Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5442 and PP_0306 are separated by 73 nucleotides PP_0306 and PP_0307 are separated by 102 nucleotides PP_0307 and PP_0308 are separated by 270 nucleotides
PP_5442: PP_5442 - protein of unknown function, at 366,697 to 367,314
_5442
PP_0306: PP_0306 - conserved protein of unknown function, at 367,388 to 368,116
_0306
PP_0307: PP_0307 - conserved exported protein of unknown function, at 368,219 to 368,650
_0307
PP_0308: PP_0308 - putative dipeptidase, at 368,921 to 369,898
_0308
Position (kb) 368
369 Strain fitness (log2 ratio) -2
-1
0
1
2 at 367.236 kb on + strand, within PP_5442 at 367.236 kb on + strand, within PP_5442 at 367.236 kb on + strand, within PP_5442 at 367.237 kb on - strand, within PP_5442 at 367.305 kb on + strand at 367.306 kb on - strand at 367.393 kb on + strand at 367.560 kb on + strand, within PP_0306 at 367.884 kb on + strand, within PP_0306 at 367.885 kb on - strand, within PP_0306 at 368.025 kb on - strand, within PP_0306 at 368.096 kb on + strand at 368.096 kb on + strand at 368.097 kb on - strand at 368.146 kb on - strand at 368.157 kb on - strand at 368.325 kb on + strand, within PP_0307 at 368.326 kb on - strand, within PP_0307 at 368.412 kb on - strand, within PP_0307 at 368.412 kb on - strand, within PP_0307 at 368.698 kb on + strand at 368.698 kb on + strand at 368.698 kb on + strand at 368.699 kb on - strand at 368.699 kb on - strand at 368.855 kb on + strand at 368.855 kb on + strand at 368.855 kb on + strand at 368.855 kb on + strand at 368.855 kb on + strand at 368.855 kb on + strand at 368.855 kb on + strand at 368.856 kb on - strand at 368.856 kb on - strand at 368.902 kb on + strand at 368.902 kb on + strand at 368.903 kb on - strand at 368.904 kb on + strand at 368.905 kb on - strand at 368.937 kb on + strand at 368.938 kb on - strand at 368.938 kb on - strand at 369.230 kb on + strand, within PP_0308 at 369.230 kb on + strand, within PP_0308 at 369.230 kb on + strand, within PP_0308 at 369.231 kb on - strand, within PP_0308 at 369.231 kb on - strand, within PP_0308 at 369.231 kb on - strand, within PP_0308 at 369.231 kb on - strand, within PP_0308 at 369.231 kb on - strand, within PP_0308 at 369.231 kb on - strand, within PP_0308 at 369.278 kb on + strand, within PP_0308 at 369.278 kb on + strand, within PP_0308 at 369.278 kb on + strand, within PP_0308 at 369.279 kb on - strand, within PP_0308 at 369.311 kb on + strand, within PP_0308 at 369.312 kb on - strand, within PP_0308 at 369.312 kb on - strand, within PP_0308 at 369.453 kb on - strand, within PP_0308 at 369.602 kb on + strand, within PP_0308 at 369.603 kb on - strand, within PP_0308 at 369.620 kb on + strand, within PP_0308 at 369.620 kb on + strand, within PP_0308 at 369.620 kb on + strand, within PP_0308 at 369.621 kb on - strand, within PP_0308 at 369.621 kb on - strand, within PP_0308
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 367,236 + PP_5442 0.87 -2.4 367,236 + PP_5442 0.87 +0.4 367,236 + PP_5442 0.87 -1.2 367,237 - PP_5442 0.87 -0.1 367,305 + +1.2 367,306 - +0.6 367,393 + +1.2 367,560 + PP_0306 0.24 -0.8 367,884 + PP_0306 0.68 -0.6 367,885 - PP_0306 0.68 -0.1 368,025 - PP_0306 0.87 -2.6 368,096 + -0.4 368,096 + +0.7 368,097 - +2.7 368,146 - +0.6 368,157 - +1.7 368,325 + PP_0307 0.25 +0.4 368,326 - PP_0307 0.25 +1.1 368,412 - PP_0307 0.45 +1.7 368,412 - PP_0307 0.45 -0.2 368,698 + +2.0 368,698 + -0.6 368,698 + +0.4 368,699 - -0.4 368,699 - -0.1 368,855 + +0.7 368,855 + -0.9 368,855 + +0.0 368,855 + +2.1 368,855 + +0.4 368,855 + +1.2 368,855 + +0.5 368,856 - +0.7 368,856 - -0.0 368,902 + -0.6 368,902 + +1.4 368,903 - -0.4 368,904 + +0.7 368,905 - -2.2 368,937 + +1.1 368,938 - -0.1 368,938 - -0.9 369,230 + PP_0308 0.32 -0.2 369,230 + PP_0308 0.32 -2.7 369,230 + PP_0308 0.32 +0.7 369,231 - PP_0308 0.32 -0.4 369,231 - PP_0308 0.32 -0.3 369,231 - PP_0308 0.32 -0.1 369,231 - PP_0308 0.32 -0.6 369,231 - PP_0308 0.32 +0.8 369,231 - PP_0308 0.32 +1.0 369,278 + PP_0308 0.37 -1.9 369,278 + PP_0308 0.37 -0.2 369,278 + PP_0308 0.37 -1.0 369,279 - PP_0308 0.37 +0.4 369,311 + PP_0308 0.40 +0.4 369,312 - PP_0308 0.40 +0.6 369,312 - PP_0308 0.40 +0.1 369,453 - PP_0308 0.54 +1.0 369,602 + PP_0308 0.70 -0.5 369,603 - PP_0308 0.70 -2.2 369,620 + PP_0308 0.71 -0.6 369,620 + PP_0308 0.71 +0.4 369,620 + PP_0308 0.71 -0.7 369,621 - PP_0308 0.72 -0.4 369,621 - PP_0308 0.72 -0.9
Or see this region's nucleotide sequence