Experiment: Decanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5005 and PP_5006 are separated by 12 nucleotides PP_5006 and PP_5007 are separated by 111 nucleotides PP_5007 and PP_5008 are separated by 10 nucleotides
PP_5005: PP_5005 - Poly(3-hydroxyalkanoate) polymerase 2, at 5,702,166 to 5,703,848
_5005
PP_5006: PP_5006 - Transcriptional regulator, TetR family, at 5,703,861 to 5,704,475
_5006
PP_5007: PP_5007 - Polyhydroxyalkanoate granule-associated protein GA2, at 5,704,587 to 5,705,372
_5007
PP_5008: PP_5008 - Poly granule-associated protein, at 5,705,383 to 5,705,802
_5008
Position (kb) 5703
5704
5705 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5702.889 kb on + strand, within PP_5005 at 5702.889 kb on + strand, within PP_5005 at 5702.889 kb on + strand, within PP_5005 at 5702.889 kb on + strand, within PP_5005 at 5702.890 kb on - strand, within PP_5005 at 5702.890 kb on - strand, within PP_5005 at 5702.890 kb on - strand, within PP_5005 at 5702.890 kb on - strand, within PP_5005 at 5702.890 kb on - strand, within PP_5005 at 5702.890 kb on - strand, within PP_5005 at 5702.973 kb on + strand, within PP_5005 at 5702.973 kb on + strand, within PP_5005 at 5702.973 kb on + strand, within PP_5005 at 5702.974 kb on - strand, within PP_5005 at 5703.015 kb on - strand, within PP_5005 at 5703.132 kb on + strand, within PP_5005 at 5703.132 kb on + strand, within PP_5005 at 5703.300 kb on + strand, within PP_5005 at 5703.435 kb on + strand, within PP_5005 at 5703.436 kb on - strand, within PP_5005 at 5703.546 kb on + strand, within PP_5005 at 5703.645 kb on + strand, within PP_5005 at 5703.645 kb on + strand, within PP_5005 at 5703.648 kb on + strand, within PP_5005 at 5703.648 kb on + strand, within PP_5005 at 5703.648 kb on + strand, within PP_5005 at 5703.648 kb on + strand, within PP_5005 at 5703.649 kb on - strand, within PP_5005 at 5703.649 kb on - strand, within PP_5005 at 5703.779 kb on + strand at 5703.779 kb on + strand at 5703.779 kb on + strand at 5703.801 kb on + strand at 5703.801 kb on + strand at 5703.801 kb on + strand at 5703.831 kb on + strand at 5703.831 kb on + strand at 5703.831 kb on + strand at 5703.831 kb on + strand at 5703.831 kb on + strand at 5703.831 kb on + strand at 5703.831 kb on + strand at 5703.831 kb on + strand at 5703.832 kb on - strand at 5703.832 kb on - strand at 5703.832 kb on - strand at 5703.928 kb on + strand, within PP_5006 at 5703.929 kb on - strand, within PP_5006 at 5703.978 kb on + strand, within PP_5006 at 5703.979 kb on - strand, within PP_5006 at 5703.981 kb on + strand, within PP_5006 at 5703.981 kb on + strand, within PP_5006 at 5703.982 kb on - strand, within PP_5006 at 5703.982 kb on - strand, within PP_5006 at 5704.135 kb on - strand, within PP_5006 at 5704.271 kb on - strand, within PP_5006 at 5704.280 kb on + strand, within PP_5006 at 5704.281 kb on - strand, within