Strain Fitness in Pseudomonas putida KT2440 around PP_4954

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4953 and PP_4954 are separated by 128 nucleotidesPP_4954 and PP_4955 are separated by 18 nucleotidesPP_4955 and PP_4956 are separated by 153 nucleotides PP_4953: PP_4953 - putative oxidoreductase with FAD/NAD(P)-binding domain, at 5,643,338 to 5,644,519 _4953 PP_4954: PP_4954 - conserved membrane protein of unknown function, at 5,644,648 to 5,646,831 _4954 PP_4955: PP_4955 - conserved exported protein of unknown function, at 5,646,850 to 5,647,587 _4955 PP_4956: PP_4956 - putative acyltransferase, at 5,647,741 to 5,648,193 _4956 Position (kb) 5644 5645 5646 5647Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5644.259 kb on + strand, within PP_4953at 5644.259 kb on + strand, within PP_4953at 5644.259 kb on + strand, within PP_4953at 5644.311 kb on + strand, within PP_4953at 5644.311 kb on + strand, within PP_4953at 5644.311 kb on + strand, within PP_4953at 5644.312 kb on - strand, within PP_4953at 5644.312 kb on - strand, within PP_4953at 5644.421 kb on + strandat 5644.421 kb on + strandat 5644.422 kb on - strandat 5644.518 kb on - strandat 5644.522 kb on + strandat 5644.522 kb on + strandat 5644.523 kb on - strandat 5644.523 kb on - strandat 5644.523 kb on - strandat 5644.576 kb on + strandat 5644.617 kb on + strandat 5644.617 kb on + strandat 5644.708 kb on + strandat 5644.708 kb on + strandat 5644.708 kb on + strandat 5644.708 kb on + strandat 5644.760 kb on - strandat 5644.760 kb on - strandat 5644.910 kb on + strand, within PP_4954at 5644.910 kb on + strand, within PP_4954at 5644.911 kb on - strand, within PP_4954at 5644.911 kb on - strand, within PP_4954at 5645.032 kb on + strand, within PP_4954at 5645.033 kb on - strand, within PP_4954at 5645.033 kb on - strand, within PP_4954at 5645.209 kb on + strand, within PP_4954at 5645.210 kb on - strand, within PP_4954at 5645.373 kb on - strand, within PP_4954at 5645.381 kb on - strand, within PP_4954at 5645.393 kb on - strand, within PP_4954at 5645.393 kb on - strand, within PP_4954at 5645.443 kb on + strand, within PP_4954at 5645.959 kb on + strand, within PP_4954at 5645.959 kb on + strand, within PP_4954at 5645.960 kb on - strand, within PP_4954at 5645.960 kb on - strand, within PP_4954at 5645.960 kb on - strand, within PP_4954at 5646.118 kb on + strand, within PP_4954at 5646.119 kb on - strand, within PP_4954at 5646.184 kb on + strand, within PP_4954at 5646.303 kb on + strand, within PP_4954at 5646.304 kb on - strand, within PP_4954at 5646.325 kb on + strand, within PP_4954at 5646.326 kb on - strand, within PP_4954at 5646.326 kb on - strand, within PP_4954at 5646.350 kb on - strand, within PP_4954at 5646.350 kb on - strand, within PP_4954at 5646.350 kb on - strand, within PP_4954at 5646.350 kb on - strand, within PP_4954at 5646.350 kb on - strand, within PP_4954at 5646.468 kb on + strand, within PP_4954at 5646.523 kb on + strand, within PP_4954at 5646.523 kb on + strand, within PP_4954at 5646.523 kb on + strand, within PP_4954at 5646.764 kb on + strandat 5646.861 kb on - strandat 5646.881 kb on + strandat 5646.881 kb on + strandat 5646.881 kb on + strandat 5646.882 kb on - strandat 5646.882 kb on - strandat 5646.882 kb on - strandat 5646.882 kb on - strandat 5646.969 kb on + strand, within PP_4955at 5646.970 kb on - strand, within PP_4955at 5647.061 kb on + strand, within PP_4955at 5647.084 kb on + strand, within PP_4955at 5647.109 kb on - strand, within PP_4955at 5647.109 kb on - strand, within PP_4955at 5647.203 kb on + strand, within PP_4955at 5647.203 kb on + strand, within PP_4955at 5647.203 kb on + strand, within PP_4955at 5647.203 kb on + strand, within PP_4955at 5647.203 kb on + strand, within PP_4955at 5647.203 kb on + strand, within PP_4955at 5647.203 kb on + strand, within PP_4955at 5647.204 kb on - strand, within PP_4955at 5647.204 kb on - strand, within PP_4955at 5647.205 kb on + strand, within PP_4955at 5647.205 kb on + strand, within PP_4955at 5647.205 kb on + strand, within PP_4955at 5647.205 kb on + strand, within PP_4955at 5647.205 kb on + strand, within PP_4955at 5647.206 kb on - strand, within PP_4955at 5647.206 kb on - strand, within PP_4955at 5647.206 kb on - strand, within PP_4955at 5647.211 kb on + strand, within PP_4955at 5647.211 kb on + strand, within PP_4955at 5647.232 kb on + strand, within PP_4955at 5647.232 kb on + strand, within PP_4955at 5647.233 kb on - strand, within PP_4955at 5647.236 kb on + strand, within PP_4955at 5647.237 kb on - strand, within PP_4955at 5647.237 kb on - strand, within PP_4955at 5647.270 kb on - strand, within PP_4955at 5647.275 kb on + strand, within PP_4955at 5647.275 kb on + strand, within PP_4955at 5647.276 kb on - strand, within PP_4955at 5647.283 kb on + strand, within PP_4955at 5647.325 kb on + strand, within PP_4955at 5647.326 kb on - strand, within PP_4955at 5647.326 kb on - strand, within PP_4955at 5647.326 kb on - strand, within PP_4955at 5647.326 kb on - strand, within PP_4955at 5647.437 kb on + strand, within PP_4955at 5647.498 kb on - strand, within PP_4955at 5647.513 kb on + strand, within PP_4955at 5647.513 kb on + strand, within PP_4955at 5647.513 kb on + strand, within PP_4955at 5647.631 kb on + strandat 5647.663 kb on + strandat 5647.663 kb on + strandat 5647.663 kb on + strandat 5647.663 kb on + strandat 5647.663 kb on + strandat 5647.664 kb on - strandat 5647.673 kb on + strandat 5647.796 kb on - strand, within PP_4956at 5647.796 kb on - strand, within PP_4956at 5647.796 kb on - strand, within PP_4956at 5647.796 kb on - strand, within PP_4956at 5647.811 kb on + strand, within PP_4956at 5647.811 kb on + strand, within PP_4956at 5647.811 kb on + strand, within PP_4956at 5647.811 kb on + strand, within PP_4956at 5647.812 kb on - strand, within PP_4956at 5647.812 kb on - strand, within PP_4956

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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5,644,259 + PP_4953 0.78 +0.9
5,644,259 + PP_4953 0.78 +0.2
5,644,259 + PP_4953 0.78 -1.3
5,644,311 + PP_4953 0.82 +0.9
5,644,311 + PP_4953 0.82 -1.0
5,644,311 + PP_4953 0.82 +0.3
5,644,312 - PP_4953 0.82 +1.2
5,644,312 - PP_4953 0.82 +0.1
5,644,421 + -0.1
5,644,421 + -0.1
5,644,422 - +0.3
5,644,518 - -0.5
5,644,522 + -1.2
5,644,522 + +1.5
5,644,523 - -0.2
5,644,523 - -0.7
5,644,523 - -0.7
5,644,576 + +0.3
5,644,617 + +0.4
5,644,617 + -0.4
