Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4697 and PP_4698 overlap by 4 nucleotides PP_4698 and PP_4699 are separated by 262 nucleotides
PP_4697: PP_4697 - poly(A) polymerase, at 5,338,773 to 5,340,155
_4697
PP_4698: PP_4698 - 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, at 5,340,152 to 5,340,631
_4698
PP_4699: PP_4699 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 5,340,894 to 5,341,694
_4699
Position (kb) 5340
5341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5339.262 kb on + strand, within PP_4697 at 5339.265 kb on + strand, within PP_4697 at 5339.265 kb on + strand, within PP_4697 at 5339.265 kb on + strand, within PP_4697 at 5339.265 kb on + strand, within PP_4697 at 5339.439 kb on + strand, within PP_4697 at 5339.439 kb on + strand, within PP_4697 at 5339.439 kb on + strand, within PP_4697 at 5339.952 kb on + strand, within PP_4697 at 5340.167 kb on + strand at 5340.167 kb on + strand at 5340.629 kb on + strand at 5340.629 kb on + strand at 5340.630 kb on - strand at 5340.674 kb on - strand at 5340.674 kb on - strand at 5340.674 kb on - strand at 5340.687 kb on + strand at 5340.735 kb on + strand at 5340.735 kb on + strand at 5340.735 kb on + strand at 5340.735 kb on + strand at 5340.737 kb on + strand at 5340.737 kb on + strand at 5340.738 kb on - strand at 5340.738 kb on - strand at 5340.738 kb on - strand at 5340.738 kb on - strand at 5340.738 kb on - strand at 5340.769 kb on - strand at 5340.769 kb on - strand at 5340.840 kb on + strand at 5340.841 kb on - strand at 5340.841 kb on - strand at 5340.841 kb on - strand at 5340.841 kb on - strand at 5340.841 kb on - strand at 5340.891 kb on + strand at 5340.891 kb on + strand at 5340.892 kb on - strand at 5340.904 kb on + strand at 5340.905 kb on - strand at 5340.911 kb on + strand at 5340.911 kb on + strand at 5340.911 kb on + strand at 5340.912 kb on - strand at 5340.966 kb on + strand at 5340.966 kb on + strand at 5340.966 kb on + strand at 5340.966 kb on + strand at 5341.092 kb on + strand, within PP_4699 at 5341.093 kb on - strand, within PP_4699 at 5341.285 kb on + strand, within PP_4699 at 5341.285 kb on + strand, within PP_4699 at 5341.341 kb on + strand, within PP_4699 at 5341.442 kb on - strand, within PP_4699 at 5341.528 kb on + strand, within PP_4699 at 5341.528 kb on + strand, within PP_4699 at 5341.528 kb on + strand, within PP_4699 at 5341.528 kb on + strand, within PP_4699 at 5341.529 kb on - strand, within PP_4699 at 5341.534 kb on + strand, within PP_4699 at 5341.535 kb on - strand, within PP_4699 at 5341.615 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 5,339,262 + PP_4697 0.35 +1.0 5,339,265 + PP_4697 0.36 +0.0 5,339,265 + PP_4697 0.36 -2.6 5,339,265 + PP_4697 0.36 -0.1 5,339,265 + PP_4697 0.36 +0.6 5,339,439 + PP_4697 0.48 -2.4 5,339,439 + PP_4697 0.48 -0.3 5,339,439 + PP_4697 0.48 -0.1 5,339,952 + PP_4697 0.85 +1.1 5,340,167 + -1.3 5,340,167 + -2.1 5,340,629 + -0.4 5,340,629 + -0.5 5,340,630 - +1.4 5,340,674 - +0.2 5,340,674 - +0.5 5,340,674 - +0.1 5,340,687 + -1.7 5,340,735 + +0.8 5,340,735 + -0.2 5,340,735 + -3.1 5,340,735 + +0.7 5,340,737 + +2.0 5,340,737 + -0.9 5,340,738 - -1.3 5,340,738 - +0.5 5,340,738 - -1.8 5,340,738 - -0.9 5,340,738 - -0.3 5,340,769 - -3.0 5,340,769 - -1.4 5,340,840 + +0.5 5,340,841 - -1.3 5,340,841 - -1.1 5,340,841 - -2.8 5,340,841 - -2.3 5,340,841 - +0.5 5,340,891 + -1.8 5,340,891 + -1.2 5,340,892 - -2.8 5,340,904 + -1.7 5,340,905 - -2.3 5,340,911 + -1.7 5,340,911 + -1.0 5,340,911 + -1.1 5,340,912 - -3.5 5,340,966 + +2.0 5,340,966 + -2.2 5,340,966 + +0.5 5,340,966 + -3.0 5,341,092 + PP_4699 0.25 -2.0 5,341,093 - PP_4699 0.25 -1.9 5,341,285 + PP_4699 0.49 -2.3 5,341,285 + PP_4699 0.49 -3.7 5,341,341 + PP_4699 0.56 +0.5 5,341,442 - PP_4699 0.68 -0.3 5,341,528 + PP_4699 0.79 -2.9 5,341,528 + PP_4699 0.79 -3.1 5,341,528 + PP_4699 0.79 -2.1 5,341,528 + PP_4699 0.79 -1.7 5,341,529 - PP_4699 0.79 -0.3 5,341,534 + PP_4699 0.80 -1.3 5,341,535 - PP_4699 0.80 -1.1 5,341,615 + -0.3
Or see this region's nucleotide sequence