Strain Fitness in Pseudomonas putida KT2440 around PP_0106

Experiment: Butyl stearate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0104 and PP_0105 are separated by 9 nucleotidesPP_0105 and PP_0106 are separated by 16 nucleotidesPP_0106 and PP_5427 are separated by 31 nucleotidesPP_5427 and PP_0107 are separated by 51 nucleotides PP_0104: PP_0104 - Cytochrome c oxidase subunit 1, at 109,981 to 111,570 _0104 PP_0105: PP_0105 - Cytochrome C oxidase assembly protein, at 111,580 to 112,146 _0105 PP_0106: PP_0106 - cytochrome c oxidase subunit 3, at 112,163 to 113,050 _0106 PP_5427: PP_5427 - conserved exported protein of unknown function, at 113,082 to 113,285 _5427 PP_0107: PP_0107 - conserved protein of unknown function, at 113,337 to 114,074 _0107 PP_0108: PP_0108 - conserved protein of unknown function, at 114,043 to 114,624 _0108 Position (kb) 112 113 114Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 111.163 kb on + strand, within PP_0104at 111.163 kb on + strand, within PP_0104at 111.163 kb on + strand, within PP_0104at 111.163 kb on + strand, within PP_0104at 111.163 kb on + strand, within PP_0104at 111.164 kb on - strand, within PP_0104at 111.164 kb on - strand, within PP_0104at 111.167 kb on + strand, within PP_0104at 111.167 kb on + strand, within PP_0104at 111.167 kb on + strand, within PP_0104at 111.167 kb on + strand, within PP_0104at 111.167 kb on + strand, within PP_0104at 111.168 kb on - strand, within PP_0104at 111.168 kb on - strand, within PP_0104at 111.168 kb on - strand, within PP_0104at 111.208 kb on + strand, within PP_0104at 111.241 kb on + strand, within PP_0104at 111.242 kb on - strand, within PP_0104at 111.242 kb on - strand, within PP_0104at 111.242 kb on - strand, within PP_0104at 111.320 kb on + strand, within PP_0104at 111.320 kb on + strand, within PP_0104at 111.355 kb on + strand, within PP_0104at 111.535 kb on + strandat 111.569 kb on - strandat 111.569 kb on - strandat 111.670 kb on + strand, within PP_0105at 111.671 kb on - strand, within PP_0105at 111.696 kb on + strand, within PP_0105at 111.721 kb on + strand, within PP_0105at 111.721 kb on + strand, within PP_0105at 111.808 kb on + strand, within PP_0105at 111.808 kb on + strand, within PP_0105at 111.809 kb on - strand, within PP_0105at 111.809 kb on - strand, within PP_0105at 111.909 kb on - strand, within PP_0105at 111.919 kb on - strand, within PP_0105at 111.970 kb on - strand, within PP_0105at 112.069 kb on + strand, within PP_0105at 112.181 kb on + strandat 112.181 kb on + strandat 112.181 kb on + strandat 112.181 kb on + strandat 112.182 kb on - strandat 112.182 kb on - strandat 112.182 kb on - strandat 112.182 kb on - strandat 112.182 kb on - strandat 112.184 kb on + strandat 112.184 kb on + strandat 112.185 kb on - strandat 112.185 kb on - strandat 112.185 kb on - strandat 112.185 kb on - strandat 112.185 kb on - strandat 112.185 kb on - strandat 112.337 kb on + strand, within PP_0106at 112.337 kb on + strand, within PP_0106at 112.337 kb on + strand, within PP_0106at 112.338 