Strain Fitness in Agrobacterium fabrum C58 around Atu3869

Experiment: Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3868 and Atu3869 are separated by 147 nucleotidesAtu3869 and Atu3870 are separated by 60 nucleotides Atu3868: Atu3868 - hypothetical protein, at 960,696 to 961,934 Atu3868 Atu3869: Atu3869 - ABC transporter permease, at 962,082 to 963,704 Atu3869 Atu3870: Atu3870 - D-lactate dehydrogenase, at 963,765 to 964,778 Atu3870 Position (kb) 962 963 964Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 961.169 kb on + strand, within Atu3868at 961.215 kb on + strand, within Atu3868at 961.223 kb on - strand, within Atu3868at 961.223 kb on - strand, within Atu3868at 961.235 kb on + strand, within Atu3868at 961.248 kb on - strand, within Atu3868at 961.254 kb on - strand, within Atu3868at 961.258 kb on - strand, within Atu3868at 961.330 kb on - strand, within Atu3868at 961.354 kb on - strand, within Atu3868at 961.382 kb on + strand, within Atu3868at 961.382 kb on + strand, within Atu3868at 961.382 kb on + strand, within Atu3868at 961.390 kb on - strand, within Atu3868at 961.390 kb on - strand, within Atu3868at 961.390 kb on - strand, within Atu3868at 961.392 kb on + strand, within Atu3868at 961.397 kb on + strand, within Atu3868at 961.400 kb on - strand, within Atu3868at 961.551 kb on + strand, within Atu3868at 961.564 kb on + strand, within Atu3868at 961.572 kb on - strand, within Atu3868at 961.626 kb on + strand, within Atu3868at 961.662 kb on - strand, within Atu3868at 961.662 kb on - strand, within Atu3868at 961.696 kb on - strand, within Atu3868at 961.696 kb on - strand, within Atu3868at 961.706 kb on - strand, within Atu3868at 961.733 kb on - strand, within Atu3868at 961.779 kb on + strand, within Atu3868at 961.858 kb on + strandat 961.942 kb on + strandat 961.942 kb on + strandat 961.942 kb on + strandat 961.942 kb on + strandat 961.942 kb on + strandat 961.945 kb on - strandat 961.945 kb on - strandat 961.950 kb on - strandat 961.950 kb on - strandat 961.950 kb on - strandat 961.950 kb on - strandat 961.968 kb on + strandat 961.985 kb on + strandat 961.997 kb on + strandat 961.997 kb on - strandat 962.079 kb on + strandat 962.087 kb on - strandat 962.167 kb on + strandat 962.210 kb on + strandat 962.250 kb on - strand, within Atu3869at 962.267 kb on + strand, within Atu3869at 962.327 kb on + strand, within Atu3869at 962.342 kb on - strand, within Atu3869at 962.344 kb on + strand, within Atu3869at 962.352 kb on - strand, within Atu3869at 962.352 kb on - strand, within Atu3869at 962.357 kb on - strand, within Atu3869at 962.357 kb on - strand, within Atu3869at 962.357 kb on - strand, within Atu3869at 962.441 kb on + strand, within Atu3869at 962.454 kb on + strand, within Atu3869at 962.462 kb on - strand, within Atu3869at 962.498 kb on - strand, within Atu3869at 962.511 kb on + strand, within