5,644,708 + +0.3
5,644,708 + +0.4
5,644,708 + -3.4
5,644,708 + +1.5
5,644,760 - -0.2
5,644,760 - -1.8
5,644,910 + PP_4954 0.12 +0.9
5,644,910 + PP_4954 0.12 -0.1
5,644,911 - PP_4954 0.12 +0.7
5,644,911 - PP_4954 0.12 -0.4
5,645,032 + PP_4954 0.18 -1.2
5,645,033 - PP_4954 0.18 +0.3
5,645,033 - PP_4954 0.18 +0.1
5,645,209 + PP_4954 0.26 +0.9
5,645,210 - PP_4954 0.26 +0.4
5,645,373 - PP_4954 0.33 +0.3
5,645,381 - PP_4954 0.34 -3.1
5,645,393 - PP_4954 0.34 -0.1
5,645,393 - PP_4954 0.34 -0.3
5,645,443 + PP_4954 0.36 -0.2
5,645,959 + PP_4954 0.60 -1.6
5,645,959 + PP_4954 0.60 -1.2
5,645,960 - PP_4954 0.60 -2.2
5,645,960 - PP_4954 0.60 -1.9
5,645,960 - PP_4954 0.60 -1.0
5,646,118 + PP_4954 0.67 -1.1
5,646,119 - PP_4954 0.67 -1.9
5,646,184 + PP_4954 0.70 +1.0
5,646,303 + PP_4954 0.76 -1.4
5,646,304 - PP_4954 0.76 -0.9
5,646,325 + PP_4954 0.77 +0.2
5,646,326 - PP_4954 0.77 -1.0
5,646,326 - PP_4954 0.77 +0.6
5,646,350 - PP_4954 0.78 -0.3
5,646,350 - PP_4954 0.78 +1.0
5,646,350 - PP_4954 0.78 -2.9
5,646,350 - PP_4954 0.78 -0.7
5,646,350 - PP_4954 0.78 -1.6
5,646,468 + PP_4954 0.83 -1.9
5,646,523 + PP_4954 0.86 -0.6
5,646,523 + PP_4954 0.86 +0.0
5,646,523 + PP_4954 0.86 -1.9
5,646,764 + -0.5
5,646,861 - -0.8
5,646,881 + -2.6
5,646,881 + -2.4
5,646,881 + +0.6
5,646,882 - +0.4
5,646,882 - -1.3
5,646,882 - -1.4
5,646,882 - -0.7
5,646,969 + PP_4955 0.16 +0.2
5,646,970 - PP_4955 0.16 +0.4
5,647,061 + PP_4955 0.29 -0.4
5,647,084 + PP_4955 0.32 -2.4
5,647,109 - PP_4955 0.35 -1.3
5,647,109 - PP_4955 0.35 -1.5
5,647,203 + PP_4955 0.48 -1.8
5,647,203 + PP_4955 0.48 -1.0
5,647,203 + PP_4955 0.48 -1.9
5,647,203 + PP_4955 0.48 +2.0
5,647,203 + PP_4955 0.48 -0.3
5,647,203 + PP_4955 0.48 +0.0
5,647,203 + PP_4955 0.48 -1.7
5,647,204 - PP_4955 0.48 -3.3
5,647,204 - PP_4955 0.48 -2.5
5,647,205 + PP_4955 0.48 +1.0
5,647,205 + PP_4955 0.48 +1.0
5,647,205 + PP_4955 0.48 +1.7
5,647,205 + PP_4955 0.48 -1.6
5,647,205 + PP_4955 0.48 -1.4
5,647,206 - PP_4955 0.48 +0.3
5,647,206 - PP_4955 0.48 -0.5
5,647,206 - PP_4955 0.48 +0.8
5,647,211 + PP_4955 0.49 -0.2
5,647,211 + PP_4955 0.49 +0.4
5,647,232 + PP_4955 0.52 -0.8
5,647,232 + PP_4955 0.52 +0.9
5,647,233 - PP_4955 0.52 -0.3
5,647,236 + PP_4955 0.52 +0.2
5,647,237 - PP_4955 0.52 -0.5
5,647,237 - PP_4955 0.52 +0.3
5,647,270 - PP_4955 0.57 +3.0
5,647,275 + PP_4955 0.58 +0.7
5,647,275 + PP_4955 0.58 +0.2
5,647,276 - PP_4955 0.58 +3.0
5,647,283 + PP_4955 0.59 -0.7
5,647,325 + PP_4955 0.64 -0.2
5,647,326 - PP_4955 0.64 +0.5
5,647,326 - PP_4955 0.64 +0.2
5,647,326 - PP_4955 0.64 +0.8
5,647,326 - PP_4955 0.64 -0.9
5,647,437 + PP_4955 0.80 -0.3
5,647,498 - PP_4955 0.88 +0.5
5,647,513 + PP_4955 0.90 -0.5
5,647,513 + PP_4955 0.90 -1.3
5,647,513 + PP_4955 0.90 -0.1
5,647,631 + -0.2
5,647,663 + +0.1
5,647,663 + +0.1
5,647,663 + +0.9
5,647,663 + -0.8
5,647,663 + +1.5
5,647,664 - -0.1
5,647,673 + -0.5
5,647,796 - PP_4956 0.12 -0.3
5,647,796 - PP_4956 0.12 -0.3
5,647,796 - PP_4956 0.12 +0.3
5,647,796 - PP_4956 0.12 +0.7
5,647,811 + PP_4956 0.15 +0.6
5,647,811 + PP_4956 0.15 +0.1
5,647,811 + PP_4956 0.15 -0.5
5,647,811 + PP_4956 0.15 +0.7
5,647,812 - PP_4956 0.16 +0.3
5,647,812 - PP_4956 0.16 +0.4

Or see this region's nucleotide sequence