Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1958 and PP_5495 are separated by 239 nucleotides PP_5495 and PP_1959 are separated by 69 nucleotides PP_1959 and PP_1960 are separated by 221 nucleotides
PP_1958: PP_1958 - conserved protein of unknown function, at 2,217,347 to 2,218,174
_1958
PP_5495: PP_5495 - protein of unknown function, at 2,218,414 to 2,218,851
_5495
PP_1959: PP_1959 - conserved protein of unknown function, at 2,218,921 to 2,220,081
_1959
PP_1960: PP_1960 - conserved protein of unknown function, at 2,220,303 to 2,221,625
_1960
Position (kb)
2218
2219
2220
2221 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2217.951 kb on + strand, within PP_1958 at 2217.986 kb on - strand, within PP_1958 at 2217.986 kb on - strand, within PP_1958 at 2217.991 kb on + strand, within PP_1958 at 2217.991 kb on + strand, within PP_1958 at 2217.991 kb on + strand, within PP_1958 at 2217.991 kb on + strand, within PP_1958 at 2217.992 kb on - strand, within PP_1958 at 2217.992 kb on - strand, within PP_1958 at 2217.992 kb on - strand, within PP_1958 at 2218.038 kb on + strand, within PP_1958 at 2218.038 kb on + strand, within PP_1958 at 2218.038 kb on + strand, within PP_1958 at 2218.039 kb on - strand, within PP_1958 at 2218.070 kb on + strand, within PP_1958 at 2218.100 kb on + strand at 2218.100 kb on + strand at 2218.100 kb on + strand at 2218.100 kb on + strand at 2218.100 kb on + strand at 2218.101 kb on - strand at 2218.101 kb on - strand at 2218.114 kb on + strand at 2218.114 kb on + strand at 2218.115 kb on - strand at 2218.132 kb on - strand at 2218.132 kb on - strand at 2218.216 kb on - strand at 2218.216 kb on - strand at 2218.277 kb on + strand at 2218.287 kb on + strand at 2218.307 kb on + strand at 2218.308 kb on - strand at 2218.314 kb on + strand at 2218.314 kb on + strand at 2218.379 kb on - strand at 2218.396 kb on - strand at 2218.396 kb on - strand at 2218.408 kb on + strand at 2218.424 kb on - strand at 2218.546 kb on - strand, within PP_5495 at 2218.597 kb on + strand, within PP_5495 at 2218.618 kb on + strand, within PP_5495 at 2218.824 kb on + strand at 2218.901 kb on + strand at 2219.138 kb on - strand, within PP_1959 at 2219.232 kb on + strand, within PP_1959 at 2219.372 kb on + strand, within PP_1959 at 2219.415 kb on + strand, within PP_1959 at 2219.416 kb on - strand, within PP_1959 at 2219.496 kb on + strand, within PP_1959 at 2219.509 kb on + strand, within PP_1959 at 2219.648 kb on - strand, within PP_1959 at 2219.729 kb on - strand, within PP_1959 at 2219.927 kb on - strand, within PP_1959 at 2219.927 kb on - strand, within PP_1959 at 2219.927 kb on - strand, within PP_1959 at 2219.962 kb on - strand, within PP_1959 at 2219.998 kb on + strand at 2220.147 kb on + strand at 2220.159 kb on + strand at 2220.160 kb on - strand at 2220.177 kb on + strand at 2220.178 kb on - strand at 2220.178 kb on - strand at 2220.264 kb on + strand at 2220.265 kb on - strand at 2220.337 kb on - strand at 2220.386 kb on + strand at 2220.387 kb on - strand at 2220.419 kb on + strand at 2220.420 kb on - strand at 2220.426 kb on + strand at 2220.426 kb on + strand at 