Strain Fitness in Pseudomonas putida KT2440 around PP_2998

Experiment: 3-Methyl-2-Oxobutanoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2997 and PP_2998 are separated by 93 nucleotidesPP_2998 and PP_2999 overlap by 4 nucleotidesPP_2999 and PP_3000 overlap by 4 nucleotidesPP_3000 and PP_3001 overlap by 4 nucleotides PP_2997: PP_2997 - CnmA, at 3,393,507 to 3,394,406 _2997 PP_2998: PP_2998 - 2-dehydropantoate 2-reductase, at 3,394,500 to 3,395,447 _2998 PP_2999: PP_2999 - Glyoxalase family protein, at 3,395,444 to 3,395,842 _2999 PP_3000: PP_3000 - MaoC domain protein, at 3,395,839 to 3,396,294 _3000 PP_3001: PP_3001 - CAIB/BAIF family protein, at 3,396,291 to 3,397,523 _3001 Position (kb) 3394 3395 3396Strain fitness (log2 ratio) -1 0 1 2at 3393.565 kb on + strandat 3393.631 kb on - strand, within PP_2997at 3393.685 kb on - strand, within PP_2997at 3393.702 kb on + strand, within PP_2997at 3393.919 kb on + strand, within PP_2997at 3393.919 kb on + strand, within PP_2997at 3393.919 kb on + strand, within PP_2997at 3393.919 kb on + strand, within PP_2997at 3393.919 kb on + strand, within PP_2997at 3393.920 kb on - strand, within PP_2997at 3393.920 kb on - strand, within PP_2997at 3393.920 kb on - strand, within PP_2997at 3393.920 kb on - strand, within PP_2997at 3393.920 kb on - strand, within PP_2997at 3394.215 kb on - strand, within PP_2997at 3394.348 kb on + strandat 3394.348 kb on + strandat 3394.348 kb on + strandat 3394.348 kb on + strandat 3394.348 kb on + strandat 3394.349 kb on - strandat 3394.443 kb on - strandat 3394.467 kb on + strandat 3394.468 kb on - strandat 3394.663 kb on + strand, within PP_2998at 3394.664 kb on - strand, within PP_2998at 3394.690 kb on + strand, within PP_2998at 3394.774 kb on + strand, within PP_2998at 3394.875 kb on + strand, within PP_2998at 3394.875 kb on + strand, within PP_2998at 3394.875 kb on + strand, within PP_2998at 3394.876 kb on - strand, within PP_2998at 3394.876 kb on - strand, within PP_2998at 3394.876 kb on - strand, within PP_2998at 3394.876 kb on - strand, within PP_2998at 3395.122 kb on - strand, within PP_2998at 3395.402 kb on + strandat 3395.463 kb on - strandat 3395.580 kb on - strand, within PP_2999at 3395.902 kb on + strand, within PP_3000at 3395.902 kb on + strand, within PP_3000at 3395.903 kb on - strand, within PP_3000at 3395.903 kb on - strand, within PP_3000at 3395.933 kb on - strand, within PP_3000at 3395.981 kb on - strand, within PP_3000at 3395.981 kb on - strand, within PP_3000at 3396.287 kb on + strandat 3396.288 kb on - strandat 3396.334 kb on - strandat 3396.357 kb on + strandat 3396.357 kb on + strandat 3396.357 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Methyl-2-Oxobutanoic Acid (C)
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3,393,565 + +0.9
3,393,631 - PP_2997 0.14 +0.5
3,393,685 - PP_2997 0.20 +0.0
3,393,702 + PP_2997 0.22 -0.1
3,393,919 + PP_2997 0.46 +0.1
3,393,919 + PP_2997 0.46 +0.1
3,393,919 + PP_2997 0.46 -0.2
3,393,919 + PP_2997 0.46 +0.4
3,393,919 + PP_2997 0.46 +0.3
3,393,920 - PP_2997 0.46 +0.7
3,393,920 - PP_2997 0.46 +0.2
3,393,920 - PP_2997 0.46 -0.6
3,393,920 - PP_2997 0.46 +0.8
3,393,920 - PP_2997 0.46 +0.6
3,394,215 - PP_2997 0.79 -0.1
3,394,348 + -0.0
3,394,348 + -0.9
3,394,348 + +0.2
3,394,348 + -0.1
3,394,348 + +0.1
3,394,349 - +0.1
3,394,443 - +0.8
3,394,467 + +0.6
3,394,468 - -0.3
3,394,663 + PP_2998 0.17 +1.0
3,394,664 - PP_2998 0.17 -0.2
3,394,690 + PP_2998 0.20 +0.6
3,394,774 + PP_2998 0.29 +0.1
3,394,875 + PP_2998 0.40 +0.0
3,394,875 + PP_2998 0.40 +0.8
3,394,875 + PP_2998 0.40 +0.2
3,394,876 - PP_2998 0.40 -1.4
3,394,876 - PP_2998 0.40 -0.1
3,394,876 - PP_2998 0.40 +0.3
3,394,876 - PP_2998 0.40 +2.2
3,395,122 - PP_2998 0.66 +1.0
3,395,402 + +0.8
3,395,463 - -0.1
3,395,580 - PP_2999 0.34 +0.4
3,395,902 + PP_3000 0.14 -0.9
3,395,902 + PP_3000 0.14 +0.5
3,395,903 - PP_3000 0.14 -1.4
3,395,903 - PP_3000 0.14 -0.3
3,395,933 - PP_3000 0.21 +0.1
3,395,981 - PP_3000 0.31 -0.1
3,395,981 - PP_3000 0.31 +0.1
3,396,287 + +0.1
3,396,288 - +0.1
3,396,334 - -0.1
3,396,357 + -0.6
3,396,357 + -0.7
3,396,357 + +0.2

Or see this region's nucleotide sequence