Strain Fitness in Pseudomonas putida KT2440 around PP_0679

Experiment: Butyl stearate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0678 and PP_0679 are separated by 71 nucleotidesPP_0679 and PP_0680 are separated by 223 nucleotides PP_0678: PP_0678 - conserved exported protein of unknown function, at 791,195 to 793,048 _0678 PP_0679: PP_0679 - conserved exported protein of unknown function, at 793,120 to 793,635 _0679 PP_0680: PP_0680 - ATP-dependent protease-like protein, at 793,859 to 796,297 _0680 Position (kb) 793 794Strain fitness (log2 ratio) -2 -1 0 1 2at 792.279 kb on + strand, within PP_0678at 792.280 kb on - strand, within PP_0678at 792.349 kb on + strand, within PP_0678at 792.350 kb on - strand, within PP_0678at 792.417 kb on + strand, within PP_0678at 792.417 kb on + strand, within PP_0678at 792.492 kb on + strand, within PP_0678at 792.518 kb on + strand, within PP_0678at 792.522 kb on + strand, within PP_0678at 792.523 kb on - strandat 792.523 kb on - strand, within PP_0678at 792.523 kb on - strand, within PP_0678at 792.523 kb on - strand, within PP_0678at 792.543 kb on + strand, within PP_0678at 792.543 kb on + strand, within PP_0678at 792.544 kb on - strand, within PP_0678at 792.544 kb on - strand, within PP_0678at 792.633 kb on + strand, within PP_0678at 792.633 kb on + strand, within PP_0678at 792.633 kb on + strand, within PP_0678at 792.767 kb on + strand, within PP_0678at 792.768 kb on - strand, within PP_0678at 792.768 kb on - strand, within PP_0678at 792.807 kb on + strand, within PP_0678at 792.807 kb on + strand, within PP_0678at 792.807 kb on + strand, within PP_0678at 792.808 kb on - strandat 792.808 kb on - strand, within PP_0678at 792.808 kb on - strand, within PP_0678at 792.891 kb on + strandat 792.891 kb on + strandat 792.891 kb on + strandat 792.891 kb on + strandat 792.892 kb on - strandat 792.892 kb on - strandat 792.924 kb on + strandat 792.924 kb on + strandat 792.925 kb on - strandat 792.925 kb on - strandat 793.059 kb on + strandat 793.060 kb on - strandat 793.121 kb on + strandat 793.121 kb on + strandat 793.121 kb on + strandat 793.121 kb on + strandat 793.122 kb on - strandat 793.132 kb on - strandat 793.136 kb on + strandat 793.136 kb on + strandat 793.136 kb on + strandat 793.137 kb on - strandat 793.137 kb on - strandat 793.137 kb on - strandat 793.137 kb on - strandat 793.137 kb on - strandat 793.257 kb on - strand, within PP_0679at 793.257 kb on - strand, within PP_0679at 793.276 kb on + strand, within PP_0679at 793.295 kb on + strand, within PP_0679at 793.295 kb on + strand, within PP_0679at 793.295 kb on + strand, within PP_0679at 793.295 kb on + strand, within PP_0679at 793.296 kb on - strand, within PP_0679at 793.296 kb on - strand, within PP_0679at 793.296 kb on - strand, within PP_0679at 793.296 kb on - strand, within PP_0679at 793.296 kb on - strand, within PP_0679at 793.385 kb on + strand, within PP_0679at 793.386 kb on - strand, within PP_0679at 793.467 kb on + strand, within PP_0679at 793.608 kb on + strandat 793.608 kb on + strandat 793.609 kb on - strandat 793.609 kb on - strandat 793.777 kb on + strandat 793.777 kb on + strandat 793.777 kb on + strandat 793.777 kb on + strandat 793.778 kb on - strandat 793.778 kb on - strandat 793.778 kb on - strandat 793.830 kb on + strandat 793.831 kb on - strandat 793.831 kb on - strandat 793.847 kb on + strandat 793.847 kb on + strandat 793.939 kb on + strandat 794.037 kb on - strandat 794.045 kb on + strandat 794.045 kb on + strandat 794.045 kb on + strandat 794.046 kb on - strandat 794.046 kb on - strandat 794.046 kb on - strandat 794.142 kb on - strand, within PP_0680at 794.142 kb on - strand, within PP_0680at 794.282 kb on + strand, within PP_0680at 794.327 kb on + strand, within PP_0680at 794.328 kb on - strand, within PP_0680at 794.328 kb on - strand, within PP_0680at 794.328 kb on - strand, within PP_0680at 794.328 kb on - strand, within PP_0680at 794.328 kb on - strand, within PP_0680at 794.384 kb on + strand, within PP_0680