Atu3869at 962.714 kb on + strand, within Atu3869at 962.793 kb on - strand, within Atu3869at 962.878 kb on - strand, within Atu3869at 962.919 kb on - strand, within Atu3869at 962.935 kb on + strand, within Atu3869at 962.943 kb on + strand, within Atu3869at 962.951 kb on - strand, within Atu3869at 962.980 kb on + strand, within Atu3869at 962.999 kb on + strand, within Atu3869at 963.050 kb on - strand, within Atu3869at 963.077 kb on + strand, within Atu3869at 963.086 kb on - strand, within Atu3869at 963.186 kb on + strand, within Atu3869at 963.307 kb on + strand, within Atu3869at 963.307 kb on + strand, within Atu3869at 963.307 kb on + strand, within Atu3869at 963.315 kb on - strand, within Atu3869at 963.315 kb on - strand, within Atu3869at 963.474 kb on + strand, within Atu3869at 963.488 kb on + strand, within Atu3869at 963.524 kb on + strand, within Atu3869at 963.524 kb on + strand, within Atu3869at 963.563 kb on - strandat 963.596 kb on + strandat 963.671 kb on - strandat 963.693 kb on - strandat 963.708 kb on - strandat 963.708 kb on - strandat 963.792 kb on + strandat 963.800 kb on - strandat 963.986 kb on - strand, within Atu3870at 963.991 kb on - strand, within Atu3870at 964.028 kb on + strand, within Atu3870at 964.032 kb on + strand, within Atu3870at 964.032 kb on + strand, within Atu3870at 964.032 kb on + strand, within Atu3870at 964.060 kb on + strand, within Atu3870at 964.063 kb on - strand, within Atu3870at 964.084 kb on + strand, within Atu3870at 964.092 kb on + strand, within Atu3870at 964.128 kb on + strand, within Atu3870at 964.136 kb on - strand, within Atu3870at 964.226 kb on - strand, within Atu3870at 964.310 kb on + strand, within Atu3870at 964.313 kb on + strand, within Atu3870at 964.313 kb on + strand, within Atu3870at 964.316 kb on - strand, within Atu3870at 964.319 kb on + strand, within Atu3870at 964.321 kb on + strand, within Atu3870at 964.327 kb on - strand, within Atu3870at 964.327 kb on - strand, within Atu3870at 964.340 kb on + strand, within Atu3870at 964.341 kb on - strand, within Atu3870at 964.351 kb on - strand, within Atu3870at 964.365 kb on + strand, within Atu3870at 964.411 kb on + strand, within Atu3870at 964.490 kb on + strand, within Atu3870at 964.497 kb on + strand, within Atu3870at 964.505 kb on - strand, within Atu3870at 964.536 kb on - strand, within Atu3870at 964.553 kb on - strand, within Atu3870at 964.679 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
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961,169 + Atu3868 0.38 -0.9
961,215 + Atu3868 0.42 +0.2
961,223 - Atu3868 0.43 +0.1
961,223 - Atu3868 0.43 +0.6
961,235 + Atu3868 0.44 +0.3
961,248 - Atu3868 0.45 -1.2
961,254 - Atu3868 0.45 +1.3
961,258 - Atu3868 0.45 +0.9
961,330 - Atu3868 0.51 -0.8
961,354 - Atu3868 0.53 +0.4
961,382 + Atu3868 0.55 +0.0
961,382 + Atu3868 0.55 -0.1
961,382 + Atu3868 0.55 -0.4
