Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0672 and PP_0673 are separated by 221 nucleotides PP_0673 and PP_0674 are separated by 304 nucleotides PP_0674 and PP_0675 are separated by 212 nucleotides
PP_0672: PP_0672 - Sensory box protein, at 782,095 to 785,925
_0672
PP_0673: PP_0673 - conserved protein of unknown function, at 786,147 to 786,578
_0673
PP_0674: PP_0674 - ADP/ATP ratio sensor and inhibitor of translation, at 786,883 to 788,550
_0674
PP_0675: PP_0675 - glutamate dehydrogenase, NADP-dependent, at 788,763 to 790,112
_0675
Position (kb) 786
787
788
789 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 785.913 kb on + strand at 785.913 kb on + strand at 785.913 kb on + strand at 785.913 kb on + strand at 786.015 kb on + strand at 786.015 kb on + strand at 786.015 kb on + strand at 786.015 kb on + strand at 786.016 kb on - strand at 786.016 kb on - strand at 786.016 kb on - strand at 786.017 kb on + strand at 786.017 kb on + strand at 786.017 kb on + strand at 786.017 kb on + strand at 786.018 kb on - strand at 786.018 kb on - strand at 786.018 kb on - strand at 786.018 kb on - strand at 786.018 kb on - strand at 786.042 kb on - strand at 786.042 kb on - strand at 786.056 kb on + strand at 786.262 kb on + strand, within PP_0673 at 786.263 kb on - strand, within PP_0673 at 786.263 kb on - strand, within PP_0673 at 786.754 kb on + strand at 786.754 kb on + strand at 786.754 kb on + strand at 786.754 kb on + strand at 786.755 kb on - strand at 786.755 kb on - strand at 786.755 kb on - strand at 786.755 kb on - strand at 786.809 kb on - strand at 786.857 kb on + strand at 786.857 kb on + strand at 786.858 kb on - strand at 786.858 kb on - strand at 786.858 kb on - strand at 786.861 kb on + strand at 786.862 kb on - strand at 786.869 kb on + strand at 786.892 kb on + strand at 786.893 kb on - strand at 786.893 kb on - strand at 786.893 kb on - strand at 786.893 kb on - strand at 786.893 kb on - strand at 786.898 kb on + strand at 786.898 kb on + strand at 786.898 kb on + strand at 786.898 kb on + strand at 786.899 kb on - strand at 786.899 kb on - strand at 786.993 kb on - strand at 787.099 kb on + strand, within PP_0674 at 787.100 kb on - strand, within PP_0674 at 787.169 kb on + strand, within PP_0674 at 787.204 kb on + strand, within PP_0674 at 787.204 kb on + strand, within PP_0674 at 787.205 kb on - strand, within PP_0674 at 787.214 kb on - strand, within PP_0674 at 787.540 kb on + strand, within PP_0674 at 787.540 kb on + strand, within PP_0674 at 787.541 kb on - strand, within PP_0674 at 787.612 kb on + strand at 787.816 kb on + strand, within PP_0674 at 787.816 kb on + strand, within PP_0674 at 787.816 kb on + strand, within PP_0674 at 787.816 kb on + strand, within PP_0674 at 787.879 kb on + strand, within PP_0674 at 787.965 kb on + strand, within PP_0674 at 787.966 kb on - strand, within PP_0674 at 788.039 kb on + strand, within PP_0674 at 788.039 kb on + strand, within PP_0674 at 788.140 kb on + strand, within PP_0674 at 788.141 kb on - strand, within PP_0674 at 788.141 kb on - strand, within PP_0674 at 788.141 kb on - strand, within PP_0674 at 788.157 kb on + strand, within PP_0674 at 788.157 kb on + strand, within PP_0674 at 788.161 kb on + strand, within PP_0674 at 788.161 kb on + strand, within PP_0674 at 788.161 kb on + strand, within PP_0674 at 788.161 kb on + strand, within PP_0674 at 788.161 kb on + strand, within PP_0674 at 788.161 kb on + strand, within PP_0674 at 788.161 kb on + strand, within PP_0674 at 788.162 kb on - strand, within PP_0674 at 788.162 kb on - strand, within PP_0674 at 788.162 kb on - strand, within PP_0674 at 788.162 kb on - strand, within PP_0674 at 788.162 kb on - strand, within PP_0674 at 788.457 kb on + strand at 788.458 kb on - strand at 788.461 kb on + strand at 788.461 kb on + strand at 788.461 kb on + strand at 788.461 kb on + strand at 788.462 kb on - strand at 788.462 kb on - strand at 788.462 kb on - strand at 788.462 kb on - strand