Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4402 and PP_4403 are separated by 0 nucleotides PP_4403 and PP_4404 are separated by 2 nucleotides
PP_4402: PP_4402 - branched-chain alpha-keto acid dehydrogenase complex, beta subunit, at 4,993,317 to 4,994,336
_4402
PP_4403: PP_4403 - Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, at 4,994,337 to 4,995,608
_4403
PP_4404: PP_4404 - dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex, at 4,995,611 to 4,996,990
_4404
Position (kb)
4994
4995
4996 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 4993.420 kb on - strand, within PP_4402 at 4993.420 kb on - strand, within PP_4402 at 4993.465 kb on - strand, within PP_4402 at 4993.578 kb on + strand, within PP_4402 at 4993.578 kb on + strand, within PP_4402 at 4993.578 kb on + strand, within PP_4402 at 4993.579 kb on - strand, within PP_4402 at 4993.579 kb on - strand, within PP_4402 at 4993.692 kb on + strand, within PP_4402 at 4993.692 kb on + strand, within PP_4402 at 4993.692 kb on + strand, within PP_4402 at 4993.692 kb on + strand, within PP_4402 at 4993.692 kb on + strand, within PP_4402 at 4993.693 kb on - strand, within PP_4402 at 4993.693 kb on - strand, within PP_4402 at 4993.693 kb on - strand, within PP_4402 at 4993.776 kb on + strand, within PP_4402 at 4993.777 kb on - strand, within PP_4402 at 4993.777 kb on - strand, within PP_4402 at 4993.777 kb on - strand, within PP_4402 at 4993.851 kb on + strand, within PP_4402 at 4993.852 kb on - strand, within PP_4402 at 4993.852 kb on - strand, within PP_4402 at 4993.852 kb on - strand, within PP_4402 at 4993.889 kb on - strand, within PP_4402 at 4993.932 kb on + strand, within PP_4402 at 4993.935 kb on + strand, within PP_4402 at 4993.935 kb on + strand, within PP_4402 at 4993.936 kb on - strand, within PP_4402 at 4993.942 kb on + strand, within PP_4402 at 4993.998 kb on + strand, within PP_4402 at 4993.999 kb on - strand, within PP_4402 at 4994.013 kb on + strand, within PP_4402 at 4994.014 kb on - strand, within PP_4402 at 4994.014 kb on - strand, within PP_4402 at 4994.100 kb on - strand, within PP_4402 at 4994.280 kb on + strand at 4994.668 kb on + strand, within PP_4403 at 4994.799 kb on + strand, within PP_4403 at 4994.799 kb on + strand, within PP_4403 at 4994.800 kb on - strand, within PP_4403 at 4994.800 kb on - strand, within PP_4403 at 4994.800 kb on - strand, within PP_4403 at 4994.829 kb on - strand, within PP_4403 at 4994.898 kb on + strand, within PP_4403 at 4994.899 kb on - strand, within PP_4403 at 4995.000 kb on + strand, within PP_4403 at 4995.000 kb on + strand, within PP_4403 at 4995.001 kb on - strand, within PP_4403 at 4995.001 kb on - strand, within PP_4403 at 4995.153 kb on + strand, within PP_4403 at 4995.153 kb on + strand, within PP_4403 at 4995.154 kb on - strand, within PP_4403 at 4995.314 kb on + strand, within PP_4403 at 4995.315 kb on - strand, within PP_4403 at 4995.315 kb on - strand, within PP_4403 at 4995.564 kb on + strand at 4995.565 kb on + strand at 4995.566 kb on - strand at 4995.623 kb on - strand at 4995.631 kb on + strand at 4995.632 kb on - strand at 4995.665 kb on + strand at 4995.665 kb on + strand at 4995.666 kb on - strand at 4995.666 kb on - strand at 4995.666 kb on - strand at 4995.669 kb on + strand at 4995.669 kb on + strand at 4995.669 kb on + strand at 4995.669 kb on + strand at 4995.669 kb on + strand at 4995.670 kb on - strand at 4995.670 kb on - strand at 4995.670 kb on - strand at 4995.670 kb on - strand at 4995.670 kb on - strand at 4995.670 kb on - strand at 4995.704 kb on - strand at 4995.814 kb on + strand, within PP_4404 at 4995.973 kb on - strand, within