961,390 - Atu3868 0.56 +0.4
961,390 - Atu3868 0.56 +2.4
961,390 - Atu3868 0.56 +1.5
961,392 + Atu3868 0.56 -0.6
961,397 + Atu3868 0.57 +0.3
961,400 - Atu3868 0.57 +0.6
961,551 + Atu3868 0.69 +0.4
961,564 + Atu3868 0.70 +0.9
961,572 - Atu3868 0.71 -1.5
961,626 + Atu3868 0.75 -2.0
961,662 - Atu3868 0.78 +0.6
961,662 - Atu3868 0.78 -0.9
961,696 - Atu3868 0.81 +0.3
961,696 - Atu3868 0.81 -0.5
961,706 - Atu3868 0.82 +0.4
961,733 - Atu3868 0.84 +0.3
961,779 + Atu3868 0.87 +0.5
961,858 + -0.0
961,942 + -3.3
961,942 + +0.3
961,942 + +0.7
961,942 + -0.5
961,942 + -1.1
961,945 - -0.8
961,945 - +0.2
961,950 - +0.1
961,950 - -1.4
961,950 - +0.1
961,950 - -0.0
961,968 + +1.9
961,985 + -0.5
961,997 + +0.2
961,997 - -0.7
962,079 + +0.2
962,087 - +0.0
962,167 + -0.5
962,210 + -1.4
962,250 - Atu3869 0.10 +0.5
962,267 + Atu3869 0.11 -0.7
962,327 + Atu3869 0.15 +0.3
962,342 - Atu3869 0.16 -0.1
962,344 + Atu3869 0.16 +0.3
962,352 - Atu3869 0.17 +0.6
962,352 - Atu3869 0.17 -1.3
962,357 - Atu3869 0.17 +0.6
962,357 - Atu3869 0.17 -0.1
962,357 - Atu3869 0.17 +0.2
962,441 + Atu3869 0.22 +0.2
962,454 + Atu3869 0.23 +1.3
962,462 - Atu3869 0.23 -0.4
962,498 - Atu3869 0.26 +1.0
962,511 + Atu3869 0.26 -0.8
962,714 + Atu3869 0.39 -0.9
962,793 - Atu3869 0.44 -0.2
962,878 - Atu3869 0.49 +1.3
962,919 - Atu3869 0.52 +0.0
962,935 + Atu3869 0.53 +0.1
962,943 + Atu3869 0.53 +0.4
962,951 - Atu3869 0.54 +0.7
962,980 + Atu3869 0.55 +0.7
962,999 + Atu3869 0.57 -0.1
963,050 - Atu3869 0.60 +0.8
963,077 + Atu3869 0.61 +1.0
963,086 - Atu3869 0.62 +3.0
963,186 + Atu3869 0.68 +0.4
963,307 + Atu3869 0.75 -0.0
963,307 + Atu3869 0.75 +0.7
963,307 + Atu3869 0.75 +0.7
963,315 - Atu3869 0.76 +0.8
963,315 - Atu3869 0.76 -0.4
963,474 + Atu3869 0.86 +0.4
963,488 + Atu3869 0.87 +1.3
963,524 + Atu3869 0.89 -0.0
963,524 + Atu3869 0.89 -0.4
963,563 - +0.9
963,596 + -0.5
963,671 - +0.2
963,693 - -0.4
963,708 - +0.1
963,708 - -0.0
963,792 + +0.7
963,800 - +0.5
963,986 - Atu3870 0.22 +0.0
963,991 - Atu3870 0.22 -0.5
964,028 + Atu3870 0.26 +0.6
964,032 + Atu3870 0.26 +0.5
964,032 + Atu3870 0.26 +0.6
964,032 + Atu3870 0.26 -0.7
964,060 + Atu3870 0.29 -2.9
964,063 - Atu3870 0.29 -3.5
964,084 + Atu3870 0.31 +0.3
964,092 + Atu3870 0.32 -0.1
964,128 + Atu3870 0.36 +0.3
964,136 - Atu3870 0.37 +0.6
964,226 - Atu3870 0.45 -0.3
964,310 + Atu3870 0.54 +0.7
964,313 + Atu3870 0.54 +1.5
964,313 + Atu3870 0.54 +0.6
964,316 - Atu3870 0.54 +1.1
964,319 + Atu3870 0.55 +1.2
964,321 + Atu3870 0.55 -0.3
964,327 - Atu3870 0.55 +0.7
964,327 - Atu3870 0.55 -0.5
964,340 + Atu3870 0.57 -1.1
964,341 - Atu3870 0.57 -0.1
964,351 - Atu3870 0.58 -1.6
964,365 + Atu3870 0.59 +1.3
964,411 + Atu3870 0.64 +1.6
964,490 + Atu3870 0.71 -1.8
964,497 + Atu3870 0.72 +3.5
964,505 - Atu3870 0.73 +0.4
964,536 - Atu3870 0.76 -0.8
964,553 - Atu3870 0.78 +0.6
964,679 - -1.1

Or see this region's nucleotide sequence