at 788.525 kb on + strand at 788.618 kb on - strand at 788.653 kb on - strand at 788.721 kb on + strand at 788.721 kb on + strand at 788.722 kb on - strand at 788.722 kb on - strand at 788.742 kb on - strand at 788.898 kb on + strand, within PP_0675 at 788.898 kb on + strand, within PP_0675 at 789.036 kb on + strand, within PP_0675 at 789.036 kb on + strand, within PP_0675 at 789.228 kb on + strand, within PP_0675 at 789.256 kb on + strand, within PP_0675 at 789.257 kb on - strand, within PP_0675 at 789.313 kb on - strand, within PP_0675 at 789.313 kb on - strand, within PP_0675 at 789.313 kb on - strand, within PP_0675 at 789.367 kb on - strand, within PP_0675 at 789.414 kb on + strand, within PP_0675 at 789.415 kb on - strand, within PP_0675 at 789.452 kb on + strand, within PP_0675 at 789.501 kb on + strand, within PP_0675 at 789.502 kb on - strand, within PP_0675 at 789.502 kb on - strand, within PP_0675 at 789.502 kb on - strand, within PP_0675 at 789.512 kb on + strand, within PP_0675 at 789.512 kb on + strand, within PP_0675 at 789.513 kb on - strand, within PP_0675
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 785,913 + -0.5 785,913 + +0.1 785,913 + +0.8 785,913 + +0.5 786,015 + +0.9 786,015 + +0.6 786,015 + -0.0 786,015 + -0.3 786,016 - +0.4 786,016 - -0.2 786,016 - -0.3 786,017 + -0.5 786,017 + +0.6 786,017 + -0.3 786,017 + -0.8 786,018 - -0.1 786,018 - +0.5 786,018 - +0.9 786,018 - -0.5 786,018 - +0.0 786,042 - +0.4 786,042 - +1.6 786,056 + +1.3 786,262 + PP_0673 0.27 +0.1 786,263 - PP_0673 0.27 +0.1 786,263 - PP_0673 0.27 -3.1 786,754 + +0.2 786,754 + -1.3 786,754 + -0.2 786,754 + -1.1 786,755 - -1.8 786,755 - +0.7 786,755 - +0.9 786,755 - +0.6 786,809 - -0.3 786,857 + +0.7 786,857 + +0.4 786,858 - +0.3 786,858 - +2.1 786,858 - +1.5 786,861 + +0.4 786,862 - +0.3 786,869 + -0.1 786,892 + +1.2 786,893 - -0.0 786,893 - +0.5 786,893 - -0.0 786,893 - +0.9 786,893 - +0.3 786,898 + +0.8 786,898 + +0.9 786,898 + +0.9 786,898 + +0.4 786,899 - +0.4 786,899 - +0.3 786,993 - +1.0 787,099 + PP_0674 0.13 +0.6 787,100 - PP_0674 0.13 -0.1 787,169 + PP_0674 0.17 +0.1 787,204 + PP_0674 0.19 +0.9 787,204 + PP_0674 0.19 +1.7 787,205 - PP_0674 0.19 +0.3 787,214 - PP_0674 0.20 +0.4 787,540 + PP_0674 0.39 +1.4 787,540 + PP_0674 0.39 +0.6 787,541 - PP_0674 0.39 +1.6 787,612 + +0.3 787,816 + PP_0674 0.56 +0.5 787,816 + PP_0674 0.56 +0.7 787,816 + PP_0674 0.56 +1.1 787,816 + PP_0674 0.56 -0.5 787,879 + PP_0674 0.60 +0.3 787,965 + PP_0674 0.65 -0.3 787,966 - PP_0674 0.65 +0.3 788,039 + PP_0674 0.69 +1.0 788,039 + PP_0674 0.69 +1.4 788,140 + PP_0674 0.75 +0.6 788,141 - PP_0674 0.75 +0.7 788,141 - PP_0674 0.75 +0.7 788,141 - PP_0674 0.75 +1.1 788,157 + PP_0674 0.76 +0.3 788,157 + PP_0674 0.76 +0.5 788,161 + PP_0674 0.77 +1.1 788,161 + PP_0674 0.77 +1.5 788,161 + PP_0674 0.77 +0.1 788,161 + PP_0674 0.77 +0.9 788,161 + PP_0674 0.77 +1.1 788,161 + PP_0674 0.77 +0.9 788,161 + PP_0674 0.77 +0.9 788,162 - PP_0674 0.77 +3.3 788,162 - PP_0674 0.77 +0.8 788,162 - PP_0674 0.77 +0.4 788,162 - PP_0674 0.77 +0.7 788,162 - PP_0674 0.77 +0.9 788,457 + +0.5 788,458 - +0.6 788,461 + +0.7 788,461 + +1.7 788,461 + +0.7 788,461 + +0.2 788,462 - +0.8 788,462 - +0.3 788,462 - +0.8 788,462 - +0.5 788,525 + +0.5 788,618 - -0.3 788,653 - -0.1 788,721 + +0.8 788,721 + +0.5 788,722 - +0.4 788,722 - -0.3 788,742 - +0.3 788,898 + PP_0675 0.10 -0.2 788,898 + PP_0675 0.10 +0.9 789,036 + PP_0675 0.20 +1.2 789,036 + PP_0675 0.20 -0.2 789,228 + PP_0675 0.34 -0.3 789,256 + PP_0675 0.37 -0.7 789,257 - PP_0675 0.37 -0.3 789,313 - PP_0675 0.41 +0.9 789,313 - PP_0675 0.41 -0.4 789,313 - PP_0675 0.41 -0.3 789,367 - PP_0675 0.45 +0.1 789,414 + PP_0675 0.48 +1.0 789,415 - PP_0675 0.48 +0.4 789,452 + PP_0675 0.51 +0.0 789,501 + PP_0675 0.55 -0.3 789,502 - PP_0675 0.55 -0.4 789,502 - PP_0675 0.55 -1.2 789,502 - PP_0675 0.55 +0.5 789,512 + PP_0675 0.55 -1.1 789,512 + PP_0675 0.55 +0.1 789,513 - PP_0675 0.56 +0.5
Or see this region's nucleotide sequence