Experiment: Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3521 and Atu3522 are separated by 81 nucleotides Atu3522 and Atu3523 are separated by 56 nucleotides
Atu3521: Atu3521 - permease, at 570,113 to 571,006
Atu3521
Atu3522: Atu3522 - glucans biosynthesis protein, at 571,088 to 572,290
Atu3522
Atu3523: Atu3523 - polysaccharide biosynthesis-like protein, at 572,347 to 573,762
Atu3523
Position (kb) 571
572
573 Strain fitness (log2 ratio) -1
0
1
2 at 570.243 kb on + strand, within Atu3521 at 570.442 kb on + strand, within Atu3521 at 570.442 kb on + strand, within Atu3521 at 570.475 kb on - strand, within Atu3521 at 570.604 kb on - strand, within Atu3521 at 570.633 kb on - strand, within Atu3521 at 570.731 kb on - strand, within Atu3521 at 570.795 kb on + strand, within Atu3521 at 570.837 kb on + strand, within Atu3521 at 570.931 kb on + strand at 571.135 kb on - strand at 571.137 kb on - strand at 571.147 kb on - strand at 571.172 kb on + strand at 571.172 kb on + strand at 571.212 kb on - strand, within Atu3522 at 571.229 kb on + strand, within Atu3522 at 571.252 kb on + strand, within Atu3522 at 571.698 kb on - strand, within Atu3522 at 572.157 kb on - strand, within Atu3522 at 572.282 kb on - strand at 572.306 kb on + strand at 572.348 kb on + strand at 572.353 kb on + strand at 572.361 kb on - strand at 572.373 kb on + strand at 572.381 kb on + strand at 572.483 kb on + strand at 572.486 kb on + strand at 572.587 kb on + strand, within Atu3523 at 572.635 kb on + strand, within Atu3523 at 572.643 kb on - strand, within Atu3523 at 572.720 kb on - strand, within Atu3523 at 572.789 kb on + strand, within Atu3523 at 572.832 kb on + strand, within Atu3523 at 572.926 kb on + strand, within Atu3523 at 572.934 kb on - strand, within Atu3523 at 572.934 kb on - strand, within Atu3523 at 573.091 kb on + strand, within Atu3523 at 573.099 kb on - strand, within Atu3523 at 573.219 kb on - strand, within Atu3523
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 570,243 + Atu3521 0.15 -1.3 570,442 + Atu3521 0.37 -0.2 570,442 + Atu3521 0.37 -0.0 570,475 - Atu3521 0.40 +0.6 570,604 - Atu3521 0.55 -0.3 570,633 - Atu3521 0.58 +0.6 570,731 - Atu3521 0.69 +2.2 570,795 + Atu3521 0.76 -0.4 570,837 + Atu3521 0.81 -1.0 570,931 + -0.4 571,135 - +0.2 571,137 - +0.5 571,147 - -0.2 571,172 + -0.3 571,172 + +0.9 571,212 - Atu3522 0.10 +0.7 571,229 + Atu3522 0.12 +0.1 571,252 + Atu3522 0.14 +0.1 571,698 - Atu3522 0.51 -0.6 572,157 - Atu3522 0.89 +0.4 572,282 - +0.2 572,306 + +0.1 572,348 + -0.3 572,353 + -0.2 572,361 - -1.0 572,373 + +1.5 572,381 + -1.2 572,483 + -0.5 572,486 + -0.0 572,587 + Atu3523 0.17 -1.2 572,635 + Atu3523 0.20 -0.9 572,643 - Atu3523 0.21 +0.5 572,720 - Atu3523 0.26 -1.6 572,789 + Atu3523 0.31 -0.1 572,832 + Atu3523 0.34 -0.6 572,926 + Atu3523 0.41 -0.8 572,934 - Atu3523 0.41 -0.4 572,934 - Atu3523 0.41 -0.4 573,091 + Atu3523 0.53 -0.4 573,099 - Atu3523 0.53 +0.6 573,219 - Atu3523 0.62 -0.4
Or see this region's nucleotide sequence