Experiment: Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8140 and Atu0953 are separated by 58 nucleotides Atu0953 and Atu0954 are separated by 256 nucleotides Atu0954 and Atu0955 are separated by 195 nucleotides Atu0955 and Atu0956 are separated by 49 nucleotides
Atu8140: Atu8140 - hypothetical protein, at 942,423 to 943,076
Atu8140
Atu0953: Atu0953 - hypothetical protein, at 943,135 to 943,443
Atu0953
Atu0954: Atu0954 - phage head portal protein, at 943,700 to 944,866
Atu0954
Atu0955: Atu0955 - hypothetical protein, at 945,062 to 945,382
Atu0955
Atu0956: Atu0956 - phage prohead protease, at 945,432 to 946,004
Atu0956
Position (kb) 943
944
945 Strain fitness (log2 ratio) -2
-1
0
1 at 942.806 kb on - strand, within Atu8140 at 942.811 kb on - strand, within Atu8140 at 942.836 kb on + strand, within Atu8140 at 942.877 kb on - strand, within Atu8140 at 942.909 kb on - strand, within Atu8140 at 942.984 kb on - strand, within Atu8140 at 942.986 kb on + strand, within Atu8140 at 943.052 kb on + strand at 943.081 kb on + strand at 943.114 kb on - strand at 943.114 kb on - strand at 943.251 kb on + strand, within Atu0953 at 943.367 kb on + strand, within Atu0953 at 943.486 kb on - strand at 943.523 kb on + strand at 943.531 kb on - strand at 943.531 kb on - strand at 943.624 kb on + strand at 943.780 kb on + strand at 943.801 kb on + strand at 943.838 kb on - strand, within Atu0954 at 944.034 kb on + strand, within Atu0954 at 944.109 kb on + strand, within Atu0954 at 944.112 kb on - strand, within Atu0954 at 944.119 kb on + strand, within Atu0954 at 944.127 kb on - strand, within Atu0954 at 944.169 kb on + strand, within Atu0954 at 944.171 kb on + strand, within Atu0954 at 944.238 kb on + strand, within Atu0954 at 944.273 kb on - strand, within Atu0954 at 944.341 kb on + strand, within Atu0954 at 944.364 kb on - strand, within Atu0954 at 944.406 kb on - strand, within Atu0954 at 944.437 kb on + strand, within Atu0954 at 944.441 kb on - strand, within Atu0954 at 944.514 kb on + strand, within Atu0954 at 944.602 kb on + strand, within Atu0954 at 944.699 kb on + strand, within Atu0954 at 944.712 kb on - strand, within Atu0954 at 944.738 kb on + strand, within Atu0954 at 944.753 kb on - strand at 944.867 kb on + strand at 944.878 kb on - strand at 944.979 kb on + strand at 944.989 kb on - strand at 945.037 kb on - strand at 945.061 kb on - strand at 945.114 kb on + strand, within Atu0955 at 945.234 kb on + strand, within Atu0955 at 945.260 kb on - strand, within Atu0955 at 945.321 kb on + strand, within Atu0955 at 945.329 kb on - strand, within Atu0955 at 945.341 kb on - strand, within Atu0955 at 945.358 kb on + strand at 945.378 kb on + strand at 945.442 kb on + strand at 945.478 kb on + strand at 945.478 kb on + strand at 945.486 kb on - strand at 945.557 kb on + strand, within Atu0956 at 945.682 kb on + strand, within Atu0956 at 945.748 kb on - strand, within Atu0956 at 945.749 kb on + strand, within Atu0956
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 942,806 - Atu8140 0.59 +0.2 942,811 - Atu8140 0.59 -0.5 942,836 + Atu8140 0.63 -0.1 942,877 - Atu8140 0.69 +0.5 942,909 - Atu8140 0.74 -0.2 942,984 - Atu8140 0.86 +0.7 942,986 + Atu8140 0.86 +0.9 943,052 + +0.4 943,081 + -1.1 943,114 - +0.4 943,114 - +0.3 943,251 + Atu0953 0.38 +0.2 943,367 + Atu0953 0.75 +0.8 943,486 - -1.5 943,523 + -0.1 943,531 - -0.6 943,531 - +0.0 943,624 + -0.3 943,780 + +1.0 943,801 + +0.9 943,838 - Atu0954 0.12 -0.3 944,034 + Atu0954 0.29 +0.5 944,109 + Atu0954 0.35 +1.0 944,112 - Atu0954 0.35 +0.8 944,119 + Atu0954 0.36 +0.1 944,127 - Atu0954 0.37 +0.2 944,169 + Atu0954 0.40 -0.2 944,171 + Atu0954 0.40 -1.3 944,238 + Atu0954 0.46 +1.2 944,273 - Atu0954 0.49 -0.1 944,341 + Atu0954 0.55 -0.1 944,364 - Atu0954 0.57 +0.5 944,406 - Atu0954 0.60 +0.7 944,437 + Atu0954 0.63 -0.5 944,441 - Atu0954 0.63 +0.1 944,514 + Atu0954 0.70 +1.6 944,602 + Atu0954 0.77 +0.0 944,699 + Atu0954 0.86 +0.8 944,712 - Atu0954 0.87 +0.7 944,738 + Atu0954 0.89 -0.8 944,753 - +0.1 944,867 + +0.3 944,878 - -0.2 944,979 + +0.3 944,989 - +0.0 945,037 - +0.1 945,061 - +0.5 945,114 + Atu0955 0.16 +1.5 945,234 + Atu0955 0.54 +1.2 945,260 - Atu0955 0.62 +0.9 945,321 + Atu0955 0.81 +0.2 945,329 - Atu0955 0.83 +0.4 945,341 - Atu0955 0.87 -0.3 945,358 + +0.1 945,378 + -0.9 945,442 + -0.2 945,478 + -1.7 945,478 + +0.9 945,486 - +0.9 945,557 + Atu0956 0.22 +0.7 945,682 + Atu0956 0.44 -2.1 945,748 - Atu0956 0.55 -0.5 945,749 + Atu0956 0.55 +0.2
Or see this region's nucleotide sequence