 kb on + strand at 5117.550 kb on - strand at 5117.550 kb on - strand at 5117.572 kb on + strand at 5117.573 kb on - strand at 5117.575 kb on + strand at 5117.575 kb on + strand at 5117.576 kb on - strand at 5117.576 kb on - strand at 5117.576 kb on - strand at 5117.576 kb on - strand at 5117.576 kb on - strand at 5117.576 kb on - strand at 5117.578 kb on + strand at 5117.579 kb on - strand at 5117.579 kb on - strand at 5117.587 kb on + strand at 5117.587 kb on + strand at 5117.658 kb on + strand at 5117.658 kb on + strand at 5117.659 kb on - strand at 5117.669 kb on + strand at 5117.670 kb on - strand at 5117.960 kb on - strand, within PP_4504 at 5117.960 kb on - strand, within PP_4504 at 5118.166 kb on + strand at 5118.166 kb on + strand at 5118.167 kb on - strand at 5118.167 kb on - strand at 5118.167 kb on - strand at 5118.221 kb on + strand at 5118.222 kb on - strand at 5118.393 kb on - strand, within PP_4505 at 5118.587 kb on + strand, within PP_4505 at 5118.614 kb on + strand, within PP_4505 at 5118.614 kb on + strand, within PP_4505 at 5118.626 kb on + strand, within PP_4505 at 5118.627 kb on - strand, within PP_4505 at 5118.627 kb on - strand, within PP_4505 at 5118.803 kb on + strand, within PP_4505 at 5118.803 kb on + strand, within PP_4505 at 5118.803 kb on + strand, within PP_4505 at 5118.803 kb on + strand, within PP_4505 at 5118.803 kb on + strand, within PP_4505 at 5118.804 kb on - strand, within PP_4505 at 5118.925 kb on - strand, within PP_4505 at 5118.925 kb on - strand, within PP_4505 at 5119.612 kb on + strand at 5119.699 kb on + strand at 5119.699 kb on + strand at 5119.699 kb on + strand at 5119.700 kb on - strand at 5119.700 kb on - strand at 5119.712 kb on + strand at 5119.712 kb on + strand at 5119.712 kb on + strand at 5119.712 kb on + strand at 5119.713 kb on - strand at 5119.713 kb on - strand at 5119.713 kb on - strand at 5119.715 kb on + strand at 5119.715 kb on + strand at 5119.777 kb on + strand, within PP_4506 at 5119.777 kb on + strand, within PP_4506 at 5119.777 kb on + strand, within PP_4506 at 5119.777 kb on + strand, within PP_4506 at 5119.777 kb on + strand, within PP_4506 at 5119.778 kb on - strand, within PP_4506 at 5119.778 kb on - strand, within PP_4506 at 5119.778 kb on - strand, within PP_4506 at 5119.778 kb on - strand, within PP_4506 at 5119.778 kb on - strand, within PP_4506 at 5119.784 kb on - strand, within PP_4506 at 5119.784 kb on - strand, within PP_4506 at 5119.857 kb on - strand, within PP_4506 at 5119.857 kb on - strand, within PP_4506 at 5120.111 kb on + strand, within PP_4506 at 5120.112 kb on - strand, within PP_4506 at 5120.292 kb on + strand at 5120.293 kb on - strand at 5120.299 kb on + strand at 5120.300 kb on - strand at 5120.300 kb on - strand at 5120.300 kb on - strand at 5120.300 kb on - strand at 5120.300 kb on - strand at 5120.300 kb on - strand at 5120.315 kb on + strand at 5120.315 kb on + strand at 5120.315 kb on + strand at 5120.316 kb on - strand at 5120.316 kb on - strand at 5120.316 kb on - strand at 5120.319 kb on + strand at 5120.319 kb on + strand at 5120.319 kb on + strand at 5120.319 kb