Experiment: Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3409 and Atu3410 are separated by 92 nucleotides Atu3410 and Atu3411 overlap by 1 nucleotides Atu3411 and Atu3412 overlap by 1 nucleotides
Atu3409: Atu3409 - oligopeptide ABC transporter substrate-binding protein, at 454,787 to 456,397
Atu3409
Atu3410: Atu3410 - ABC transporter permease, at 456,490 to 457,440
Atu3410
Atu3411: Atu3411 - ABC transporter permease, at 457,440 to 458,291
Atu3411
Atu3412: Atu3412 - ABC transporter permease, at 458,291 to 459,946
Atu3412
Position (kb) 456
457
458 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 455.508 kb on - strand, within Atu3409 at 455.513 kb on + strand, within Atu3409 at 455.523 kb on + strand, within Atu3409 at 455.531 kb on - strand, within Atu3409 at 455.616 kb on + strand, within Atu3409 at 455.616 kb on + strand, within Atu3409 at 455.624 kb on - strand, within Atu3409 at 455.965 kb on + strand, within Atu3409 at 456.048 kb on - strand, within Atu3409 at 456.056 kb on - strand, within Atu3409 at 456.073 kb on - strand, within Atu3409 at 456.121 kb on + strand, within Atu3409 at 456.155 kb on - strand, within Atu3409 at 456.273 kb on + strand at 456.277 kb on - strand at 456.312 kb on + strand at 456.360 kb on - strand at 456.366 kb on - strand at 456.374 kb on + strand at 456.649 kb on + strand, within Atu3410 at 456.693 kb on - strand, within Atu3410 at 456.717 kb on + strand, within Atu3410 at 456.725 kb on - strand, within Atu3410 at 456.725 kb on - strand, within Atu3410 at 456.729 kb on + strand, within Atu3410 at 456.827 kb on - strand, within Atu3410 at 456.888 kb on - strand, within Atu3410 at 456.955 kb on + strand, within Atu3410 at 456.955 kb on + strand, within Atu3410 at 456.961 kb on - strand, within Atu3410 at 457.068 kb on - strand, within Atu3410 at 457.188 kb on - strand, within Atu3410 at 457.204 kb on + strand, within Atu3410 at 457.205 kb on - strand, within Atu3410 at 457.226 kb on - strand, within Atu3410 at 457.344 kb on + strand, within Atu3410 at 457.353 kb on - strand at 457.353 kb on - strand at 457.407 kb on - strand at 457.407 kb on - strand at 457.524 kb on + strand at 457.557 kb on + strand, within Atu3411 at 457.727 kb on - strand, within Atu3411 at 457.911 kb on - strand, within Atu3411 at 457.942 kb on + strand, within Atu3411 at 458.022 kb on - strand, within Atu3411 at 458.041 kb on + strand, within Atu3411 at 458.041 kb on + strand, within Atu3411 at 458.113 kb on + strand, within Atu3411 at 458.113 kb on + strand, within Atu3411 at 458.148 kb on + strand, within Atu3411 at 458.185 kb on - strand, within Atu3411 at 458.370 kb on - strand at 458.400 kb on - strand at 458.415 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 455,508 - Atu3409 0.45 +1.4 455,513 + Atu3409 0.45 -0.5 455,523 + Atu3409 0.46 -1.3 455,531 - Atu3409 0.46 -0.3 455,616 + Atu3409 0.51 -0.4 455,616 + Atu3409 0.51 -1.4 455,624 - Atu3409 0.52 +0.2 455,965 + Atu3409 0.73 -1.1 456,048 - Atu3409 0.78 +0.4 456,056 - Atu3409 0.79 +0.3 456,073 - Atu3409 0.80 +0.3 456,121 + Atu3409 0.83 +0.6 456,155 - Atu3409 0.85 +0.6 456,273 + +0.2 456,277 - -0.3 456,312 + -0.6 456,360 - +0.2 456,366 - -1.1 456,374 + -0.2 456,649 + Atu3410 0.17 -1.1 456,693 - Atu3410 0.21 -2.5 456,717 + Atu3410 0.24 -1.2 456,725 - Atu3410 0.25 +0.4 456,725 - Atu3410 0.25 -0.8 456,729 + Atu3410 0.25 -2.5 456,827 - Atu3410 0.35 +0.1 456,888 - Atu3410 0.42 +1.0 456,955 + Atu3410 0.49 +1.0 456,955 + Atu3410 0.49 +0.1 456,961 - Atu3410 0.50 -0.7 457,068 - Atu3410 0.61 -1.9 457,188 - Atu3410 0.73 -1.7 457,204 + Atu3410 0.75 +0.2 457,205 - Atu3410 0.75 -0.8 457,226 - Atu3410 0.77 +0.4 457,344 + Atu3410 0.90 -0.1 457,353 - -2.9 457,353 - +0.4 457,407 - +2.2 457,407 - -0.3 457,524 + +0.0 457,557 + Atu3411 0.14 -0.4 457,727 - Atu3411 0.34 -0.3 457,911 - Atu3411 0.55 -0.0 457,942 + Atu3411 0.59 +2.2 458,022 - Atu3411 0.68 -0.3 458,041 + Atu3411 0.71 -0.4 458,041 + Atu3411 0.71 +0.1 458,113 + Atu3411 0.79 +0.3 458,113 + Atu3411 0.79 -0.3 458,148 + Atu3411 0.83 -0.8 458,185 - Atu3411 0.87 -0.0 458,370 - -0.9 458,400 - -0.0 458,415 + -1.1
Or see this region's nucleotide sequence