Experiment: Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0658 and Atu0659 are separated by 162 nucleotides Atu0659 and Atu0660 are separated by 257 nucleotides
Atu0658: Atu0658 - phosphate permease, at 652,090 to 653,595
Atu0658
Atu0659: Atu0659 - NTP pyrophosphohydrolase, MutT family, at 653,758 to 654,237
Atu0659
Atu0660: Atu0660 - hydrolase, at 654,495 to 655,241
Atu0660
Position (kb) 653
654
655 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 652.803 kb on - strand, within Atu0658 at 652.978 kb on + strand, within Atu0658 at 652.978 kb on + strand, within Atu0658 at 652.984 kb on - strand, within Atu0658 at 653.007 kb on - strand, within Atu0658 at 653.027 kb on - strand, within Atu0658 at 653.085 kb on + strand, within Atu0658 at 653.206 kb on - strand, within Atu0658 at 653.212 kb on - strand, within Atu0658 at 653.259 kb on - strand, within Atu0658 at 653.333 kb on - strand, within Atu0658 at 653.388 kb on + strand, within Atu0658 at 653.414 kb on - strand, within Atu0658 at 653.461 kb on - strand at 653.540 kb on - strand at 653.599 kb on - strand at 653.633 kb on - strand at 653.675 kb on + strand at 653.838 kb on + strand, within Atu0659 at 653.844 kb on + strand, within Atu0659 at 653.917 kb on + strand, within Atu0659 at 653.950 kb on - strand, within Atu0659 at 654.020 kb on + strand, within Atu0659 at 654.081 kb on - strand, within Atu0659 at 654.157 kb on + strand, within Atu0659 at 654.158 kb on - strand, within Atu0659 at 654.160 kb on - strand, within Atu0659 at 654.165 kb on - strand, within Atu0659 at 654.175 kb on - strand, within Atu0659 at 654.212 kb on + strand at 654.215 kb on - strand at 654.315 kb on - strand at 654.328 kb on - strand at 654.330 kb on - strand at 654.339 kb on - strand at 654.422 kb on - strand at 654.450 kb on - strand at 654.504 kb on + strand at 654.504 kb on + strand at 654.506 kb on + strand at 654.524 kb on - strand at 654.598 kb on + strand, within Atu0660 at 654.606 kb on - strand, within Atu0660 at 654.660 kb on + strand, within Atu0660 at 654.930 kb on + strand, within Atu0660 at 654.930 kb on + strand, within Atu0660 at 654.946 kb on + strand, within Atu0660 at 654.977 kb on + strand, within Atu0660 at 654.980 kb on + strand, within Atu0660 at 654.988 kb on - strand, within Atu0660 at 654.988 kb on - strand, within Atu0660 at 654.989 kb on - strand, within Atu0660 at 655.034 kb on - strand, within Atu0660 at 655.104 kb on - strand, within Atu0660 at 655.113 kb on + strand, within Atu0660 at 655.127 kb on - strand, within Atu0660
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 652,803 - Atu0658 0.47 -1.2 652,978 + Atu0658 0.59 -2.2 652,978 + Atu0658 0.59 -0.1 652,984 - Atu0658 0.59 -1.3 653,007 - Atu0658 0.61 -0.6 653,027 - Atu0658 0.62 -1.7 653,085 + Atu0658 0.66 -1.9 653,206 - Atu0658 0.74 -0.7 653,212 - Atu0658 0.75 +0.4 653,259 - Atu0658 0.78 -0.5 653,333 - Atu0658 0.83 -0.2 653,388 + Atu0658 0.86 -0.5 653,414 - Atu0658 0.88 -0.5 653,461 - +0.5 653,540 - -2.9 653,599 - -0.7 653,633 - +6.2 653,675 + -1.3 653,838 + Atu0659 0.17 -2.5 653,844 + Atu0659 0.18 -2.0 653,917 + Atu0659 0.33 -2.8 653,950 - Atu0659 0.40 +0.9 654,020 + Atu0659 0.55 -1.7 654,081 - Atu0659 0.67 +0.4 654,157 + Atu0659 0.83 -5.3 654,158 - Atu0659 0.83 -0.5 654,160 - Atu0659 0.84 -3.0 654,165 - Atu0659 0.85 -4.8 654,175 - Atu0659 0.87 -2.7 654,212 + -2.4 654,215 - -4.0 654,315 - -0.2 654,328 - -1.6 654,330 - -1.0 654,339 - -1.0 654,422 - -0.5 654,450 - -1.3 654,504 + +1.0 654,504 + -0.8 654,506 + -1.2 654,524 - +3.5 654,598 + Atu0660 0.14 -0.1 654,606 - Atu0660 0.15 -0.4 654,660 + Atu0660 0.22 -0.3 654,930 + Atu0660 0.58 +2.1 654,930 + Atu0660 0.58 -0.6 654,946 + Atu0660 0.60 -0.1 654,977 + Atu0660 0.65 -0.6 654,980 + Atu0660 0.65 -1.0 654,988 - Atu0660 0.66 +0.2 654,988 - Atu0660 0.66 +0.1 654,989 - Atu0660 0.66 +0.7 655,034 - Atu0660 0.72 +0.3 655,104 - Atu0660 0.82 +0.3 655,113 + Atu0660 0.83 -0.2 655,127 - Atu0660 0.85 +1.1
Or see this region's nucleotide sequence