on + strand at 5120.320 kb on - strand at 5120.320 kb on - strand at 5120.320 kb on - strand at 5120.374 kb on + strand at 5120.374 kb on + strand at 5120.375 kb on - strand at 5120.412 kb on - strand at 5120.554 kb on + strand, within PP_4507 at 5120.554 kb on + strand, within PP_4507 at 5120.555 kb on - strand, within PP_4507 at 5120.555 kb on - strand, within PP_4507 at 5120.555 kb on - strand, within PP_4507 at 5120.555 kb on - strand, within PP_4507 at 5120.555 kb on - strand, within PP_4507
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 5,117,259 - PP_4503 0.51 +0.3 5,117,318 - PP_4503 0.60 +0.0 5,117,473 + PP_4503 0.83 -1.2 5,117,474 - PP_4503 0.83 +1.1 5,117,549 + -0.1 5,117,550 - +0.1 5,117,550 - +1.5 5,117,572 + +0.1 5,117,573 - -0.6 5,117,575 + -0.4 5,117,575 + +0.3 5,117,576 - +0.1 5,117,576 - +0.4 5,117,576 - -0.9 5,117,576 - -0.3 5,117,576 - +0.0 5,117,576 - -0.0 5,117,578 + -0.0 5,117,579 - -1.4 5,117,579 - -0.1 5,117,587 + -0.9 5,117,587 + +0.9 5,117,658 + -0.5 5,117,658 + -1.4 5,117,659 - -0.4 5,117,669 + +0.5 5,117,670 - +0.3 5,117,960 - PP_4504 0.50 +0.2 5,117,960 - PP_4504 0.50 +2.3 5,118,166 + +0.4 5,118,166 + -1.6 5,118,167 - +0.5 5,118,167 - -1.4 5,118,167 - +0.4 5,118,221 + +0.3 5,118,222 - -0.2 5,118,393 - PP_4505 0.12 +0.6 5,118,587 + PP_4505 0.27 -0.2 5,118,614 + PP_4505 0.29 +1.3 5,118,614 + PP_4505 0.29 +0.1 5,118,626 + PP_4505 0.30 +1.3 5,118,627 - PP_4505 0.30 +0.1 5,118,627 - PP_4505 0.30 +0.8 5,118,803 + PP_4505 0.43 +0.7 5,118,803 + PP_4505 0.43 -1.8 5,118,803 + PP_4505 0.43 +1.0 5,118,803 + PP_4505 0.43 +0.4 5,118,803 + PP_4505 0.43 +1.2 5,118,804 - PP_4505 0.43 +0.7 5,118,925 - PP_4505 0.52 +0.1 5,118,925 - PP_4505 0.52 +0.2 5,119,612 + -1.4 5,119,699 + -0.0 5,119,699 + -0.2 5,119,699 + +1.3 5,119,700 - -0.0 5,119,700 - -2.2 5,119,712 + -0.9 5,119,712 + +0.7 5,119,712 + +0.7 5,119,712 + +0.3 5,119,713 - +0.2 5,119,713 - -0.4 5,119,713 - +0.2 5,119,715 + +0.1 5,119,715 + +0.4 5,119,777 + PP_4506 0.14 -0.4 5,119,777 + PP_4506 0.14 -0.3 5,119,777 + PP_4506 0.14 -0.4 5,119,777 + PP_4506 0.14 -0.3 5,119,777 + PP_4506 0.14 +0.8 5,119,778 - PP_4506 0.14 -1.5 5,119,778 - PP_4506 0.14 -0.4 5,119,778 - PP_4506 0.14 +0.8 5,119,778 - PP_4506 0.14 -0.6 5,119,778 - PP_4506 0.14 +1.5 5,119,784 - PP_4506 0.15 -0.6 5,119,784 - PP_4506 0.15 -0.1 5,119,857 - PP_4506 0.28 -0.2 5,119,857 - PP_4506 0.28 -1.0 5,120,111 + PP_4506 0.74 -1.4 5,120,112 - PP_4506 0.74 -0.6 5,120,292 + +0.9 5,120,293 - +0.7 5,120,299 + +0.6 5,120,300 - +1.3 5,120,300 - -0.7 5,120,300 - -1.1 5,120,300 - +0.4 5,120,300 - -2.3 5,120,300 - -0.3 5,120,315 + -2.1 5,120,315 + +0.9 5,120,315 + +0.4 5,120,316 - -0.3 5,120,316 - +0.2 5,120,316 - -2.8 5,120,319 + +2.3 5,120,319 + -0.6 5,120,319 + +2.4 5,120,319 + +0.1 5,120,320 - -0.2 5,120,320 - +0.9 5,120,320 - +1.1 5,120,374 + +0.4 5,120,374 + +0.3 5,120,375 - +1.2 5,120,412 - +0.6 5,120,554 + PP_4507 0.13 -2.3 5,120,554 + PP_4507 0.13 -0.3 5,120,555 - PP_4507 0.14 -2.4 5,120,555 - PP_4507 0.14 +0.8 5,120,555 - PP_4507 0.14 +1.6 5,120,555 - PP_4507 0.14 +0.1 5,120,555 - PP_4507 0.14 +0.2
Or see this region's nucleotide sequence