PP_5006 at 5704.386 kb on + strand, within PP_5006 at 5704.386 kb on + strand, within PP_5006 at 5704.386 kb on + strand, within PP_5006 at 5704.490 kb on + strand at 5704.490 kb on + strand at 5704.490 kb on + strand at 5704.490 kb on + strand at 5704.490 kb on + strand at 5704.491 kb on - strand at 5704.491 kb on - strand at 5704.491 kb on - strand at 5704.529 kb on + strand at 5704.529 kb on + strand at 5704.550 kb on + strand at 5704.551 kb on - strand at 5704.884 kb on - strand, within PP_5007 at 5705.275 kb on + strand, within PP_5007 at 5705.279 kb on - strand, within PP_5007 at 5705.280 kb on - strand, within PP_5007 at 5705.280 kb on - strand, within PP_5007 at 5705.384 kb on + strand at 5705.470 kb on - strand, within PP_5008
Per-strain Table
Position Strand Gene LocusTag Fraction Decanoic (C) remove 5,702,889 + PP_5005 0.43 +1.2 5,702,889 + PP_5005 0.43 -0.1 5,702,889 + PP_5005 0.43 +1.5 5,702,889 + PP_5005 0.43 +1.5 5,702,890 - PP_5005 0.43 +1.3 5,702,890 - PP_5005 0.43 +1.4 5,702,890 - PP_5005 0.43 +2.4 5,702,890 - PP_5005 0.43 +1.8 5,702,890 - PP_5005 0.43 +1.0 5,702,890 - PP_5005 0.43 +0.8 5,702,973 + PP_5005 0.48 +0.7 5,702,973 + PP_5005 0.48 -0.4 5,702,973 + PP_5005 0.48 +0.9 5,702,974 - PP_5005 0.48 +1.8 5,703,015 - PP_5005 0.50 +1.3 5,703,132 + PP_5005 0.57 +1.7 5,703,132 + PP_5005 0.57 +1.4 5,703,300 + PP_5005 0.67 +0.4 5,703,435 + PP_5005 0.75 +1.1 5,703,436 - PP_5005 0.75 +0.8 5,703,546 + PP_5005 0.82 +0.9 5,703,645 + PP_5005 0.88 +0.5 5,703,645 + PP_5005 0.88 +0.6 5,703,648 + PP_5005 0.88 +1.1 5,703,648 + PP_5005 0.88 +0.5 5,703,648 + PP_5005 0.88 +1.9 5,703,648 + PP_5005 0.88 +0.9 5,703,649 - PP_5005 0.88 +1.5 5,703,649 - PP_5005 0.88 +1.2 5,703,779 + +1.7 5,703,779 + +0.8 5,703,779 + +1.5 5,703,801 + +1.2 5,703,801 + +0.4 5,703,801 + +1.4 5,703,831 + +0.4 5,703,831 + +0.9 5,703,831 + +1.0 5,703,831 + +1.1 5,703,831 + +1.3 5,703,831 + +1.9 5,703,831 + +1.0 5,703,831 + +1.1 5,703,832 - +1.6 5,703,832 - +1.0 5,703,832 - +1.7 5,703,928 + PP_5006 0.11 +0.7 5,703,929 - PP_5006 0.11 +1.6 5,703,978 + PP_5006 0.19 +2.1 5,703,979 - PP_5006 0.19 +1.4 5,703,981 + PP_5006 0.20 +1.2 5,703,981 + PP_5006 0.20 +0.7 5,703,982 - PP_5006 0.20 +1.2 5,703,982 - PP_5006 0.20 +1.0 5,704,135 - PP_5006 0.45 +1.2 5,704,271 - PP_5006 0.67 +0.9 5,704,280 + PP_5006 0.68 +0.9 5,704,281 - PP_5006 0.68 +1.5 5,704,386 + PP_5006 0.85 +1.3 5,704,386 + PP_5006 0.85 +0.6 5,704,386 + PP_5006 0.85 +2.0 5,704,490 + +0.1 5,704,490 + -0.9 5,704,490 + +0.0 5,704,490 + -0.4 5,704,490 + +0.5 5,704,491 - +0.0 5,704,491 - -0.6 5,704,491 - -0.3 5,704,529 + +0.8 5,704,529 + +0.8 5,704,550 + +0.7 5,704,551 - -0.4 5,704,884 - PP_5007 0.38 +0.4 5,705,275 + PP_5007 0.88 +0.2 5,705,279 - PP_5007 0.88 -2.1 5,705,280 - PP_5007 0.88 -0.6 5,705,280 - PP_5007 0.88 -2.0 5,705,384 + -2.5 5,705,470 - PP_5008 0.21 -0.5
Or see this region's nucleotide sequence