Experiment: Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0601 and Atu0602 are separated by 12 nucleotides Atu0602 and Atu0603 are separated by 123 nucleotides
Atu0601: Atu0601 - oxidoreductase, at 587,461 to 588,747
Atu0601
Atu0602: Atu0602 - glutamine synthetase, at 588,760 to 590,199
Atu0602
Atu0603: Atu0603 - hypothetical protein, at 590,323 to 591,507
Atu0603
Position (kb) 588
589
590
591 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 587.819 kb on + strand, within Atu0601 at 587.853 kb on + strand, within Atu0601 at 587.914 kb on + strand, within Atu0601 at 587.943 kb on - strand, within Atu0601 at 588.353 kb on + strand, within Atu0601 at 588.353 kb on + strand, within Atu0601 at 588.353 kb on + strand, within Atu0601 at 588.361 kb on - strand, within Atu0601 at 588.361 kb on - strand, within Atu0601 at 588.361 kb on - strand, within Atu0601 at 588.413 kb on + strand, within Atu0601 at 588.560 kb on + strand, within Atu0601 at 588.597 kb on + strand, within Atu0601 at 588.605 kb on - strand, within Atu0601 at 588.605 kb on - strand, within Atu0601 at 588.605 kb on - strand, within Atu0601 at 588.606 kb on - strand, within Atu0601 at 588.709 kb on - strand at 588.797 kb on - strand at 588.815 kb on - strand at 588.850 kb on - strand at 588.893 kb on - strand at 588.911 kb on + strand, within Atu0602 at 588.911 kb on + strand, within Atu0602 at 588.911 kb on + strand, within Atu0602 at 588.911 kb on + strand, within Atu0602 at 588.919 kb on - strand, within Atu0602 at 588.919 kb on - strand, within Atu0602 at 588.919 kb on - strand, within Atu0602 at 588.919 kb on - strand, within Atu0602 at 588.919 kb on - strand, within Atu0602 at 588.919 kb on - strand, within Atu0602 at 588.919 kb on - strand, within Atu0602 at 588.919 kb on - strand, within Atu0602 at 588.986 kb on - strand, within Atu0602 at 589.089 kb on - strand, within Atu0602 at 589.091 kb on - strand, within Atu0602 at 589.134 kb on - strand, within Atu0602 at 589.202 kb on + strand, within Atu0602 at 589.408 kb on + strand, within Atu0602 at 589.556 kb on + strand, within Atu0602 at 589.725 kb on + strand, within Atu0602 at 590.058 kb on + strand at 590.058 kb on + strand at 590.058 kb on + strand at 590.115 kb on + strand at 590.135 kb on - strand at 590.420 kb on + strand at 590.430 kb on + strand at 590.555 kb on + strand, within Atu0603 at 590.636 kb on - strand, within Atu0603 at 590.878 kb on - strand, within Atu0603 at 591.004 kb on + strand, within Atu0603 at 591.062 kb on + strand, within Atu0603 at 591.062 kb on + strand, within Atu0603 at 591.070 kb on - strand, within Atu0603
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 587,819 + Atu0601 0.28 -0.4 587,853 + Atu0601 0.30 -4.6 587,914 + Atu0601 0.35 -4.4 587,943 - Atu0601 0.37 -1.9 588,353 + Atu0601 0.69 -1.9 588,353 + Atu0601 0.69 -2.1 588,353 + Atu0601 0.69 -4.1 588,361 - Atu0601 0.70 -3.0 588,361 - Atu0601 0.70 -0.0 588,361 - Atu0601 0.70 -1.6 588,413 + Atu0601 0.74 -1.0 588,560 + Atu0601 0.85 +0.4 588,597 + Atu0601 0.88 -2.8 588,605 - Atu0601 0.89 -2.4 588,605 - Atu0601 0.89 -4.1 588,605 - Atu0601 0.89 -4.0 588,606 - Atu0601 0.89 -1.6 588,709 - -1.3 588,797 - -3.6 588,815 - -3.4 588,850 - -3.8 588,893 - -4.7 588,911 + Atu0602 0.10 -3.8 588,911 + Atu0602 0.10 -3.0 588,911 + Atu0602 0.10 -2.0 588,911 + Atu0602 0.10 -4.0 588,919 - Atu0602 0.11 -4.9 588,919 - Atu0602 0.11 -5.3 588,919 - Atu0602 0.11 -3.0 588,919 - Atu0602 0.11 -1.6 588,919 - Atu0602 0.11 -4.4 588,919 - Atu0602 0.11 -2.4 588,919 - Atu0602 0.11 -5.8 588,919 - Atu0602 0.11 -1.8 588,986 - Atu0602 0.16 -1.0 589,089 - Atu0602 0.23 -3.1 589,091 - Atu0602 0.23 -1.4 589,134 - Atu0602 0.26 -1.8 589,202 + Atu0602 0.31 -0.0 589,408 + Atu0602 0.45 -6.1 589,556 + Atu0602 0.55 -3.8 589,725 + Atu0602 0.67 -1.9 590,058 + -1.0 590,058 + -5.4 590,058 + -1.8 590,115 + -2.0 590,135 - -6.4 590,420 + +0.3 590,430 + +0.5 590,555 + Atu0603 0.20 -0.3 590,636 - Atu0603 0.26 +0.1 590,878 - Atu0603 0.47 +0.5 591,004 + Atu0603 0.57 +0.2 591,062 + Atu0603 0.62 +0.4 591,062 + Atu0603 0.62 -0.3 591,070 - Atu0603 0.63 +0.5
Or see this region's nucleotide sequence