PP_4404 at 4996.063 kb on + strand, within PP_4404 at 4996.063 kb on + strand, within PP_4404 at 4996.063 kb on + strand, within PP_4404 at 4996.064 kb on - strand at 4996.064 kb on - strand, within PP_4404 at 4996.154 kb on + strand, within PP_4404 at 4996.154 kb on + strand, within PP_4404 at 4996.156 kb on + strand, within PP_4404 at 4996.182 kb on - strand, within PP_4404 at 4996.182 kb on - strand, within PP_4404 at 4996.241 kb on + strand, within PP_4404 at 4996.241 kb on + strand, within PP_4404 at 4996.293 kb on + strand, within PP_4404 at 4996.294 kb on - strand, within PP_4404 at 4996.294 kb on - strand, within PP_4404 at 4996.392 kb on + strand, within PP_4404 at 4996.392 kb on + strand, within PP_4404 at 4996.392 kb on + strand, within PP_4404 at 4996.393 kb on - strand, within PP_4404 at 4996.393 kb on - strand, within PP_4404
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 4,993,420 - PP_4402 0.10 -2.1 4,993,420 - PP_4402 0.10 -0.5 4,993,465 - PP_4402 0.15 -2.8 4,993,578 + PP_4402 0.26 -4.3 4,993,578 + PP_4402 0.26 -1.9 4,993,578 + PP_4402 0.26 -4.7 4,993,579 - PP_4402 0.26 -3.0 4,993,579 - PP_4402 0.26 -3.3 4,993,692 + PP_4402 0.37 -4.1 4,993,692 + PP_4402 0.37 -3.4 4,993,692 + PP_4402 0.37 -4.7 4,993,692 + PP_4402 0.37 -4.1 4,993,692 + PP_4402 0.37 -2.4 4,993,693 - PP_4402 0.37 -4.9 4,993,693 - PP_4402 0.37 -1.4 4,993,693 - PP_4402 0.37 -4.1 4,993,776 + PP_4402 0.45 -2.9 4,993,777 - PP_4402 0.45 -3.9 4,993,777 - PP_4402 0.45 -2.6 4,993,777 - PP_4402 0.45 -4.4 4,993,851 + PP_4402 0.52 -2.6 4,993,852 - PP_4402 0.52 +0.1 4,993,852 - PP_4402 0.52 -4.0 4,993,852 - PP_4402 0.52 -4.0 4,993,889 - PP_4402 0.56 -3.8 4,993,932 + PP_4402 0.60 -4.2 4,993,935 + PP_4402 0.61 -3.0 4,993,935 + PP_4402 0.61 -4.3 4,993,936 - PP_4402 0.61 -3.5 4,993,942 + PP_4402 0.61 -4.7 4,993,998 + PP_4402 0.67 -4.6 4,993,999 - PP_4402 0.67 -4.3 4,994,013 + PP_4402 0.68 -5.3 4,994,014 - PP_4402 0.68 -2.8 4,994,014 - PP_4402 0.68 +1.1 4,994,100 - PP_4402 0.77 -1.2 4,994,280 + -3.2 4,994,668 + PP_4403 0.26 -4.9 4,994,799 + PP_4403 0.36 -4.0 4,994,799 + PP_4403 0.36 -3.9 4,994,800 - PP_4403 0.36 -3.2 4,994,800 - PP_4403 0.36 -3.2 4,994,800 - PP_4403 0.36 -4.6 4,994,829 - PP_4403 0.39 -3.8 4,994,898 + PP_4403 0.44 -4.4 4,994,899 - PP_4403 0.44 -5.1 4,995,000 + PP_4403 0.52 -3.5 4,995,000 + PP_4403 0.52 -5.1 4,995,001 - PP_4403 0.52 -5.2 4,995,001 - PP_4403 0.52 -2.6 4,995,153 + PP_4403 0.64 -2.3 4,995,153 + PP_4403 0.64 -0.4 4,995,154 - PP_4403 0.64 -1.1 4,995,314 + PP_4403 0.77 -4.2 4,995,315 - PP_4403 0.77 -3.9 4,995,315 - PP_4403 0.77 -0.2 4,995,564 + -2.2 4,995,565 + -3.9 4,995,566 - -3.7 4,995,623 - -1.2 4,995,631 + -1.9 4,995,632 - -0.7 4,995,665 + -0.1 4,995,665 + -2.5 4,995,666 - -4.2 4,995,666 - -2.3 4,995,666 - +0.3 4,995,669 + -2.7 4,995,669 + -1.0 4,995,669 + -4.4 4,995,669 + -2.0 4,995,669 + -0.1 4,995,670 - -4.2 4,995,670 - -0.5 4,995,670 - -4.3 4,995,670 - -3.3 4,995,670 - -0.2 4,995,670 - -0.9 4,995,704 - -2.7 4,995,814 + PP_4404 0.15 +0.1 4,995,973 - PP_4404 0.26 -4.1 4,996,063 + PP_4404 0.33 -0.9 4,996,063 + PP_4404 0.33 -3.2 4,996,063 + PP_4404 0.33 -0.3 4,996,064 - -0.6 4,996,064 - PP_4404 0.33 +0.5 4,996,154 + PP_4404 0.39 +0.0 4,996,154 + PP_4404 0.39 +0.4 4,996,156 + PP_4404 0.39 +0.9 4,996,182 - PP_4404 0.41 +0.5 4,996,182 - PP_4404 0.41 -1.8 4,996,241 + PP_4404 0.46 -4.3 4,996,241 + PP_4404 0.46 -0.5 4,996,293 + PP_4404 0.49 -0.5 4,996,294 - PP_4404 0.49 -1.5 4,996,294 - PP_4404 0.49 +0.4 4,996,392 + PP_4404 0.57 -0.3 4,996,392 + PP_4404 0.57 -1.7 4,996,392 + PP_4404 0.57 -1.7 4,996,393 - PP_4404 0.57 -0.9 4,996,393 - PP_4404 0.57 +0.9
Or see this region's nucleotide sequence