2220.450 kb on + strand, within PP_1960 at 2220.450 kb on + strand, within PP_1960 at 2220.450 kb on + strand, within PP_1960 at 2220.451 kb on - strand, within PP_1960 at 2220.451 kb on - strand, within PP_1960 at 2220.451 kb on - strand, within PP_1960 at 2220.451 kb on - strand, within PP_1960 at 2220.455 kb on - strand, within PP_1960 at 2220.566 kb on - strand, within PP_1960 at 2220.569 kb on + strand, within PP_1960 at 2220.798 kb on - strand, within PP_1960 at 2220.798 kb on - strand, within PP_1960 at 2220.811 kb on - strand, within PP_1960 at 2220.854 kb on + strand, within PP_1960 at 2220.858 kb on - strand, within PP_1960 at 2220.871 kb on + strand, within PP_1960 at 2220.926 kb on + strand, within PP_1960 at 2220.958 kb on + strand, within PP_1960 at 2221.069 kb on - strand, within PP_1960
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 2,217,951 + PP_1958 0.73 -1.0 2,217,986 - PP_1958 0.77 +0.0 2,217,986 - PP_1958 0.77 +0.4 2,217,991 + PP_1958 0.78 -2.3 2,217,991 + PP_1958 0.78 -0.4 2,217,991 + PP_1958 0.78 -0.4 2,217,991 + PP_1958 0.78 -1.8 2,217,992 - PP_1958 0.78 +0.3 2,217,992 - PP_1958 0.78 +0.4 2,217,992 - PP_1958 0.78 -1.5 2,218,038 + PP_1958 0.83 +1.0 2,218,038 + PP_1958 0.83 +0.3 2,218,038 + PP_1958 0.83 +0.0 2,218,039 - PP_1958 0.84 -3.0 2,218,070 + PP_1958 0.87 +0.2 2,218,100 + -0.5 2,218,100 + -1.6 2,218,100 + +0.3 2,218,100 + +0.1 2,218,100 + +0.4 2,218,101 - -1.1 2,218,101 - -0.4 2,218,114 + -2.1 2,218,114 + -0.4 2,218,115 - -0.2 2,218,132 - +0.4 2,218,132 - -0.5 2,218,216 - -0.4 2,218,216 - -0.1 2,218,277 + -0.9 2,218,287 + -0.3 2,218,307 + +0.7 2,218,308 - -1.4 2,218,314 + +0.7 2,218,314 + +0.4 2,218,379 - -2.3 2,218,396 - -0.4 2,218,396 - -1.2 2,218,408 + +0.2 2,218,424 - +0.1 2,218,546 - PP_5495 0.30 -0.3 2,218,597 + PP_5495 0.42 +1.4 2,218,618 + PP_5495 0.47 -0.5 2,218,824 + +0.8 2,218,901 + -0.6 2,219,138 - PP_1959 0.19 -1.6 2,219,232 + PP_1959 0.27 -0.2 2,219,372 + PP_1959 0.39 -1.4 2,219,415 + PP_1959 0.43 -0.6 2,219,416 - PP_1959 0.43 -1.8 2,219,496 + PP_1959 0.50 -0.7 2,219,509 + PP_1959 0.51 -1.5 2,219,648 - PP_1959 0.63 -0.8 2,219,729 - PP_1959 0.70 -1.0 2,219,927 - PP_1959 0.87 +0.4 2,219,927 - PP_1959 0.87 -0.8 2,219,927 - PP_1959 0.87 +0.9 2,219,962 - PP_1959 0.90 -1.6 2,219,998 + -0.3 2,220,147 + -0.9 2,220,159 + +0.9 2,220,160 - -1.7 2,220,177 + +0.2 2,220,178 - -0.2 2,220,178 - +0.7 2,220,264 + -1.1 2,220,265 - +0.1 2,220,337 - +0.5 2,220,386 + +0.8 2,220,387 - +0.4 2,220,419 + -0.2 2,220,420 - -0.2 2,220,426 + +1.8 2,220,426 + +0.0 2,220,450 + PP_1960 0.11 +0.1 2,220,450 + PP_1960 0.11 -0.1 2,220,450 + PP_1960 0.11 -0.0 2,220,451 - PP_1960 0.11 +0.3 2,220,451 - PP_1960 0.11 -1.0 2,220,451 - PP_1960 0.11 +0.1 2,220,451 - PP_1960 0.11 +0.6 2,220,455 - PP_1960 0.11 +0.1 2,220,566 - PP_1960 0.20 +0.4 2,220,569 + PP_1960 0.20 -2.0 2,220,798 - PP_1960 0.37 +0.8 2,220,798 - PP_1960 0.37 +0.1 2,220,811 - PP_1960 0.38 +0.0 2,220,854 + PP_1960 0.42 +1.5 2,220,858 - PP_1960 0.42 -1.6 2,220,871 + PP_1960 0.43 -1.0 2,220,926 + PP_1960 0.47 +0.5 2,220,958 + PP_1960 0.50 -0.1 2,221,069 - PP_1960 0.58 -0.2
Or see this region's nucleotide sequence