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Per-strain Table

Position Strand Gene LocusTag Fraction Butyl stearate (C)
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792,279 + PP_0678 0.58 +0.5
792,280 - PP_0678 0.59 -0.0
792,349 + PP_0678 0.62 +0.8
792,350 - PP_0678 0.62 +0.4
792,417 + PP_0678 0.66 -0.2
792,417 + PP_0678 0.66 +1.5
792,492 + PP_0678 0.70 +0.0
792,518 + PP_0678 0.71 +0.2
792,522 + PP_0678 0.72 +0.3
792,523 - -0.3
792,523 - PP_0678 0.72 +0.7
792,523 - PP_0678 0.72 -0.2
792,523 - PP_0678 0.72 +0.9
792,543 + PP_0678 0.73 +1.1
792,543 + PP_0678 0.73 +0.5
792,544 - PP_0678 0.73 +1.1
792,544 - PP_0678 0.73 -0.4
792,633 + PP_0678 0.78 +0.8
792,633 + PP_0678 0.78 +0.4
792,633 + PP_0678 0.78 +0.4
792,767 + PP_0678 0.85 -0.4
792,768 - PP_0678 0.85 +1.0
792,768 - PP_0678 0.85 +0.6
792,807 + PP_0678 0.87 +0.7
792,807 + PP_0678 0.87 +0.4
792,807 + PP_0678 0.87 -0.7
792,808 - -0.6
792,808 - PP_0678 0.87 +0.4
792,808 - PP_0678 0.87 +0.5
792,891 + -0.1
792,891 + +0.0
792,891 + +0.1
792,891 + +0.6
792,892 - +0.9
792,892 - -0.6
792,924 + +0.0
792,924 + +0.2
792,925 - -0.4
792,925 - +0.3
793,059 + -0.0
793,060 - -1.3
793,121 + +1.8
793,121 + +0.7
793,121 + -0.0
793,121 + +0.2
793,122 - -0.4
793,132 - -2.2
793,136 + +0.4
793,136 + -0.4
793,136 + +0.6
793,137 - -0.3
793,137 - +0.0
793,137 - +0.5
793,137 - +0.5
793,137 - -0.2
793,257 - PP_0679 0.27 +0.2
793,257 - PP_0679 0.27 -0.9
793,276 + PP_0679 0.30 +2.4
793,295 + PP_0679 0.34 +1.3
793,295 + PP_0679 0.34 +1.3
793,295 + PP_0679 0.34 +0.7
793,295 + PP_0679 0.34 +0.1
793,296 - PP_0679 0.34 +0.4
793,296 - PP_0679 0.34 +0.0
793,296 - PP_0679 0.34 +0.3
793,296 - PP_0679 0.34 -2.4
793,296 - PP_0679 0.34 -1.1
793,385 + PP_0679 0.51 +1.7
793,386 - PP_0679 0.52 +1.5
793,467 + PP_0679 0.67 +1.2
793,608 + +0.1
793,608 + +0.8
793,609 - -0.1
793,609 - -0.8
793,777 + +0.1
793,777 + -0.9
793,777 + -0.4
793,777 + -1.1
793,778 - +0.5
793,778 - +0.2
793,778 - +0.1
793,830 + -0.5
793,831 - -0.1
793,831 - -0.1
793,847 + +0.4
793,847 + +0.3
793,939 + -1.1
794,037 - +0.4
794,045 + +0.2
794,045 + -0.1
794,045 + +0.4
794,046 - +0.8
794,046 - +0.2
794,046 - +0.5
794,142 - PP_0680 0.12 +1.1
794,142 - PP_0680 0.12 -0.0
794,282 + PP_0680 0.17 +0.5
794,327 + PP_0680 0.19 +0.6
794,328 - PP_0680 0.19 +0.4
794,328 - PP_0680 0.19 -0.2
794,328 - PP_0680 0.19 +0.4
794,328 - PP_0680 0.19 +0.0
794,328 - PP_0680 0.19 -0.2
794,384 + PP_0680 0.22 -0.7

Or see this region's nucleotide sequence