kb on - strand, within PP_0106at 112.392 kb on - strand, within PP_0106at 112.487 kb on + strand, within PP_0106at 112.488 kb on - strand, within PP_0106at 112.488 kb on - strand, within PP_0106at 112.488 kb on - strand, within PP_0106at 112.488 kb on - strand, within PP_0106at 112.497 kb on + strand, within PP_0106at 112.778 kb on - strand, within PP_0106at 112.799 kb on + strand, within PP_0106at 112.799 kb on + strand, within PP_0106at 112.800 kb on - strand, within PP_0106at 112.802 kb on + strand, within PP_0106at 112.802 kb on + strand, within PP_0106at 112.802 kb on + strand, within PP_0106at 112.803 kb on - strand, within PP_0106at 112.811 kb on + strand, within PP_0106at 112.812 kb on - strand, within PP_0106at 112.814 kb on - strand, within PP_0106at 112.847 kb on + strand, within PP_0106at 112.848 kb on - strand, within PP_0106at 112.882 kb on - strand, within PP_0106at 112.991 kb on + strandat 113.039 kb on + strandat 113.039 kb on + strandat 113.039 kb on + strandat 113.040 kb on - strandat 113.052 kb on + strandat 113.065 kb on - strandat 113.065 kb on - strandat 113.139 kb on + strand, within PP_5427at 113.139 kb on + strand, within PP_5427at 113.139 kb on + strand, within PP_5427at 113.139 kb on + strand, within PP_5427at 113.139 kb on + strand, within PP_5427at 113.140 kb on - strand, within PP_5427at 113.140 kb on - strand, within PP_5427at 113.140 kb on - strand, within PP_5427at 113.140 kb on - strand, within PP_5427at 113.318 kb on + strandat 113.318 kb on + strandat 113.318 kb on + strandat 113.319 kb on - strandat 113.319 kb on - strandat 113.323 kb on - strandat 113.323 kb on - strandat 113.323 kb on - strandat 113.323 kb on - strandat 113.325 kb on - strandat 113.402 kb on + strandat 113.402 kb on + strandat 113.402 kb on + strandat 113.403 kb on - strandat 113.403 kb on - strandat 113.460 kb on + strand, within PP_0107at 113.461 kb on - strand, within PP_0107at 113.461 kb on - strand, within PP_0107at 113.461 kb on - strand, within PP_0107at 113.461 kb on - strand, within PP_0107at 113.461 kb on - strand, within PP_0107at 113.461 kb on - strand, within PP_0107at 113.544 kb on + strand, within PP_0107at 113.544 kb on + strand, within PP_0107at 113.545 kb on - strand, within PP_0107at 113.545 kb on - strand, within PP_0107at 113.751 kb on + strand, within PP_0107at 113.751 kb on + strand, within PP_0107at 113.751 kb on + strand, within PP_0107at 113.752 kb on - strand, within PP_0107at 113.752 kb on - strand, within PP_0107at 113.842 kb on + strand, within PP_0107at 113.842 kb on + strand, within PP_0107at 113.958 kb on + strand, within PP_0107at 114.003 kb on + strandat 114.003 kb on + strandat 114.010 kb on - strandat 114.010 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Butyl stearate (C)
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111,163 + PP_0104 0.74 -0.4
111,163 + PP_0104 0.74 +0.2
111,163 + PP_0104 0.74 +1.1
111,163 + PP_0104 0.74 +0.0
111,163 + PP_0104 0.74 -0.4
111,164 - PP_0104 0.74 +0.3
111,164 - PP_0104 0.74 +1.1
111,167 + PP_0104 0.75 +0.3
111,167 + PP_0104 0.75 +0.6
111,167 + PP_0104 0.75 -0.3
111,167 + PP_0104 0.75 +0.7
111,167 + PP_0104 0.75 +0.4
111,168 - PP_0104 0.75 +0.3
111,168 - PP_0104 0.75 +0.2
111,168 - PP_0104 0.75 +0.2
111,208 + PP_0104 0.77 -0.0
111,241 + PP_0104 0.79 -2.4
111,242 - PP_0104 0.79 +0.3
111,242 - PP_0104 0.79 +0.2
111,242 - PP_0104 0.79 +0.9
111,320 + PP_0104 0.84 +0.8
111,320 + PP_0104 0.84 +0.5
111,355 + PP_0104 0.86 -0.3
111,535 + -0.2
111,569 - -1.3
111,569 - +1.3
111,670 + PP_0105 0.16 -0.7
111,671 - PP_0105 0.16 -0.1
111,696 + PP_0105 0.20 -0.6
111,721 + PP_0105 0.25 +0.8
111,721 + PP_0105 0.25 +0.4
111,808 + PP_0105 0.40 +1.1
111,808 + PP_0105 0.40 +0.4
111,809 - PP_0105 0.40 +0.7
111,809 - PP_0105 0.40 +0.7
111,909 - PP_0105 0.58 +0.8
111,919 - PP_0105 0.60 +0.3
111,970 - PP_0105 0.69 -0.8
112,069 + PP_0105 0.86 +0.2
112,181 + +1.9
112,181 + +0.4
112,181 + +0.8
112,181 + +1.0
112,182 - +0.0
112,182 - +0.6
112,182 - +0.5
112,182 - -1.3
112,182 - +1.7
112,184 + +0.8
112,184 + +0.9
112,185 - +0.8
112,185 - +0.4
112,185 - -1.2
112,185 - -0.3
112,185 - +0.1
112,185 - +0.4
112,337 + PP_0106 0.20 +0.4
112,337 + PP_0106 0.20 +1.0
112,337 + PP_0106 0.20 -0.4
112,338 - PP_0106 0.20 +0.3
112,392 - PP_0106 0.26 -0.2
112,487 + PP_0106 0.36 +0.2
112,488 - PP_0106 0.37 +1.0
112,488 - PP_0106 0.37 +0.5
112,488 - PP_0106 0.37 +0.5
112,488 - PP_0106 0.37 +0.1
112,497 + PP_0106 0.38 +0.6
112,778 - PP_0106 0.69 +0.4
112,799 + PP_0106 0.72 +0.3
112,799 + PP_0106 0.72 +0.9
112,800 - PP_0106 0.72 +1.6
112,802 + PP_0106 0.72 -0.5
112,802 + PP_0106 0.72 -0.3
112,802 + PP_0106 0.72 +0.5
112,803 - PP_0106 0.72 -0.1
112,811 + PP_0106 0.73 +0.1
112,812 - PP_0106 0.73 +0.7
112,814 - PP_0106 0.73 +0.4
112,847 + PP_0106 0.77 -0.3
112,848 - PP_0106 0.77 +0.6
112,882 - PP_0106 0.81 +1.6
112,991 + +0.8
113,039 + +1.0
113,039 + -0.6
113,039 + +1.0
113,040 - -0.1
113,052 + -0.1
113,065 - +0.9
113,065 - +0.7
113,139 + PP_5427 0.28 +1.0
113,139 + PP_5427 0.28 +0.2
113,139 + PP_5427 0.28 +0.7
113,139 + PP_5427 0.28 +0.1
113,139 + PP_5427 0.28 -0.5
113,140 - PP_5427 0.28 +0.4
113,140 - PP_5427 0.28 -0.7
113,140 - PP_5427 0.28 -0.2
113,140 - PP_5427 0.28 -0.4
113,318 + +0.4
113,318 + +0.7
113,318 + -2.8
113,319 - +0.0
113,319 - +0.0
113,323 - -0.4
113,323 - +1.9
113,323 - +0.9
113,323 - -0.5
113,325 - +0.3
113,402 + +1.0
113,402 + +1.5
113,402 + +1.4
113,403 - +0.0
113,403 - +0.2
113,460 + PP_0107 0.17 -0.7
113,461 - PP_0107 0.17 +1.2
113,461 - PP_0107 0.17 +0.5
113,461 - PP_0107 0.17 -2.6
113,461 - PP_0107 0.17 +0.9
113,461 - PP_0107 0.17 +0.3
113,461 - PP_0107 0.17 +0.4
113,544 + PP_0107 0.28 +0.3
113,544 + PP_0107 0.28 -0.8
113,545 - PP_0107 0.28 +1.3
113,545 - PP_0107 0.28 -0.1
113,751 + PP_0107 0.56 -0.1
113,751 + PP_0107 0.56 -0.2
113,751 + PP_0107 0.56 -0.1
113,752 - PP_0107 0.56 -0.2
113,752 - PP_0107 0.56 -0.2
113,842 + PP_0107 0.68 +0.5
113,842 + PP_0107 0.68 +0.1
113,958 + PP_0107 0.84 +0.8
114,003 + -1.3
114,003 + +0.2
114,010 - -0.4
114,010 - +0.1

Or see this region's nucleotide sequence